Wall clock time and date at job start Tue Mar 31 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47607 * 2 1 4 4 C 1.50702 * 109.46886 * 240.00468 * 2 1 3 5 5 H 1.08001 * 119.99656 * 275.02735 * 4 2 1 6 6 C 1.37873 * 120.00374 * 95.02134 * 4 2 1 7 7 N 1.31518 * 120.00234 * 184.60339 * 6 4 2 8 8 Si 1.86804 * 119.99860 * 4.61022 * 6 4 2 9 9 H 1.48501 * 109.47008 * 85.38685 * 8 6 4 10 10 H 1.48495 * 109.47117 * 205.39052 * 8 6 4 11 11 H 1.48508 * 109.46927 * 325.38908 * 8 6 4 12 12 N 1.46492 * 109.47290 * 120.00352 * 2 1 3 13 13 C 1.34780 * 120.00122 * 274.99590 * 12 2 1 14 14 O 1.21589 * 119.99773 * 0.02562 * 13 12 2 15 15 C 1.47517 * 120.00019 * 179.97438 * 13 12 2 16 16 C 1.39813 * 120.07212 * 0.02562 * 15 13 12 17 17 C 1.37591 * 119.93286 * 180.02562 * 16 15 13 18 18 C 1.39234 * 120.06967 * 0.27508 * 17 16 15 19 19 N 1.39046 * 119.93145 * 179.72471 * 18 17 16 20 20 C 1.39203 * 120.13756 * 359.44992 * 18 17 16 21 21 N 1.48013 * 119.96632 * 180.27854 * 20 18 17 22 22 O 1.21801 * 119.99594 * 217.80070 * 21 20 18 23 23 O 1.21797 * 120.00223 * 37.79500 * 21 20 18 24 24 C 1.37635 * 120.06637 * 0.54640 * 20 18 17 25 25 H 1.09002 * 109.47297 * 55.16748 * 1 2 3 26 26 H 1.09000 * 109.47597 * 175.17732 * 1 2 3 27 27 H 1.09007 * 109.46926 * 295.17059 * 1 2 3 28 28 H 0.96998 * 119.99783 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00169 * 94.99522 * 12 2 1 30 30 H 1.08004 * 120.03393 * 0.02562 * 16 15 13 31 31 H 1.07999 * 119.96287 * 179.97438 * 17 16 15 32 32 H 0.97003 * 119.99990 * 7.54413 * 19 18 17 33 33 H 0.97007 * 119.99752 * 187.54457 * 19 18 17 34 34 H 1.08001 * 120.03545 * 179.74325 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1349 -1.7854 -1.2293 6 6 2.3606 0.0122 -2.3580 7 7 2.7121 -0.6128 -3.4604 8 14 2.3062 1.8791 -2.3195 9 1 3.5932 2.4010 -1.7936 10 1 2.0869 2.3963 -3.6941 11 1 1.1953 2.3239 -1.4401 12 7 2.0183 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1613 2.4118 15 6 2.6384 -0.7140 3.5616 16 6 2.9713 -2.0705 3.5004 17 6 3.4287 -2.7166 4.6258 18 6 3.5547 -2.0224 5.8261 19 7 4.0118 -2.6796 6.9630 20 6 3.2296 -0.6703 5.8890 21 7 3.3709 0.0655 7.1654 22 8 2.5500 0.9103 7.4755 23 8 4.3079 -0.1738 7.9058 24 6 2.7715 -0.0184 4.7667 25 1 -0.3634 0.5870 -0.8435 26 1 -0.3634 -1.0240 -0.0864 27 1 -0.3633 0.4371 0.9302 28 1 2.9435 -0.1045 -4.2534 29 1 2.2490 -1.6318 1.1525 30 1 2.8695 -2.6107 2.5708 31 1 3.6855 -3.7646 4.5792 32 1 4.3456 -3.5880 6.8969 33 1 3.9969 -2.2296 7.8223 34 1 2.5155 1.0296 4.8170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194672568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:49 Heat of formation + Delta-G solvation = -40.360296 kcal Electronic energy + Delta-G solvation = -21085.611929 eV Core-core repulsion = 17599.558517 eV Total energy + Delta-G solvation = -3486.053412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.39585 -41.32745 -39.86865 -37.80107 -36.80495 -35.93763 -34.44570 -33.16046 -31.82123 -30.27338 -27.45990 -27.30883 -24.98703 -23.87702 -22.71412 -21.55216 -20.54682 -19.87842 -19.13499 -18.96281 -18.48970 -17.82262 -17.74275 -17.05705 -16.17308 -15.98696 -15.46007 -15.29042 -15.06134 -14.69378 -14.53252 -14.31424 -14.02965 -13.34666 -13.10108 -13.01546 -12.80429 -12.79637 -12.45811 -12.36822 -12.27475 -12.03451 -11.88070 -11.22825 -11.02030 -10.82670 -10.74216 -9.92219 -9.11280 -8.38938 -6.44678 -1.07140 -0.33422 0.08656 0.29522 1.29178 1.35139 1.44772 1.67054 2.26510 2.28177 2.36892 2.54478 3.02716 3.19011 3.63104 3.77998 3.80084 3.87562 4.36051 4.44495 4.55678 4.71455 4.80100 4.84573 4.97586 5.06760 5.11919 5.29719 5.37475 5.45655 5.68737 5.86461 6.11598 6.41867 6.46213 6.60345 6.82318 7.20633 7.36977 8.75490 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029620 B = 0.004034 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.067665 B = 6940.110813 C = 7406.809456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.232 3.768 3 H 0.029 0.971 4 C -0.524 4.524 5 H 0.065 0.935 6 C 0.038 3.962 7 N -0.926 5.926 8 Si 0.919 3.081 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.258 1.258 12 N -0.692 5.692 13 C 0.549 3.451 14 O -0.598 6.598 15 C -0.192 4.192 16 C 0.017 3.983 17 C -0.178 4.178 18 C 0.308 3.692 19 N -0.827 5.827 20 C -0.146 4.146 21 N 0.043 4.957 22 O -0.203 6.203 23 O -0.159 6.159 24 C 0.030 3.970 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.270 0.730 29 H 0.408 0.592 30 H 0.173 0.827 31 H 0.199 0.801 32 H 0.431 0.569 33 H 0.410 0.590 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 -9.578 18.931 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.129 3.871 3 H 0.047 0.953 4 C -0.562 4.562 5 H 0.083 0.917 6 C -0.163 4.163 7 N -0.565 5.565 8 Si 0.745 3.255 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.182 1.182 12 N -0.341 5.341 13 C 0.337 3.663 14 O -0.482 6.482 15 C -0.199 4.199 16 C -0.003 4.003 17 C -0.200 4.200 18 C 0.191 3.809 19 N -0.367 5.367 20 C -0.236 4.236 21 N 0.556 4.444 22 O -0.410 6.410 23 O -0.376 6.376 24 C 0.009 3.991 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.246 0.754 30 H 0.190 0.810 31 H 0.216 0.784 32 H 0.265 0.735 33 H 0.243 0.757 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.502 -9.076 18.180 20.473 hybrid contribution 0.239 1.017 0.188 1.062 sum 2.741 -8.059 18.368 20.245 Atomic orbital electron populations 1.22123 0.96931 1.01582 0.99463 1.18945 0.92123 0.93188 0.82875 0.95307 1.21160 1.44222 0.95079 0.95726 0.91659 1.25514 0.93813 1.01838 0.95125 1.69955 1.46429 1.37575 1.02526 0.86166 0.79587 0.82104 0.77651 1.20217 1.20325 1.18192 1.46226 1.64644 1.14494 1.08748 1.18457 0.77668 0.86251 0.83915 1.90729 1.53803 1.17731 1.85896 1.19488 1.11786 0.96045 0.92540 1.21788 0.87244 0.91035 1.00255 1.21066 1.07593 1.02820 0.88553 1.17705 0.86224 0.86712 0.90215 1.42895 1.66722 1.19743 1.07308 1.20339 1.25375 0.92996 0.84874 1.43625 0.98698 0.99684 1.02362 1.94594 1.38202 1.28820 1.79395 1.94402 1.23193 1.70068 1.49900 1.20567 0.88491 1.00654 0.89403 0.93370 0.91841 0.94578 0.92013 0.75440 0.81012 0.78382 0.73506 0.75738 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 9.47 71.98 0.68 -5.20 16 2 C 0.23 10.52 2.21 44.25 0.10 10.62 16 3 H 0.03 1.46 4.73 -2.39 -0.01 1.45 16 4 C -0.52 -26.80 9.05 25.60 0.23 -26.57 16 5 H 0.07 3.47 8.06 -2.91 -0.02 3.45 16 6 C 0.04 2.07 5.47 84.65 0.46 2.53 16 7 N -0.93 -53.29 13.96 21.45 0.30 -52.99 16 8 Si 0.92 43.66 27.00 68.60 1.85 45.51 16 9 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.26 -12.05 6.81 99.48 0.68 -11.37 16 12 N -0.69 -25.39 5.02 -449.31 -2.25 -27.65 16 13 C 0.55 20.23 7.73 86.69 0.67 20.90 16 14 O -0.60 -27.40 16.00 -3.99 -0.06 -27.47 16 15 C -0.19 -5.21 5.88 -20.08 -0.12 -5.33 16 16 C 0.02 0.28 9.53 22.50 0.21 0.50 16 17 C -0.18 -2.02 9.87 22.36 0.22 -1.80 16 18 C 0.31 4.81 6.71 38.47 0.26 5.07 16 19 N -0.83 -7.78 8.80 -51.38 -0.45 -8.23 16 20 C -0.15 -3.51 6.50 36.47 0.24 -3.27 16 21 N 0.04 1.16 4.27 -46.25 -0.20 0.96 16 22 O -0.20 -6.37 18.94 18.88 0.36 -6.01 16 23 O -0.16 -3.97 16.78 18.89 0.32 -3.65 16 24 C 0.03 0.83 9.20 22.50 0.21 1.04 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.41 12.03 6.61 -92.71 -0.61 11.42 16 30 H 0.17 2.12 6.39 -2.91 -0.02 2.10 16 31 H 0.20 0.43 8.06 -2.91 -0.02 0.40 16 32 H 0.43 0.81 8.84 -92.71 -0.82 -0.01 16 33 H 0.41 4.69 6.48 -92.70 -0.60 4.08 16 34 H 0.13 4.34 7.59 -2.91 -0.02 4.32 16 Total: -1.00 -72.15 302.88 2.15 -70.00 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -0.87 Total: 11.03 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 3.16 Total: -1.51 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -2.60 Total: -87.90 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: 0.61 Total: -37.13 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.85 Total: 45.51 kcal Total: -72.15 2.15 -70.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194672568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.638 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds