Wall clock time and date at job start Tue Mar 31 2020 00:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 120.00115 * 2 1 4 4 C 1.50700 * 109.47511 * 269.99928 * 3 2 1 5 5 H 1.08000 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00225 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99965 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00232 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47025 * 89.99812 * 8 6 4 10 10 H 1.48496 * 109.47643 * 209.99936 * 8 6 4 11 11 H 1.48506 * 109.46972 * 330.00271 * 8 6 4 12 12 C 1.34780 * 119.99731 * 180.02562 * 2 1 3 13 13 O 1.21597 * 119.99578 * 180.02562 * 12 2 1 14 14 C 1.47428 * 120.00061 * 359.97438 * 12 2 1 15 15 C 1.40386 * 120.20732 * 270.00175 * 14 12 2 16 16 N 1.38878 * 120.17596 * 0.02640 * 15 14 12 17 17 C 1.38918 * 119.64889 * 179.75088 * 15 14 12 18 18 C 1.37996 * 120.06455 * 0.24897 * 17 15 14 19 19 C 1.38567 * 120.42177 * 0.02562 * 18 17 15 20 20 C 1.37794 * 120.35449 * 359.97396 * 19 18 17 21 21 N 1.48017 * 120.03673 * 180.02562 * 20 19 18 22 22 O 1.21797 * 120.00018 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99477 * 180.02562 * 21 20 19 24 24 H 1.08991 * 109.47423 * 270.00059 * 1 2 3 25 25 H 1.09003 * 109.46620 * 30.00026 * 1 2 3 26 26 H 1.08996 * 109.47120 * 149.99629 * 1 2 3 27 27 H 1.09003 * 109.47078 * 30.00094 * 3 2 1 28 28 H 1.08994 * 109.47263 * 149.99602 * 3 2 1 29 29 H 0.97001 * 119.99932 * 180.02562 * 7 6 4 30 30 H 0.97001 * 120.00386 * 179.72780 * 16 15 14 31 31 H 0.97005 * 119.99889 * 359.44583 * 16 15 14 32 32 H 1.07998 * 119.96467 * 180.27684 * 17 15 14 33 33 H 1.07994 * 119.79121 * 179.97438 * 18 17 15 34 34 H 1.08002 * 119.82300 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.3449 3.2578 -2.9126 8 14 3.7331 3.9292 -0.2529 9 1 5.1066 3.5081 0.1230 10 1 3.7480 5.3559 -0.6642 11 1 2.8272 3.7591 0.9115 12 6 2.1389 -1.1673 -0.0005 13 8 3.3549 -1.1672 -0.0001 14 6 1.4017 -2.4440 -0.0005 15 6 1.0490 -3.0559 1.2127 16 7 1.3921 -2.4615 2.4200 17 6 0.3498 -4.2563 1.1992 18 6 0.0095 -4.8446 -0.0018 19 6 0.3613 -4.2460 -1.2010 20 6 1.0548 -3.0553 -1.2078 21 7 1.4265 -2.4217 -2.4928 22 8 1.1197 -2.9530 -3.5450 23 8 2.0399 -1.3695 -2.4979 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.8218 4.0837 -3.0898 30 1 1.1437 -2.8845 3.2569 31 1 1.8838 -1.6254 2.4265 32 1 0.0720 -4.7292 2.1295 33 1 -0.5336 -5.7780 -0.0072 34 1 0.0904 -4.7151 -2.1353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272345097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:05 Heat of formation + Delta-G solvation = 6.724684 kcal Electronic energy + Delta-G solvation = -22467.567836 eV Core-core repulsion = 18983.556182 eV Total energy + Delta-G solvation = -3484.011654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.83287 -40.12257 -38.32852 -36.01815 -35.09505 -34.96736 -32.53750 -31.83912 -29.54170 -28.32686 -26.55619 -25.93711 -23.86707 -22.22668 -21.99736 -19.52048 -18.74406 -18.25150 -17.29301 -17.13008 -16.84772 -16.68061 -16.15433 -15.72674 -15.10330 -14.80135 -14.26833 -13.84469 -13.54753 -13.23745 -12.61079 -12.47274 -12.26529 -12.17208 -12.07056 -11.50376 -11.31226 -11.05850 -10.88996 -10.64076 -10.55922 -10.50706 -10.12082 -9.66286 -9.40563 -9.21057 -8.46695 -8.05206 -7.76116 -5.93371 -3.91318 -0.02316 0.91349 1.61602 1.69710 3.00228 3.18980 3.34179 3.39165 3.41430 3.42716 3.67042 4.34886 4.48893 4.57172 4.71599 4.82135 4.95572 5.12302 5.37150 5.48621 5.54893 5.66986 5.73969 5.86445 6.06465 6.09159 6.65129 6.74354 6.90666 6.94534 7.26062 7.30994 7.70180 8.05655 8.09850 8.58762 8.79716 9.24116 9.65274 11.20033 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.006556 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.443664 B = 4269.767027 C = 5096.608226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.579 5.579 3 C 0.217 3.783 4 C -0.523 4.523 5 H 0.091 0.909 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.870 3.130 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.558 3.442 13 O -0.517 6.517 14 C -0.137 4.137 15 C 0.250 3.750 16 N -0.857 5.857 17 C -0.158 4.158 18 C -0.062 4.062 19 C -0.121 4.121 20 C 0.032 3.968 21 N 0.009 4.991 22 O -0.177 6.177 23 O -0.089 6.089 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.406 0.594 31 H 0.408 0.592 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 -15.657 12.171 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.310 5.310 3 C 0.097 3.903 4 C -0.562 4.562 5 H 0.109 0.891 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.697 3.303 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.194 1.194 12 C 0.343 3.657 13 O -0.394 6.394 14 C -0.147 4.147 15 C 0.140 3.860 16 N -0.394 5.394 17 C -0.181 4.181 18 C -0.081 4.081 19 C -0.143 4.143 20 C -0.052 4.052 21 N 0.532 4.468 22 O -0.385 6.385 23 O -0.316 6.316 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.236 0.764 31 H 0.238 0.762 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.078 -15.828 12.640 22.625 hybrid contribution 0.480 0.916 0.536 1.165 sum -9.598 -14.912 13.176 22.093 Atomic orbital electron populations 1.21620 0.81095 1.02834 1.00315 1.47744 1.06053 1.06671 1.70522 1.19748 0.92139 0.79247 0.99151 1.21451 1.36484 1.06884 0.91349 0.89090 1.24840 0.95531 0.97344 0.95235 1.69907 1.41587 1.23375 1.18429 0.86966 0.80036 0.80043 0.83217 1.20075 1.21197 1.19361 1.17508 0.87191 0.82668 0.78380 1.90818 1.12617 1.86401 1.49536 1.19433 1.04811 0.99594 0.90820 1.17354 0.91951 0.91421 0.85236 1.42358 1.63905 1.28679 1.04485 1.20914 1.02544 0.95019 0.99671 1.20926 0.97512 0.99429 0.90258 1.20740 0.99121 0.93583 1.00816 1.20901 1.04631 0.96596 0.83048 1.43710 0.99737 1.01145 1.02245 1.94468 1.58550 1.65860 1.19664 1.94867 1.35528 1.07712 1.93509 0.93509 0.89935 0.93326 0.95140 0.94582 0.92753 0.76431 0.76170 0.84086 0.83607 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.26 59.85 0.61 2.02 16 2 N -0.58 -12.07 2.76 -184.24 -0.51 -12.58 16 3 C 0.22 5.30 4.23 -5.20 -0.02 5.28 16 4 C -0.52 -15.32 9.94 -34.44 -0.34 -15.66 16 5 H 0.09 2.96 7.03 -52.49 -0.37 2.59 16 6 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.89 -28.29 13.96 55.43 0.77 -27.52 16 8 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 C 0.56 11.73 3.26 -12.52 -0.04 11.69 16 13 O -0.52 -13.11 16.55 -3.87 -0.06 -13.17 16 14 C -0.14 -2.27 3.92 -104.80 -0.41 -2.68 16 15 C 0.25 2.96 6.76 -83.61 -0.57 2.40 16 16 N -0.86 -8.24 8.99 32.55 0.29 -7.95 16 17 C -0.16 -1.33 9.88 -39.42 -0.39 -1.71 16 18 C -0.06 -0.51 10.03 -39.55 -0.40 -0.91 16 19 C -0.12 -1.44 9.54 -39.62 -0.38 -1.82 16 20 C 0.03 0.53 6.46 -79.57 -0.51 0.02 16 21 N 0.01 0.20 4.45 34.15 0.15 0.35 16 22 O -0.18 -3.53 18.44 -29.46 -0.54 -4.07 16 23 O -0.09 -2.24 15.27 -33.34 -0.51 -2.75 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 26 H 0.05 0.76 6.55 -51.93 -0.34 0.42 16 27 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 28 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 29 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.41 2.32 8.84 -40.82 -0.36 1.96 16 31 H 0.41 4.72 7.68 -40.82 -0.31 4.40 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.15 1.57 7.59 -52.49 -0.40 1.17 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -37.48 300.69 -6.45 -43.93 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -3.36 Total: 1.53 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.54 Total: 0.68 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.71 Total: -47.69 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.12 Total: -19.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -37.48 -6.45 -43.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272345097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.658 kcal (2) G-P(sol) polarization free energy of solvation -37.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds