Wall clock time and date at job start Tue Mar 31 2020 00:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47116 * 2 1 4 4 C 1.50708 * 109.47204 * 119.99860 * 2 1 3 5 5 H 1.08001 * 119.99836 * 120.00009 * 4 2 1 6 6 C 1.37874 * 119.99830 * 300.00483 * 4 2 1 7 7 N 1.31516 * 120.00248 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99774 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47121 * 59.99644 * 8 6 4 10 10 H 1.48498 * 109.46999 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46988 * 299.99730 * 8 6 4 12 12 N 1.46497 * 109.47194 * 239.99654 * 2 1 3 13 13 C 1.34781 * 119.99779 * 85.00294 * 12 2 1 14 14 O 1.21607 * 119.99802 * 0.02562 * 13 12 2 15 15 C 1.47427 * 120.00076 * 180.27249 * 13 12 2 16 16 C 1.39742 * 120.20738 * 353.79829 * 15 13 12 17 17 C 1.37748 * 119.92327 * 179.97438 * 16 15 13 18 18 N 1.48022 * 119.82201 * 180.02562 * 17 16 15 19 19 O 1.21804 * 119.99729 * 359.97438 * 18 17 16 20 20 O 1.21793 * 120.00049 * 179.97438 * 18 17 16 21 21 C 1.38611 * 120.35334 * 359.97438 * 17 16 15 22 22 C 1.37953 * 120.42506 * 359.97438 * 21 17 16 23 23 C 1.38955 * 120.06547 * 359.78444 * 22 21 17 24 24 N 1.38868 * 120.18153 * 180.23132 * 23 22 21 25 25 H 1.09006 * 109.47575 * 299.99833 * 1 2 3 26 26 H 1.08998 * 109.47227 * 60.00004 * 1 2 3 27 27 H 1.09009 * 109.47250 * 179.97438 * 1 2 3 28 28 H 0.96997 * 119.99990 * 180.02562 * 7 6 4 29 29 H 0.96994 * 120.00211 * 264.99686 * 12 2 1 30 30 H 1.07999 * 120.03471 * 359.95145 * 16 15 13 31 31 H 1.08004 * 119.78353 * 180.02562 * 21 17 16 32 32 H 1.07999 * 119.96574 * 180.02562 * 22 21 17 33 33 H 0.96997 * 120.00243 * 185.70079 * 24 23 22 34 34 H 0.97004 * 119.99462 * 5.71413 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8063 -1.1209 4.0082 10 1 1.8268 -0.4199 5.2205 11 1 1.8257 -2.5203 4.0077 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1617 -2.4116 15 6 2.6328 -0.7147 -3.5623 16 6 3.0831 -2.0349 -3.4780 17 6 3.5352 -2.6802 -4.6079 18 7 4.0112 -4.0788 -4.5161 19 8 4.0028 -4.6558 -3.4434 20 8 4.4111 -4.6526 -5.5132 21 6 3.5458 -2.0272 -5.8305 22 6 3.1036 -0.7243 -5.9305 23 6 2.6391 -0.0583 -4.8029 24 7 2.1889 1.2516 -4.9017 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7093 1.1617 3.4844 29 1 2.2490 -1.6317 -1.1525 30 1 3.0770 -2.5485 -2.5280 31 1 3.9019 -2.5421 -6.7106 32 1 3.1147 -0.2228 -6.8869 33 1 1.9432 1.7417 -4.1015 34 1 2.1199 1.6764 -5.7710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184400794.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:39 Heat of formation + Delta-G solvation = -16.750590 kcal Electronic energy + Delta-G solvation = -21271.891311 eV Core-core repulsion = 17786.861693 eV Total energy + Delta-G solvation = -3485.029618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.01017 -40.37670 -38.30391 -36.39418 -35.59089 -34.57303 -32.76209 -31.58595 -30.18980 -28.74572 -25.75138 -25.36251 -24.32294 -22.51949 -21.33932 -19.93923 -19.27091 -18.60743 -17.58401 -17.35967 -17.08117 -16.98348 -15.75840 -15.50639 -14.79670 -14.71299 -14.43812 -14.04896 -13.52665 -13.34689 -13.11073 -12.54139 -12.09443 -11.83148 -11.41252 -11.34997 -11.19289 -11.07649 -11.03393 -11.00421 -10.87185 -10.43091 -10.31455 -9.57660 -9.46845 -9.17982 -8.66504 -8.31493 -8.03256 -6.20680 -4.30630 0.04832 0.58553 1.46963 1.58024 2.83682 3.23530 3.28434 3.30251 3.51014 3.69151 3.71557 4.24104 4.29740 4.43199 4.68705 4.81025 5.12315 5.16408 5.36087 5.44699 5.63602 5.66857 5.99479 6.52536 6.68278 6.77989 6.98639 6.99542 7.18473 7.37444 7.56431 7.62230 7.76500 7.80855 8.02650 8.39796 8.61018 8.83962 9.37069 10.85225 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.004922 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.225715 B = 5686.838675 C = 7031.775707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.693 5.693 13 C 0.559 3.441 14 O -0.559 6.559 15 C -0.214 4.214 16 C 0.032 3.968 17 C -0.122 4.122 18 N 0.044 4.956 19 O -0.174 6.174 20 O -0.183 6.183 21 C 0.011 3.989 22 C -0.212 4.212 23 C 0.320 3.680 24 N -0.829 5.829 25 H 0.093 0.907 26 H 0.014 0.986 27 H 0.028 0.972 28 H 0.266 0.734 29 H 0.392 0.608 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.427 0.573 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -1.751 -16.174 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.338 5.338 13 C 0.346 3.654 14 O -0.442 6.442 15 C -0.224 4.224 16 C 0.011 3.989 17 C -0.209 4.209 18 N 0.558 4.442 19 O -0.387 6.387 20 O -0.394 6.394 21 C -0.010 4.010 22 C -0.236 4.236 23 C 0.201 3.799 24 N -0.373 5.373 25 H 0.111 0.889 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.226 0.774 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.273 0.727 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.126 -0.071 -15.940 16.081 hybrid contribution 0.434 -0.984 0.778 1.327 sum 2.560 -1.055 -15.162 15.413 Atomic orbital electron populations 1.22093 0.98091 0.99399 1.01033 1.18871 0.91243 0.94046 0.79596 0.92976 1.21161 1.32864 1.13476 0.90168 0.91888 1.24870 0.94632 0.94894 0.99112 1.69879 1.35665 1.22358 1.24178 0.86471 0.79255 0.79682 0.81539 1.20075 1.21097 1.19974 1.46520 1.63283 1.13732 1.10283 1.17726 0.78436 0.86343 0.82928 1.90347 1.54097 1.15812 1.83895 1.19604 1.13574 0.94681 0.94505 1.20983 0.87637 0.92318 0.97966 1.20555 1.18910 0.84000 0.97416 1.43468 0.97703 1.02833 1.00154 1.94555 1.59911 1.67494 1.16738 1.94484 1.49643 1.67850 1.27424 1.20769 0.91077 0.93307 0.95815 1.20579 1.09436 0.95177 0.98362 1.18080 0.84597 0.85159 0.92043 1.43826 1.67641 1.11195 1.14639 0.88870 0.96652 0.95246 0.92413 0.77420 0.82665 0.83013 0.83496 0.72749 0.77382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.15 0.34 -3.15 16 2 C 0.26 6.37 2.56 -69.08 -0.18 6.19 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.10 11.32 55.43 0.63 -23.47 16 8 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.69 -13.64 5.02 -56.01 -0.28 -13.92 16 13 C 0.56 10.24 7.71 -12.52 -0.10 10.14 16 14 O -0.56 -11.37 13.31 5.27 0.07 -11.30 16 15 C -0.21 -3.09 5.89 -104.80 -0.62 -3.71 16 16 C 0.03 0.43 9.02 -39.20 -0.35 0.08 16 17 C -0.12 -1.59 6.84 -79.99 -0.55 -2.13 16 18 N 0.04 0.66 4.45 33.94 0.15 0.81 16 19 O -0.17 -2.83 18.43 -29.46 -0.54 -3.37 16 20 O -0.18 -2.74 18.43 -29.46 -0.54 -3.28 16 21 C 0.01 0.11 9.54 -39.55 -0.38 -0.27 16 22 C -0.21 -1.91 9.88 -39.42 -0.39 -2.30 16 23 C 0.32 3.76 6.76 -83.61 -0.57 3.20 16 24 N -0.83 -8.76 8.93 32.55 0.29 -8.47 16 25 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.39 6.84 6.61 -40.82 -0.27 6.57 16 30 H 0.16 2.06 5.98 -52.49 -0.31 1.74 16 31 H 0.15 1.22 7.59 -52.48 -0.40 0.82 16 32 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.43 5.71 5.34 -40.94 -0.22 5.49 16 34 H 0.40 2.67 8.84 -40.82 -0.36 2.31 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -29.70 300.64 -6.97 -36.67 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -3.08 Total: 10.89 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -3.17 Total: -4.36 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.79 Total: -45.05 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -1.02 Total: -17.95 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.70 -6.97 -36.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184400794.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.917 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds