Wall clock time and date at job start Tue Mar 31 2020 00:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47116 * 2 1 4 4 C 1.50708 * 109.47204 * 119.99860 * 2 1 3 5 5 H 1.08001 * 119.99836 * 120.00009 * 4 2 1 6 6 C 1.37874 * 119.99830 * 300.00483 * 4 2 1 7 7 N 1.31516 * 120.00248 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99774 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47121 * 59.99644 * 8 6 4 10 10 H 1.48498 * 109.46999 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46988 * 299.99730 * 8 6 4 12 12 N 1.46497 * 109.47194 * 239.99654 * 2 1 3 13 13 C 1.34781 * 119.99779 * 85.00294 * 12 2 1 14 14 O 1.21607 * 119.99802 * 0.02562 * 13 12 2 15 15 C 1.47427 * 120.00076 * 180.27249 * 13 12 2 16 16 C 1.39742 * 120.20738 * 353.79829 * 15 13 12 17 17 C 1.37748 * 119.92327 * 179.97438 * 16 15 13 18 18 N 1.48022 * 119.82201 * 180.02562 * 17 16 15 19 19 O 1.21804 * 119.99729 * 359.97438 * 18 17 16 20 20 O 1.21793 * 120.00049 * 179.97438 * 18 17 16 21 21 C 1.38611 * 120.35334 * 359.97438 * 17 16 15 22 22 C 1.37953 * 120.42506 * 359.97438 * 21 17 16 23 23 C 1.38955 * 120.06547 * 359.78444 * 22 21 17 24 24 N 1.38868 * 120.18153 * 180.23132 * 23 22 21 25 25 H 1.09006 * 109.47575 * 299.99833 * 1 2 3 26 26 H 1.08998 * 109.47227 * 60.00004 * 1 2 3 27 27 H 1.09009 * 109.47250 * 179.97438 * 1 2 3 28 28 H 0.96997 * 119.99990 * 180.02562 * 7 6 4 29 29 H 0.96994 * 120.00211 * 264.99686 * 12 2 1 30 30 H 1.07999 * 120.03471 * 359.95145 * 16 15 13 31 31 H 1.08004 * 119.78353 * 180.02562 * 21 17 16 32 32 H 1.07999 * 119.96574 * 180.02562 * 22 21 17 33 33 H 0.96997 * 120.00243 * 185.70079 * 24 23 22 34 34 H 0.97004 * 119.99462 * 5.71413 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8063 -1.1209 4.0082 10 1 1.8268 -0.4199 5.2205 11 1 1.8257 -2.5203 4.0077 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1617 -2.4116 15 6 2.6328 -0.7147 -3.5623 16 6 3.0831 -2.0349 -3.4780 17 6 3.5352 -2.6802 -4.6079 18 7 4.0112 -4.0788 -4.5161 19 8 4.0028 -4.6558 -3.4434 20 8 4.4111 -4.6526 -5.5132 21 6 3.5458 -2.0272 -5.8305 22 6 3.1036 -0.7243 -5.9305 23 6 2.6391 -0.0583 -4.8029 24 7 2.1889 1.2516 -4.9017 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7093 1.1617 3.4844 29 1 2.2490 -1.6317 -1.1525 30 1 3.0770 -2.5485 -2.5280 31 1 3.9019 -2.5421 -6.7106 32 1 3.1147 -0.2228 -6.8869 33 1 1.9432 1.7417 -4.1015 34 1 2.1199 1.6764 -5.7710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184400794.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:39 Heat of formation + Delta-G solvation = -36.626191 kcal Electronic energy + Delta-G solvation = -21272.753182 eV Core-core repulsion = 17786.861693 eV Total energy + Delta-G solvation = -3485.891489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.11102 -41.57139 -39.58854 -37.53611 -37.04750 -35.86444 -34.44903 -32.84400 -31.22885 -30.40523 -27.37253 -26.82181 -25.46108 -23.70282 -22.70902 -21.53608 -20.52475 -19.70712 -18.79608 -18.46811 -18.39365 -17.96690 -17.34030 -17.19058 -16.28035 -16.10713 -15.48487 -15.26689 -14.70604 -14.49029 -14.40061 -14.25516 -13.71033 -13.07285 -13.03947 -12.89987 -12.76398 -12.56598 -12.30328 -12.28359 -12.20445 -12.18984 -12.16921 -11.16279 -10.95689 -10.62589 -10.53246 -9.91295 -9.07744 -8.20859 -6.37817 -1.01837 -0.39610 0.44245 0.53678 1.44886 1.45731 1.53572 1.68587 2.25221 2.46735 2.51607 2.64039 3.10156 3.35000 3.39673 3.75272 3.82562 4.13256 4.43960 4.48422 4.70189 4.75326 4.79004 4.88310 5.04165 5.12876 5.34993 5.45674 5.50159 5.62387 5.81750 6.03771 6.17404 6.62983 6.63677 6.72156 6.77397 7.24166 7.38641 8.84898 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.004922 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.225715 B = 5686.838675 C = 7031.775707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H 0.010 0.990 4 C -0.553 4.553 5 H 0.069 0.931 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.698 5.698 13 C 0.557 3.443 14 O -0.585 6.585 15 C -0.236 4.236 16 C 0.033 3.967 17 C -0.133 4.133 18 N 0.047 4.953 19 O -0.225 6.225 20 O -0.167 6.167 21 C 0.022 3.978 22 C -0.185 4.185 23 C 0.321 3.679 24 N -0.820 5.820 25 H 0.069 0.931 26 H 0.018 0.982 27 H 0.036 0.964 28 H 0.267 0.733 29 H 0.402 0.598 30 H 0.148 0.852 31 H 0.182 0.818 32 H 0.195 0.805 33 H 0.417 0.583 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -2.191 -18.625 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.028 0.972 4 C -0.591 4.591 5 H 0.087 0.913 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.345 5.345 13 C 0.346 3.654 14 O -0.468 6.468 15 C -0.245 4.245 16 C 0.012 3.988 17 C -0.220 4.220 18 N 0.556 4.444 19 O -0.427 6.427 20 O -0.385 6.385 21 C 0.001 3.999 22 C -0.208 4.208 23 C 0.200 3.800 24 N -0.363 5.363 25 H 0.088 0.912 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.237 0.763 30 H 0.166 0.834 31 H 0.200 0.800 32 H 0.212 0.788 33 H 0.259 0.741 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.816 -0.543 -18.358 18.581 hybrid contribution 0.223 -0.726 1.340 1.540 sum 3.039 -1.269 -17.018 17.334 Atomic orbital electron populations 1.21906 0.97919 0.99470 0.99986 1.18434 0.91317 0.92195 0.81207 0.97178 1.21498 1.32898 1.13694 0.90965 0.91264 1.25698 0.94760 0.95520 1.02036 1.70012 1.36694 1.23651 1.24760 0.85459 0.78653 0.78751 0.77881 1.19739 1.20908 1.19141 1.46255 1.64194 1.14171 1.09836 1.18271 0.77505 0.86158 0.83491 1.90343 1.54992 1.16952 1.84559 1.19199 1.16284 0.95141 0.93874 1.20876 0.87596 0.92052 0.98276 1.20694 1.19897 0.82982 0.98455 1.43720 0.97380 1.03513 0.99795 1.94566 1.62310 1.68513 1.17269 1.94445 1.48626 1.68266 1.27154 1.21178 0.89813 0.93509 0.95376 1.21004 1.06566 0.94300 0.98932 1.18301 0.84302 0.85491 0.91890 1.43787 1.66357 1.10756 1.15356 0.91206 0.96282 0.94449 0.92424 0.76256 0.83438 0.80046 0.78755 0.74075 0.74947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 9.26 71.98 0.67 -5.88 16 2 C 0.27 13.60 2.56 44.25 0.11 13.71 16 3 H 0.01 0.60 7.58 -2.39 -0.02 0.58 16 4 C -0.55 -28.92 8.73 25.60 0.22 -28.70 16 5 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.06 11.32 21.45 0.24 -50.82 16 8 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 N -0.70 -28.29 5.02 -449.37 -2.26 -30.54 16 13 C 0.56 20.70 7.71 86.66 0.67 21.36 16 14 O -0.58 -24.27 13.31 -4.05 -0.05 -24.32 16 15 C -0.24 -6.57 5.89 -19.98 -0.12 -6.69 16 16 C 0.03 0.87 9.02 22.52 0.20 1.08 16 17 C -0.13 -3.19 6.84 36.35 0.25 -2.95 16 18 N 0.05 1.34 4.45 -46.52 -0.21 1.13 16 19 O -0.23 -7.45 18.43 18.88 0.35 -7.10 16 20 O -0.17 -4.65 18.43 18.90 0.35 -4.30 16 21 C 0.02 0.35 9.54 22.29 0.21 0.56 16 22 C -0.19 -2.42 9.88 22.37 0.22 -2.20 16 23 C 0.32 6.62 6.76 38.71 0.26 6.88 16 24 N -0.82 -15.24 8.93 -50.94 -0.46 -15.69 16 25 H 0.07 3.74 6.07 -2.38 -0.01 3.72 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.40 14.46 6.61 -92.71 -0.61 13.85 16 30 H 0.15 4.03 5.98 -2.91 -0.02 4.01 16 31 H 0.18 1.90 7.59 -2.91 -0.02 1.87 16 32 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.42 10.68 5.34 -94.54 -0.50 10.18 16 34 H 0.42 4.09 8.84 -92.70 -0.82 3.27 16 Total: -1.00 -66.53 300.64 2.40 -64.13 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.74 Total: 24.89 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 3.15 Total: -1.27 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -2.67 Total: -95.92 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: 0.64 Total: -35.73 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -66.53 2.40 -64.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184400794.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.507 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds