Wall clock time and date at job start Tue Mar 31 2020 00:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 120.00115 * 2 1 4 4 C 1.50700 * 109.47511 * 269.99928 * 3 2 1 5 5 H 1.08000 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00225 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99965 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00232 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47025 * 89.99812 * 8 6 4 10 10 H 1.48496 * 109.47643 * 209.99936 * 8 6 4 11 11 H 1.48506 * 109.46972 * 330.00271 * 8 6 4 12 12 C 1.34780 * 119.99731 * 180.02562 * 2 1 3 13 13 O 1.21597 * 119.99578 * 180.02562 * 12 2 1 14 14 C 1.47428 * 120.00061 * 359.97438 * 12 2 1 15 15 C 1.40386 * 120.20732 * 270.00175 * 14 12 2 16 16 N 1.38878 * 120.17596 * 0.02640 * 15 14 12 17 17 C 1.38918 * 119.64889 * 179.75088 * 15 14 12 18 18 C 1.37996 * 120.06455 * 0.24897 * 17 15 14 19 19 C 1.38567 * 120.42177 * 0.02562 * 18 17 15 20 20 C 1.37794 * 120.35449 * 359.97396 * 19 18 17 21 21 N 1.48017 * 120.03673 * 180.02562 * 20 19 18 22 22 O 1.21797 * 120.00018 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99477 * 180.02562 * 21 20 19 24 24 H 1.08991 * 109.47423 * 270.00059 * 1 2 3 25 25 H 1.09003 * 109.46620 * 30.00026 * 1 2 3 26 26 H 1.08996 * 109.47120 * 149.99629 * 1 2 3 27 27 H 1.09003 * 109.47078 * 30.00094 * 3 2 1 28 28 H 1.08994 * 109.47263 * 149.99602 * 3 2 1 29 29 H 0.97001 * 119.99932 * 180.02562 * 7 6 4 30 30 H 0.97001 * 120.00386 * 179.72780 * 16 15 14 31 31 H 0.97005 * 119.99889 * 359.44583 * 16 15 14 32 32 H 1.07998 * 119.96467 * 180.27684 * 17 15 14 33 33 H 1.07994 * 119.79121 * 179.97438 * 18 17 15 34 34 H 1.08002 * 119.82300 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.3449 3.2578 -2.9126 8 14 3.7331 3.9292 -0.2529 9 1 5.1066 3.5081 0.1230 10 1 3.7480 5.3559 -0.6642 11 1 2.8272 3.7591 0.9115 12 6 2.1389 -1.1673 -0.0005 13 8 3.3549 -1.1672 -0.0001 14 6 1.4017 -2.4440 -0.0005 15 6 1.0490 -3.0559 1.2127 16 7 1.3921 -2.4615 2.4200 17 6 0.3498 -4.2563 1.1992 18 6 0.0095 -4.8446 -0.0018 19 6 0.3613 -4.2460 -1.2010 20 6 1.0548 -3.0553 -1.2078 21 7 1.4265 -2.4217 -2.4928 22 8 1.1197 -2.9530 -3.5450 23 8 2.0399 -1.3695 -2.4979 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1384 0.5139 29 1 3.8218 4.0837 -3.0898 30 1 1.1437 -2.8845 3.2569 31 1 1.8838 -1.6254 2.4265 32 1 0.0720 -4.7292 2.1295 33 1 -0.5336 -5.7780 -0.0072 34 1 0.0904 -4.7151 -2.1353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272345097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:05 Heat of formation + Delta-G solvation = -23.123619 kcal Electronic energy + Delta-G solvation = -22468.862156 eV Core-core repulsion = 18983.556182 eV Total energy + Delta-G solvation = -3485.305973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.26250 -41.39166 -39.65350 -37.57304 -36.70005 -35.97303 -34.64952 -33.00604 -30.84778 -29.93967 -27.85588 -27.43163 -25.35953 -23.62588 -23.32317 -20.92577 -20.07777 -19.58280 -19.06635 -18.61861 -18.37046 -17.91825 -17.40919 -17.05746 -16.43455 -16.07769 -15.72817 -15.20313 -14.83647 -14.54976 -14.33941 -13.95643 -13.72609 -13.39928 -13.29938 -13.10603 -12.85836 -12.68414 -12.45894 -12.25037 -12.18629 -12.17168 -12.01525 -11.62031 -11.01373 -10.77106 -10.45825 -9.48813 -8.91792 -8.23995 -6.28595 -1.31759 0.01285 0.36078 0.43310 1.31760 1.38048 1.45294 1.50196 2.17369 2.35348 2.37974 2.60487 3.07343 3.33083 3.53026 3.78180 4.04046 4.04429 4.13580 4.26921 4.47601 4.69449 4.72445 4.78465 4.85079 4.93046 5.07245 5.16778 5.46068 5.49697 5.55647 6.06659 6.33393 6.43566 6.52082 6.68894 6.83681 7.17769 7.35090 8.93881 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.006556 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.443664 B = 4269.767027 C = 5096.608226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.586 5.586 3 C 0.226 3.774 4 C -0.531 4.531 5 H 0.038 0.962 6 C 0.004 3.996 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.232 1.232 12 C 0.563 3.437 13 O -0.582 6.582 14 C -0.180 4.180 15 C 0.253 3.747 16 N -0.846 5.846 17 C -0.122 4.122 18 C -0.038 4.038 19 C -0.109 4.109 20 C 0.000 4.000 21 N 0.017 4.983 22 O -0.136 6.136 23 O -0.222 6.222 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.023 0.977 29 H 0.265 0.735 30 H 0.427 0.573 31 H 0.398 0.602 32 H 0.197 0.803 33 H 0.205 0.795 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 -18.984 16.248 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.316 5.316 3 C 0.104 3.896 4 C -0.570 4.570 5 H 0.056 0.944 6 C -0.193 4.193 7 N -0.591 5.591 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.155 1.155 12 C 0.351 3.649 13 O -0.463 6.463 14 C -0.191 4.191 15 C 0.142 3.858 16 N -0.384 5.384 17 C -0.144 4.144 18 C -0.057 4.057 19 C -0.130 4.130 20 C -0.084 4.084 21 N 0.529 4.471 22 O -0.363 6.363 23 O -0.419 6.419 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.261 0.739 31 H 0.226 0.774 32 H 0.214 0.786 33 H 0.222 0.778 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.949 -18.989 16.847 28.497 hybrid contribution 1.162 1.517 -0.782 2.064 sum -11.787 -17.473 16.065 26.501 Atomic orbital electron populations 1.21792 0.78502 1.02519 1.02845 1.47749 1.07712 1.05758 1.70374 1.19411 0.92650 0.81768 0.95763 1.21699 1.36129 1.06336 0.92808 0.94403 1.25926 0.95619 0.99100 0.98659 1.70104 1.43130 1.24347 1.21505 0.85701 0.79499 0.77605 0.79951 1.20386 1.20219 1.15531 1.18125 0.86642 0.84126 0.76016 1.90742 1.15631 1.87645 1.52244 1.19108 1.08509 0.98473 0.92966 1.17630 0.91830 0.92332 0.84012 1.42391 1.62957 1.28183 1.04863 1.21625 0.98379 0.92282 1.02163 1.21632 0.95497 1.00344 0.88180 1.21261 0.96954 0.91233 1.03547 1.21160 1.08249 0.98659 0.80317 1.44376 0.98373 1.00474 1.03834 1.94357 1.55656 1.64417 1.21841 1.94914 1.41507 1.11156 1.94339 0.89152 0.91319 0.92682 0.92551 0.95934 0.92593 0.73915 0.77375 0.78582 0.77847 0.81404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.85 10.26 127.77 1.31 4.16 16 2 N -0.59 -25.64 2.76 -855.06 -2.36 -28.00 16 3 C 0.23 11.52 4.23 85.63 0.36 11.89 16 4 C -0.53 -33.56 9.94 25.60 0.25 -33.31 16 5 H 0.04 2.74 7.03 -2.91 -0.02 2.72 16 6 C 0.00 0.23 5.47 84.65 0.46 0.69 16 7 N -0.95 -64.22 13.96 21.44 0.30 -63.92 16 8 Si 0.95 46.30 27.47 68.60 1.88 48.19 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.23 -9.88 6.54 99.48 0.65 -9.23 16 12 C 0.56 25.05 3.26 86.66 0.28 25.33 16 13 O -0.58 -32.00 16.55 4.73 0.08 -31.92 16 14 C -0.18 -5.93 3.92 -19.98 -0.08 -6.01 16 15 C 0.25 5.07 6.76 38.71 0.26 5.33 16 16 N -0.85 -13.40 8.99 -50.94 -0.46 -13.85 16 17 C -0.12 -1.16 9.88 22.38 0.22 -0.93 16 18 C -0.04 -0.34 10.03 22.29 0.22 -0.12 16 19 C -0.11 -2.14 9.54 22.24 0.21 -1.92 16 20 C 0.00 0.01 6.46 36.62 0.24 0.24 16 21 N 0.02 0.74 4.45 -45.88 -0.20 0.53 16 22 O -0.14 -5.56 18.44 18.89 0.35 -5.21 16 23 O -0.22 -12.45 15.27 22.60 0.35 -12.11 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 26 H 0.05 1.74 6.55 -2.39 -0.02 1.73 16 27 H 0.06 2.56 7.13 -2.39 -0.02 2.55 16 28 H 0.02 1.21 6.85 -2.39 -0.02 1.19 16 29 H 0.27 16.60 8.31 -92.71 -0.77 15.83 16 30 H 0.43 2.77 8.84 -92.71 -0.82 1.95 16 31 H 0.40 8.58 7.68 -92.70 -0.71 7.87 16 32 H 0.20 -0.11 8.06 -2.91 -0.02 -0.14 16 33 H 0.20 -0.25 8.06 -2.91 -0.02 -0.27 16 34 H 0.17 2.74 7.59 -2.91 -0.02 2.72 16 Total: -1.00 -97.92 300.69 3.27 -94.65 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -0.41 Total: 6.29 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 3.75 Total: 5.34 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -2.72 Total: -105.24 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: 0.77 Total: -49.23 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.88 Total: 48.19 kcal Total: -97.92 3.27 -94.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272345097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.523 kcal (2) G-P(sol) polarization free energy of solvation -97.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds