Wall clock time and date at job start Tue Mar 31 2020 00:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.38801 * 111.00042 * 2 1 4 4 C 1.40501 * 120.18773 * 90.81154 * 3 2 1 5 5 C 1.47257 * 120.21683 * 359.97438 * 4 3 2 6 6 O 1.21528 * 120.00407 * 321.65751 * 5 4 3 7 7 N 1.34772 * 119.99926 * 141.65306 * 5 4 3 8 8 C 1.46502 * 120.00014 * 6.57036 * 7 5 4 9 9 C 1.33303 * 120.00379 * 186.57157 * 7 5 4 10 10 H 1.07994 * 119.99735 * 40.34708 * 9 7 5 11 11 C 1.46788 * 120.00132 * 220.35205 * 9 7 5 12 12 N 1.29316 * 120.00185 * 26.93195 * 11 9 7 13 13 Si 1.86796 * 120.00157 * 206.93793 * 11 9 7 14 14 H 1.48497 * 109.47603 * 89.99293 * 13 11 9 15 15 H 1.48498 * 109.47381 * 209.99999 * 13 11 9 16 16 H 1.48506 * 109.46962 * 329.99502 * 13 11 9 17 17 C 1.39806 * 119.56691 * 179.97438 * 4 3 2 18 18 C 1.37741 * 119.91457 * 0.02562 * 17 4 3 19 19 C 1.38613 * 120.36850 * 359.73987 * 18 17 4 20 20 C 1.37989 * 120.44238 * 0.52142 * 19 18 17 21 21 N 1.48020 * 119.95872 * 179.76175 * 20 19 18 22 22 O 1.31699 * 120.00322 * 354.68499 * 21 20 19 23 23 O 1.31699 * 119.99778 * 174.40845 * 21 20 19 24 24 H 1.09003 * 109.47205 * 305.11714 * 1 2 3 25 25 H 1.09000 * 109.47271 * 65.11182 * 1 2 3 26 26 H 1.08996 * 109.47038 * 185.11656 * 1 2 3 27 27 H 1.00906 * 110.99663 * 123.94470 * 2 1 3 28 28 H 1.08999 * 109.47710 * 96.22803 * 8 7 5 29 29 H 1.09007 * 109.47376 * 216.22800 * 8 7 5 30 30 H 1.09002 * 109.47115 * 336.22577 * 8 7 5 31 31 H 0.96999 * 120.00464 * 179.97438 * 12 11 9 32 32 H 1.07993 * 120.04083 * 179.97438 * 17 4 3 33 33 H 1.07998 * 119.81192 * 179.97438 * 18 17 4 34 34 H 1.07999 * 119.77523 * 180.25828 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9664 1.2958 0.0000 4 6 2.2356 1.9492 1.2143 5 6 1.9914 1.2640 2.4947 6 8 1.0185 0.5474 2.6245 7 7 2.8469 1.4314 3.5225 8 6 3.9377 2.4037 3.4167 9 6 2.7008 0.7122 4.6353 10 1 2.4341 -0.3324 4.5720 11 6 2.9022 1.3401 5.9467 12 7 2.7049 2.6098 6.0929 13 14 3.4436 0.3053 7.4046 14 1 4.9269 0.2763 7.4676 15 1 2.9063 0.8950 8.6571 16 1 2.9277 -1.0785 7.2481 17 6 2.7370 3.2542 1.1992 18 6 2.9626 3.8895 -0.0020 19 6 2.7004 3.2402 -1.1982 20 6 2.2004 1.9541 -1.2007 21 7 1.9193 1.2728 -2.4844 22 8 2.0465 1.9283 -3.6195 23 8 1.5473 0.0094 -2.4916 24 1 -0.3634 0.5912 0.8406 25 1 -0.3634 0.4325 -0.9322 26 1 -0.3633 -1.0235 0.0916 27 1 1.8305 -0.5260 0.7815 28 1 3.6344 3.3420 3.8812 29 1 4.8208 2.0158 3.9245 30 1 4.1695 2.5768 2.3658 31 1 2.8376 3.0247 6.9595 32 1 2.9462 3.7638 2.1281 33 1 3.3495 4.8977 -0.0117 34 1 2.8848 3.7459 -2.1345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170596215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:21 Heat of formation + Delta-G solvation = 36.365971 kcal Electronic energy + Delta-G solvation = -22087.998388 eV Core-core repulsion = 18605.272077 eV Total energy + Delta-G solvation = -3482.726311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.03654 -40.21978 -38.88670 -37.50040 -36.30007 -35.24121 -34.31276 -32.91127 -31.28054 -28.55636 -27.44829 -27.05286 -26.15897 -24.34282 -22.77898 -21.41128 -19.59312 -19.02027 -19.00007 -18.35429 -17.55404 -17.17882 -16.88297 -16.75217 -16.38382 -15.86494 -15.66986 -15.52550 -14.80849 -14.50580 -14.09938 -13.71080 -13.63323 -13.44991 -13.37828 -12.93953 -12.84834 -12.61492 -12.43303 -12.38069 -12.15114 -12.06251 -11.69662 -11.09861 -10.65599 -10.61534 -10.34481 -9.71098 -9.59236 -8.57004 -6.00462 -1.71865 -0.39179 0.04257 0.15336 1.32824 1.41831 1.50573 1.80790 2.22412 2.32428 2.68308 2.81811 2.89271 3.47839 3.57258 3.75459 3.81679 3.86283 4.17679 4.33567 4.40594 4.52157 4.58907 4.71429 4.78560 4.84125 4.89594 4.98633 5.03686 5.21524 5.30786 5.69273 5.72913 5.95890 6.07814 6.34229 7.05152 7.30624 8.02410 8.39927 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030398 B = 0.005122 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.898911 B = 5465.133204 C = 6093.652876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.634 5.634 3 C 0.196 3.804 4 C -0.165 4.165 5 C 0.452 3.548 6 O -0.618 6.618 7 N -0.406 5.406 8 C 0.070 3.930 9 C -0.408 4.408 10 H 0.064 0.936 11 C 0.033 3.967 12 N -0.833 5.833 13 Si 0.983 3.017 14 H -0.256 1.256 15 H -0.273 1.273 16 H -0.274 1.274 17 C -0.028 4.028 18 C -0.110 4.110 19 C -0.024 4.024 20 C -0.030 4.030 21 N -0.007 5.007 22 O -0.211 6.211 23 O -0.169 6.169 24 H 0.031 0.969 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.360 0.640 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.289 0.711 32 H 0.166 0.834 33 H 0.205 0.795 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 7.063 -6.893 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.261 5.261 3 C 0.093 3.907 4 C -0.172 4.172 5 C 0.244 3.756 6 O -0.507 6.507 7 N -0.119 5.119 8 C -0.072 4.072 9 C -0.536 4.536 10 H 0.082 0.918 11 C -0.183 4.183 12 N -0.463 5.463 13 Si 0.805 3.195 14 H -0.181 1.181 15 H -0.198 1.198 16 H -0.199 1.199 17 C -0.047 4.047 18 C -0.128 4.128 19 C -0.043 4.043 20 C -0.120 4.120 21 N 0.467 4.533 22 O -0.396 6.396 23 O -0.364 6.364 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.182 0.818 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.183 0.817 33 H 0.222 0.778 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.423 7.089 -6.818 10.784 hybrid contribution -0.311 -0.802 1.390 1.635 sum 4.111 6.286 -5.428 9.268 Atomic orbital electron populations 1.22012 0.83383 1.03543 0.99771 1.57730 1.10162 1.08777 1.49451 1.18678 0.92427 0.89766 0.89786 1.20840 1.06578 0.97288 0.92494 1.18432 0.83692 0.87563 0.85893 1.90555 1.30472 1.45281 1.84355 1.42327 1.22403 1.34496 1.12716 1.22377 0.89882 0.93609 1.01359 1.19963 1.57212 0.93044 0.83403 0.91794 1.27764 0.93557 0.96217 1.00773 1.69020 1.35931 1.13739 1.27583 0.85133 0.79502 0.78702 0.76175 1.18096 1.19758 1.19852 1.22443 0.88916 0.91589 1.01787 1.21614 1.00506 1.02567 0.88122 1.21593 0.90735 0.89087 1.02931 1.20426 1.15775 0.96463 0.79311 1.50442 0.96348 1.02638 1.03874 1.96193 1.59713 1.65958 1.17723 1.96321 1.49949 0.93921 1.96188 0.95079 0.92336 0.89439 0.81807 0.91777 0.92454 0.89426 0.89940 0.81678 0.77819 0.79792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.11 9.47 127.69 1.21 3.32 16 2 N -0.63 -23.90 4.61 -359.24 -1.66 -25.56 16 3 C 0.20 6.91 5.25 38.75 0.20 7.11 16 4 C -0.17 -5.86 5.35 -19.98 -0.11 -5.97 16 5 C 0.45 20.89 6.67 86.61 0.58 21.47 16 6 O -0.62 -32.96 13.32 -3.80 -0.05 -33.01 16 7 N -0.41 -18.99 2.84 -657.92 -1.87 -20.86 16 8 C 0.07 2.53 7.82 127.77 1.00 3.53 16 9 C -0.41 -21.43 8.92 86.71 0.77 -20.66 16 10 H 0.06 3.68 7.97 -2.91 -0.02 3.66 16 11 C 0.03 1.56 5.17 87.30 0.45 2.02 16 12 N -0.83 -39.81 12.49 23.26 0.29 -39.51 16 13 Si 0.98 37.78 29.70 68.60 2.04 39.82 16 14 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 15 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 17 C -0.03 -0.70 7.37 22.53 0.17 -0.54 16 18 C -0.11 -1.87 10.02 22.24 0.22 -1.64 16 19 C -0.02 -0.50 9.57 22.30 0.21 -0.28 16 20 C -0.03 -0.93 6.89 36.48 0.25 -0.68 16 21 N -0.01 -0.23 4.98 -46.21 -0.23 -0.46 16 22 O -0.21 -7.08 19.15 3.52 0.07 -7.02 16 23 O -0.17 -6.53 16.75 3.52 0.06 -6.47 16 24 H 0.03 1.25 6.59 -2.39 -0.02 1.23 16 25 H 0.06 2.00 7.54 -2.39 -0.02 1.98 16 26 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.36 14.68 7.03 -89.69 -0.63 14.05 16 28 H 0.06 2.34 6.92 -2.39 -0.02 2.32 16 29 H 0.06 2.08 8.08 -2.38 -0.02 2.06 16 30 H 0.09 2.49 4.74 -2.39 -0.01 2.48 16 31 H 0.29 12.53 8.26 -92.71 -0.77 11.76 16 32 H 0.17 3.96 5.44 -2.91 -0.02 3.94 16 33 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.18 2.81 7.57 -2.91 -0.02 2.79 16 Total: -1.00 -67.16 294.00 4.14 -63.02 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.54 Total: 22.39 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.96 Total: 7.67 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -3.47 Total: -86.40 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: 0.08 Total: -46.50 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.04 Total: 39.82 kcal Total: -67.16 4.14 -63.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170596215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.386 kcal (2) G-P(sol) polarization free energy of solvation -67.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds