Wall clock time and date at job start Tue Mar 31 2020 00:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47607 * 2 1 4 4 C 1.50702 * 109.46886 * 240.00468 * 2 1 3 5 5 H 1.08001 * 119.99656 * 275.02735 * 4 2 1 6 6 C 1.37873 * 120.00374 * 95.02134 * 4 2 1 7 7 N 1.31518 * 120.00234 * 184.60339 * 6 4 2 8 8 Si 1.86804 * 119.99860 * 4.61022 * 6 4 2 9 9 H 1.48501 * 109.47008 * 85.38685 * 8 6 4 10 10 H 1.48495 * 109.47117 * 205.39052 * 8 6 4 11 11 H 1.48508 * 109.46927 * 325.38908 * 8 6 4 12 12 N 1.46492 * 109.47290 * 120.00352 * 2 1 3 13 13 C 1.34780 * 120.00122 * 274.99590 * 12 2 1 14 14 O 1.21589 * 119.99773 * 0.02562 * 13 12 2 15 15 C 1.47517 * 120.00019 * 179.97438 * 13 12 2 16 16 C 1.39813 * 120.07212 * 0.02562 * 15 13 12 17 17 C 1.37591 * 119.93286 * 180.02562 * 16 15 13 18 18 C 1.39234 * 120.06967 * 0.27508 * 17 16 15 19 19 N 1.39046 * 119.93145 * 179.72471 * 18 17 16 20 20 C 1.39203 * 120.13756 * 359.44992 * 18 17 16 21 21 N 1.48013 * 119.96632 * 180.27854 * 20 18 17 22 22 O 1.21801 * 119.99594 * 217.80070 * 21 20 18 23 23 O 1.21797 * 120.00223 * 37.79500 * 21 20 18 24 24 C 1.37635 * 120.06637 * 0.54640 * 20 18 17 25 25 H 1.09002 * 109.47297 * 55.16748 * 1 2 3 26 26 H 1.09000 * 109.47597 * 175.17732 * 1 2 3 27 27 H 1.09007 * 109.46926 * 295.17059 * 1 2 3 28 28 H 0.96998 * 119.99783 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00169 * 94.99522 * 12 2 1 30 30 H 1.08004 * 120.03393 * 0.02562 * 16 15 13 31 31 H 1.07999 * 119.96287 * 179.97438 * 17 16 15 32 32 H 0.97003 * 119.99990 * 7.54413 * 19 18 17 33 33 H 0.97007 * 119.99752 * 187.54457 * 19 18 17 34 34 H 1.08001 * 120.03545 * 179.74325 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1349 -1.7854 -1.2293 6 6 2.3606 0.0122 -2.3580 7 7 2.7121 -0.6128 -3.4604 8 14 2.3062 1.8791 -2.3195 9 1 3.5932 2.4010 -1.7936 10 1 2.0869 2.3963 -3.6941 11 1 1.1953 2.3239 -1.4401 12 7 2.0183 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1613 2.4118 15 6 2.6384 -0.7140 3.5616 16 6 2.9713 -2.0705 3.5004 17 6 3.4287 -2.7166 4.6258 18 6 3.5547 -2.0224 5.8261 19 7 4.0118 -2.6796 6.9630 20 6 3.2296 -0.6703 5.8890 21 7 3.3709 0.0655 7.1654 22 8 2.5500 0.9103 7.4755 23 8 4.3079 -0.1738 7.9058 24 6 2.7715 -0.0184 4.7667 25 1 -0.3634 0.5870 -0.8435 26 1 -0.3634 -1.0240 -0.0864 27 1 -0.3633 0.4371 0.9302 28 1 2.9435 -0.1045 -4.2534 29 1 2.2490 -1.6318 1.1525 30 1 2.8695 -2.6107 2.5708 31 1 3.6855 -3.7646 4.5792 32 1 4.3456 -3.5880 6.8969 33 1 3.9969 -2.2296 7.8223 34 1 2.5155 1.0296 4.8170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194672568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:50 Heat of formation + Delta-G solvation = -17.183005 kcal Electronic energy + Delta-G solvation = -21084.606886 eV Core-core repulsion = 17599.558517 eV Total energy + Delta-G solvation = -3485.048369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36554 -40.18152 -38.62368 -36.74074 -35.20617 -34.92015 -32.65407 -32.04786 -30.40677 -29.10844 -26.42718 -25.39108 -23.85212 -22.95270 -21.29920 -20.01099 -19.24399 -18.83688 -18.13278 -17.67166 -17.40572 -16.81088 -16.25091 -15.58857 -14.75322 -14.54737 -14.41083 -14.27048 -13.72583 -13.40878 -13.18231 -12.58594 -12.46403 -12.08666 -11.72855 -11.63132 -11.28041 -11.26587 -11.18231 -11.08096 -10.88081 -10.64915 -9.94455 -9.87117 -9.46460 -9.28410 -8.78134 -8.43032 -8.14708 -6.30708 -4.35451 -0.07680 0.64713 1.03104 1.27741 2.74108 3.04644 3.21994 3.30551 3.37507 3.70024 3.76168 4.03709 4.26738 4.52682 4.68185 4.71283 4.88337 5.11986 5.26760 5.36762 5.72666 5.85103 5.96866 6.24497 6.27409 6.45331 6.58815 6.60322 6.85491 6.96915 7.09186 7.27160 7.43432 7.50528 8.01339 8.42635 8.67428 8.78598 9.30817 10.80707 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029620 B = 0.004034 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.067665 B = 6940.110813 C = 7406.809456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.230 3.770 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.079 0.921 6 C 0.083 3.917 7 N -0.887 5.887 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.695 5.695 13 C 0.548 3.452 14 O -0.552 6.552 15 C -0.174 4.174 16 C 0.007 3.993 17 C -0.202 4.202 18 C 0.294 3.706 19 N -0.850 5.850 20 C -0.129 4.129 21 N 0.040 4.960 22 O -0.149 6.149 23 O -0.183 6.183 24 C 0.039 3.961 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.269 0.731 29 H 0.392 0.608 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.411 0.589 33 H 0.410 0.590 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -7.046 17.457 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.070 0.930 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.523 5.523 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.343 5.343 13 C 0.334 3.666 14 O -0.432 6.432 15 C -0.180 4.180 16 C -0.013 4.013 17 C -0.225 4.225 18 C 0.181 3.819 19 N -0.389 5.389 20 C -0.218 4.218 21 N 0.557 4.443 22 O -0.369 6.369 23 O -0.391 6.391 24 C 0.019 3.981 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.226 0.774 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.241 0.759 33 H 0.243 0.757 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.771 -6.552 16.666 17.995 hybrid contribution 0.365 0.429 0.485 0.743 sum 2.135 -6.123 17.151 18.336 Atomic orbital electron populations 1.22224 0.98329 1.00686 0.99462 1.19197 0.91092 0.94448 0.82419 0.92966 1.20976 1.45595 0.95601 0.94916 0.90275 1.24932 0.93450 0.98702 0.95128 1.69874 1.44303 1.36299 1.01815 0.86903 0.79893 0.85709 0.77513 1.19795 1.21083 1.18365 1.46602 1.64371 1.13784 1.09590 1.17921 0.78839 0.86765 0.83081 1.90759 1.51865 1.15519 1.85069 1.19943 1.08940 0.94441 0.94697 1.21567 0.88330 0.92915 0.98445 1.20604 1.10205 1.01138 0.90538 1.17498 0.87616 0.87916 0.88844 1.42826 1.68869 1.18988 1.08232 1.20309 1.23555 0.91874 0.86043 1.43445 0.99019 0.99823 1.01985 1.94577 1.37079 1.26859 1.78382 1.94447 1.23942 1.70996 1.49746 1.20790 0.87437 1.01409 0.88466 0.92733 0.93336 0.95088 0.92136 0.77372 0.83280 0.83240 0.75914 0.75698 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.47 37.16 0.35 -2.77 16 2 C 0.23 5.25 2.21 -69.09 -0.15 5.10 16 3 H 0.05 1.31 4.73 -51.93 -0.25 1.06 16 4 C -0.53 -13.69 9.05 -34.44 -0.31 -14.00 16 5 H 0.08 2.12 8.06 -52.49 -0.42 1.69 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 8 Si 0.87 21.02 27.00 -169.99 -4.59 16.43 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.26 -6.15 6.81 56.52 0.38 -5.77 16 12 N -0.70 -13.06 5.02 -55.99 -0.28 -13.34 16 13 C 0.55 10.12 7.73 -12.48 -0.10 10.02 16 14 O -0.55 -12.26 16.00 5.29 0.08 -12.18 16 15 C -0.17 -2.45 5.88 -104.95 -0.62 -3.06 16 16 C 0.01 0.08 9.53 -39.23 -0.37 -0.30 16 17 C -0.20 -1.68 9.87 -39.45 -0.39 -2.07 16 18 C 0.29 2.88 6.71 -83.86 -0.56 2.32 16 19 N -0.85 -5.97 8.80 32.41 0.29 -5.69 16 20 C -0.13 -1.63 6.50 -79.81 -0.52 -2.15 16 21 N 0.04 0.55 4.27 34.03 0.15 0.69 16 22 O -0.15 -2.24 18.94 -29.46 -0.56 -2.80 16 23 O -0.18 -2.44 16.78 -29.46 -0.49 -2.94 16 24 C 0.04 0.55 9.20 -39.23 -0.36 0.19 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.39 6.14 6.61 -40.82 -0.27 5.87 16 30 H 0.15 1.25 6.39 -52.48 -0.34 0.92 16 31 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.41 1.57 8.84 -40.82 -0.36 1.21 16 33 H 0.41 3.14 6.48 -40.82 -0.26 2.88 16 34 H 0.16 2.36 7.59 -52.49 -0.40 1.96 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -32.08 302.88 -6.34 -38.42 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -3.14 Total: 5.97 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -3.13 Total: -4.58 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.92 Total: -42.89 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.97 Total: -17.91 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.59 Total: 16.43 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.08 -6.34 -38.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194672568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.236 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds