Wall clock time and date at job start Tue Mar 31 2020 00:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46755 * 2 1 4 4 C 1.33295 * 120.00436 * 274.87540 * 3 2 1 5 5 H 1.08001 * 120.00075 * 145.17283 * 4 3 2 6 6 C 1.46795 * 120.00123 * 325.18247 * 4 3 2 7 7 N 1.29316 * 119.99712 * 338.34637 * 6 4 3 8 8 Si 1.86796 * 120.00172 * 158.35329 * 6 4 3 9 9 H 1.48506 * 109.47041 * 59.99705 * 8 6 4 10 10 H 1.48493 * 109.47336 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47303 * 299.99736 * 8 6 4 12 12 C 1.34780 * 119.99629 * 94.88590 * 3 2 1 13 13 O 1.21531 * 119.99700 * 179.97438 * 12 3 2 14 14 C 1.47252 * 120.00026 * 359.97438 * 12 3 2 15 15 C 1.40500 * 120.21486 * 270.00097 * 14 12 3 16 16 N 1.38805 * 120.18544 * 359.97438 * 15 14 12 17 17 C 1.38924 * 119.63493 * 179.70061 * 15 14 12 18 18 C 1.37994 * 120.06906 * 0.27807 * 17 15 14 19 19 C 1.38617 * 120.44042 * 359.97438 * 18 17 15 20 20 C 1.37739 * 120.37287 * 359.97438 * 19 18 17 21 21 N 1.48021 * 120.04074 * 180.02562 * 20 19 18 22 22 O 1.31700 * 119.99881 * 0.02562 * 21 20 19 23 23 O 1.31702 * 119.99688 * 180.02562 * 21 20 19 24 24 H 1.08996 * 109.46798 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47269 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47130 * 60.00005 * 1 2 3 27 27 H 1.09002 * 109.47054 * 240.00578 * 2 1 3 28 28 H 1.08991 * 109.47332 * 120.00218 * 2 1 3 29 29 H 0.97001 * 119.99652 * 179.97438 * 7 6 4 30 30 H 0.96998 * 120.00237 * 179.72480 * 16 15 14 31 31 H 0.97003 * 120.00027 * 359.44205 * 16 15 14 32 32 H 1.07994 * 119.96479 * 180.29459 * 17 15 14 33 33 H 1.07994 * 119.77705 * 179.97438 * 18 17 15 34 34 H 1.08010 * 119.81364 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1479 2.0424 -1.1501 5 1 1.9510 3.1036 -1.1882 6 6 2.5581 1.3281 -2.3652 7 7 3.1861 0.2015 -2.2719 8 14 2.1732 2.0465 -4.0460 9 1 2.8207 3.3766 -4.1758 10 1 2.6901 1.1397 -5.1021 11 1 0.7033 2.1948 -4.1961 12 6 2.3366 1.9834 1.1630 13 8 2.7420 3.1291 1.1630 14 6 2.1930 1.2532 2.4336 15 6 0.9837 1.3061 3.1469 16 7 -0.0830 2.0478 2.6581 17 6 0.8594 0.6075 4.3412 18 6 1.9213 -0.1290 4.8251 19 6 3.1175 -0.1791 4.1266 20 6 3.2603 0.5057 2.9401 21 7 4.5408 0.4466 2.1999 22 8 5.5443 -0.2614 2.6755 23 8 4.6766 1.1022 1.0657 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.4569 -0.2707 -3.0748 30 1 -0.9180 2.0792 3.1506 31 1 0.0080 2.5379 1.8259 32 1 -0.0693 0.6406 4.8914 33 1 1.8196 -0.6700 5.7543 34 1 3.9420 -0.7591 4.5145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272551579.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:45 Heat of formation + Delta-G solvation = 38.883148 kcal Electronic energy + Delta-G solvation = -22876.453800 eV Core-core repulsion = 19393.836642 eV Total energy + Delta-G solvation = -3482.617158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.30528 -38.04720 -37.66332 -35.01769 -34.63197 -33.53834 -32.29099 -31.30549 -29.67250 -29.01430 -26.31923 -24.98742 -23.06807 -22.12618 -21.75344 -19.63610 -18.13341 -17.58131 -17.09607 -16.53730 -16.38224 -15.61738 -15.44349 -15.11198 -14.72134 -14.28594 -14.23426 -13.48552 -13.20443 -12.97487 -12.81310 -12.13956 -12.04208 -11.96451 -11.52384 -11.16968 -11.05366 -10.93932 -10.53953 -10.48595 -10.42504 -10.19462 -10.08013 -9.80172 -9.28575 -9.00805 -8.55816 -7.70429 -7.62953 -6.47689 -3.76537 -0.11157 1.26523 1.65066 1.82561 3.10812 3.19333 3.21489 3.55969 3.65227 3.83600 4.07444 4.56039 4.69868 4.83020 5.06060 5.16793 5.21253 5.29136 5.59707 5.84510 5.93286 6.02848 6.14884 6.19151 6.24589 6.26383 6.44397 6.66859 6.79989 7.14210 7.32784 7.35956 7.54296 7.69288 8.10562 8.42544 9.07871 9.33331 10.04989 10.49171 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.007731 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.145689 B = 3620.843522 C = 4306.386351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.087 3.913 3 N -0.387 5.387 4 C -0.340 4.340 5 H 0.098 0.902 6 C 0.049 3.951 7 N -0.814 5.814 8 Si 0.922 3.078 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.474 3.526 13 O -0.566 6.566 14 C -0.104 4.104 15 C 0.241 3.759 16 N -0.855 5.855 17 C -0.162 4.162 18 C -0.073 4.073 19 C -0.125 4.125 20 C 0.064 3.936 21 N -0.033 5.033 22 O -0.227 6.227 23 O -0.088 6.088 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.037 0.963 29 H 0.278 0.722 30 H 0.402 0.598 31 H 0.410 0.590 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.286 -3.707 9.726 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.038 4.038 3 N -0.102 5.102 4 C -0.470 4.470 5 H 0.116 0.884 6 C -0.166 4.166 7 N -0.446 5.446 8 Si 0.748 3.252 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.196 1.196 12 C 0.263 3.737 13 O -0.451 6.451 14 C -0.114 4.114 15 C 0.132 3.868 16 N -0.393 5.393 17 C -0.186 4.186 18 C -0.093 4.093 19 C -0.146 4.146 20 C -0.023 4.023 21 N 0.443 4.557 22 O -0.403 6.403 23 O -0.296 6.296 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.231 0.769 31 H 0.241 0.759 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.440 -3.403 10.003 14.169 hybrid contribution 0.059 0.191 -1.043 1.062 sum -9.382 -3.212 8.960 13.365 Atomic orbital electron populations 1.22179 0.97604 1.00413 1.01951 1.21704 0.92606 0.85928 1.03514 1.42243 1.51836 1.11585 1.04545 1.20165 1.48028 0.95035 0.83737 0.88424 1.27001 0.93459 0.95577 1.00529 1.68886 1.28610 1.15742 1.31393 0.86077 0.79209 0.79585 0.80317 1.19194 1.20843 1.19600 1.17611 0.84588 0.88558 0.82968 1.90630 1.50470 1.17918 1.86063 1.19794 0.91673 1.00507 0.99457 1.17455 0.86861 0.90841 0.91634 1.42368 1.13292 1.54510 1.29174 1.20865 1.00664 1.01062 0.95969 1.20801 0.91076 0.97970 0.99414 1.20692 0.99957 1.00687 0.93290 1.20043 0.83181 1.04135 0.94964 1.50407 1.03013 0.99926 1.02313 1.96169 1.30385 1.41329 1.72391 1.96481 1.89507 1.39872 1.03720 0.93340 0.93411 0.92006 0.86804 0.94428 0.91006 0.76911 0.75855 0.84539 0.84028 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.20 37.16 0.38 -2.51 16 2 C 0.09 1.91 5.67 -4.04 -0.02 1.89 16 3 N -0.39 -9.63 2.32 -114.54 -0.27 -9.89 16 4 C -0.34 -9.14 9.12 -13.46 -0.12 -9.26 16 5 H 0.10 2.73 7.75 -52.49 -0.41 2.33 16 6 C 0.05 1.25 5.17 -15.15 -0.08 1.17 16 7 N -0.81 -21.32 11.29 56.00 0.63 -20.69 16 8 Si 0.92 19.68 29.69 -169.99 -5.05 14.63 16 9 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 C 0.47 11.79 3.13 -12.60 -0.04 11.75 16 13 O -0.57 -16.29 16.70 -5.98 -0.10 -16.39 16 14 C -0.10 -2.13 3.85 -104.80 -0.40 -2.54 16 15 C 0.24 3.73 6.42 -83.60 -0.54 3.20 16 16 N -0.86 -11.17 7.55 32.56 0.25 -10.93 16 17 C -0.16 -1.89 9.88 -39.42 -0.39 -2.28 16 18 C -0.07 -0.84 10.03 -39.53 -0.40 -1.24 16 19 C -0.12 -1.91 9.56 -39.62 -0.38 -2.29 16 20 C 0.06 1.31 6.50 -79.54 -0.52 0.79 16 21 N -0.03 -0.80 4.98 34.16 0.17 -0.63 16 22 O -0.23 -5.26 19.14 -31.57 -0.60 -5.87 16 23 O -0.09 -2.48 16.80 -36.34 -0.61 -3.09 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.76 6.06 -51.93 -0.31 0.44 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.11 2.77 5.28 -51.93 -0.27 2.50 16 28 H 0.04 0.82 6.38 -51.93 -0.33 0.49 16 29 H 0.28 6.76 8.26 -40.82 -0.34 6.42 16 30 H 0.40 3.53 8.83 -40.82 -0.36 3.17 16 31 H 0.41 6.34 7.53 -40.82 -0.31 6.03 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.15 2.04 7.56 -52.48 -0.40 1.64 16 LS Contribution 299.40 15.07 4.51 4.51 Total: -1.00 -33.65 299.40 -6.79 -40.44 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -3.22 Total: 9.22 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.78 Total: -42.14 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.31 Total: -25.35 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.05 Total: 14.63 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.65 -6.79 -40.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272551579.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.326 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds