Wall clock time and date at job start Tue Mar 31 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46755 * 2 1 4 4 C 1.33295 * 120.00436 * 274.87540 * 3 2 1 5 5 H 1.08001 * 120.00075 * 145.17283 * 4 3 2 6 6 C 1.46795 * 120.00123 * 325.18247 * 4 3 2 7 7 N 1.29316 * 119.99712 * 338.34637 * 6 4 3 8 8 Si 1.86796 * 120.00172 * 158.35329 * 6 4 3 9 9 H 1.48506 * 109.47041 * 59.99705 * 8 6 4 10 10 H 1.48493 * 109.47336 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47303 * 299.99736 * 8 6 4 12 12 C 1.34780 * 119.99629 * 94.88590 * 3 2 1 13 13 O 1.21531 * 119.99700 * 179.97438 * 12 3 2 14 14 C 1.47252 * 120.00026 * 359.97438 * 12 3 2 15 15 C 1.40500 * 120.21486 * 270.00097 * 14 12 3 16 16 N 1.38805 * 120.18544 * 359.97438 * 15 14 12 17 17 C 1.38924 * 119.63493 * 179.70061 * 15 14 12 18 18 C 1.37994 * 120.06906 * 0.27807 * 17 15 14 19 19 C 1.38617 * 120.44042 * 359.97438 * 18 17 15 20 20 C 1.37739 * 120.37287 * 359.97438 * 19 18 17 21 21 N 1.48021 * 120.04074 * 180.02562 * 20 19 18 22 22 O 1.31700 * 119.99881 * 0.02562 * 21 20 19 23 23 O 1.31702 * 119.99688 * 180.02562 * 21 20 19 24 24 H 1.08996 * 109.46798 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47269 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47130 * 60.00005 * 1 2 3 27 27 H 1.09002 * 109.47054 * 240.00578 * 2 1 3 28 28 H 1.08991 * 109.47332 * 120.00218 * 2 1 3 29 29 H 0.97001 * 119.99652 * 179.97438 * 7 6 4 30 30 H 0.96998 * 120.00237 * 179.72480 * 16 15 14 31 31 H 0.97003 * 120.00027 * 359.44205 * 16 15 14 32 32 H 1.07994 * 119.96479 * 180.29459 * 17 15 14 33 33 H 1.07994 * 119.77705 * 179.97438 * 18 17 15 34 34 H 1.08010 * 119.81364 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1479 2.0424 -1.1501 5 1 1.9510 3.1036 -1.1882 6 6 2.5581 1.3281 -2.3652 7 7 3.1861 0.2015 -2.2719 8 14 2.1732 2.0465 -4.0460 9 1 2.8207 3.3766 -4.1758 10 1 2.6901 1.1397 -5.1021 11 1 0.7033 2.1948 -4.1961 12 6 2.3366 1.9834 1.1630 13 8 2.7420 3.1291 1.1630 14 6 2.1930 1.2532 2.4336 15 6 0.9837 1.3061 3.1469 16 7 -0.0830 2.0478 2.6581 17 6 0.8594 0.6075 4.3412 18 6 1.9213 -0.1290 4.8251 19 6 3.1175 -0.1791 4.1266 20 6 3.2603 0.5057 2.9401 21 7 4.5408 0.4466 2.1999 22 8 5.5443 -0.2614 2.6755 23 8 4.6766 1.1022 1.0657 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.4569 -0.2707 -3.0748 30 1 -0.9180 2.0792 3.1506 31 1 0.0080 2.5379 1.8259 32 1 -0.0693 0.6406 4.8914 33 1 1.8196 -0.6700 5.7543 34 1 3.9420 -0.7591 4.5145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272551579.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:43 Heat of formation + Delta-G solvation = 13.816770 kcal Electronic energy + Delta-G solvation = -22877.540760 eV Core-core repulsion = 19393.836642 eV Total energy + Delta-G solvation = -3483.704118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76478 -39.84922 -39.23579 -36.90680 -35.83978 -35.40072 -34.17905 -32.68264 -31.33908 -30.32686 -27.91014 -26.76646 -24.58500 -23.70195 -23.15456 -21.27947 -19.69581 -19.12003 -18.90268 -18.17569 -17.74533 -17.18021 -16.93604 -16.85173 -16.31137 -15.80104 -15.64260 -15.02620 -14.67342 -14.60997 -14.27524 -13.74127 -13.57347 -13.22343 -12.98689 -12.86582 -12.71442 -12.47536 -12.37882 -12.15643 -12.13087 -11.98598 -11.75556 -11.72837 -11.01975 -10.58488 -10.29844 -9.61263 -8.81216 -8.38688 -5.81718 -1.80479 0.04643 0.21152 0.27382 1.35839 1.39560 1.49529 1.93180 2.28076 2.38842 2.67473 2.92054 3.02892 3.53745 3.69021 3.85850 4.02929 4.06564 4.18346 4.35870 4.54997 4.65228 4.74610 4.82675 4.92547 4.96150 5.09733 5.22189 5.34552 5.46429 5.49695 5.69342 6.13083 6.13438 6.48581 6.77173 7.17888 7.49806 8.18678 8.58097 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.007731 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.145689 B = 3620.843522 C = 4306.386351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.091 3.909 3 N -0.394 5.394 4 C -0.388 4.388 5 H 0.066 0.934 6 C 0.014 3.986 7 N -0.846 5.846 8 Si 0.987 3.013 9 H -0.278 1.278 10 H -0.270 1.270 11 H -0.254 1.254 12 C 0.480 3.520 13 O -0.631 6.631 14 C -0.151 4.151 15 C 0.238 3.762 16 N -0.846 5.846 17 C -0.117 4.117 18 C -0.046 4.046 19 C -0.109 4.109 20 C 0.027 3.973 21 N -0.022 5.022 22 O -0.162 6.162 23 O -0.228 6.228 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.036 0.964 29 H 0.282 0.718 30 H 0.425 0.575 31 H 0.397 0.603 32 H 0.198 0.802 33 H 0.207 0.793 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 -6.266 14.119 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 N -0.107 5.107 4 C -0.517 4.517 5 H 0.084 0.916 6 C -0.197 4.197 7 N -0.478 5.478 8 Si 0.810 3.190 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.178 1.178 12 C 0.270 3.730 13 O -0.520 6.520 14 C -0.162 4.162 15 C 0.127 3.873 16 N -0.384 5.384 17 C -0.140 4.140 18 C -0.065 4.065 19 C -0.131 4.131 20 C -0.061 4.061 21 N 0.449 4.551 22 O -0.365 6.365 23 O -0.404 6.404 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.259 0.741 31 H 0.226 0.774 32 H 0.215 0.785 33 H 0.224 0.776 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.432 -5.812 14.157 19.716 hybrid contribution 0.968 0.737 -1.748 2.130 sum -11.464 -5.074 12.408 17.639 Atomic orbital electron populations 1.22067 0.94125 1.02352 1.02276 1.21656 0.95343 0.84363 1.01930 1.42265 1.52221 1.12106 1.04154 1.19984 1.51526 0.94238 0.86000 0.91594 1.27766 0.92669 0.95844 1.03452 1.68991 1.29513 1.16997 1.32337 0.85136 0.79709 0.78192 0.76005 1.20390 1.19435 1.17845 1.18096 0.82593 0.87742 0.84567 1.90542 1.52930 1.21071 1.87458 1.19508 0.94611 1.03134 0.98934 1.17770 0.85455 0.91493 0.92576 1.42384 1.13833 1.53472 1.28742 1.21671 1.02818 0.96545 0.92922 1.21613 0.88448 0.96214 1.00251 1.21302 1.02404 0.98578 0.90781 1.20616 0.81280 1.07432 0.96750 1.51041 1.04208 0.97935 1.01870 1.96075 1.31666 1.37996 1.70788 1.96548 1.91248 1.45526 1.07074 0.90375 0.91483 0.93282 0.89623 0.94547 0.90675 0.74144 0.77443 0.78478 0.77565 0.81396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 10.20 71.98 0.73 -4.56 16 2 C 0.09 4.21 5.67 86.38 0.49 4.70 16 3 N -0.39 -21.25 2.32 -634.58 -1.47 -22.72 16 4 C -0.39 -23.02 9.12 86.71 0.79 -22.23 16 5 H 0.07 4.17 7.75 -2.91 -0.02 4.15 16 6 C 0.01 0.78 5.17 87.30 0.45 1.23 16 7 N -0.85 -47.80 11.29 23.26 0.26 -47.53 16 8 Si 0.99 43.08 29.69 68.60 2.04 45.11 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 12 C 0.48 25.72 3.13 86.61 0.27 25.99 16 13 O -0.63 -40.08 16.70 7.01 0.12 -39.96 16 14 C -0.15 -6.23 3.85 -19.98 -0.08 -6.31 16 15 C 0.24 6.55 6.42 38.75 0.25 6.80 16 16 N -0.85 -19.96 7.55 -50.91 -0.38 -20.34 16 17 C -0.12 -1.80 9.88 22.38 0.22 -1.58 16 18 C -0.05 -0.67 10.03 22.30 0.22 -0.45 16 19 C -0.11 -2.79 9.56 22.24 0.21 -2.57 16 20 C 0.03 1.07 6.50 36.63 0.24 1.31 16 21 N -0.02 -1.13 4.98 -45.84 -0.23 -1.35 16 22 O -0.16 -7.41 19.14 3.51 0.07 -7.34 16 23 O -0.23 -14.11 16.80 8.07 0.14 -13.98 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.07 2.05 6.06 -2.39 -0.01 2.03 16 26 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.09 4.47 5.28 -2.39 -0.01 4.46 16 28 H 0.04 1.64 6.38 -2.39 -0.02 1.63 16 29 H 0.28 14.63 8.26 -92.71 -0.77 13.86 16 30 H 0.42 5.57 8.83 -92.71 -0.82 4.75 16 31 H 0.40 12.31 7.53 -92.71 -0.70 11.62 16 32 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 34 H 0.17 3.63 7.56 -2.91 -0.02 3.61 16 Total: -1.00 -89.88 299.40 4.00 -85.88 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.34 Total: 19.90 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 3.81 Total: 2.34 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -1.82 Total: -91.95 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: 0.32 Total: -61.28 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.04 Total: 45.11 kcal Total: -89.88 4.00 -85.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272551579.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.697 kcal (2) G-P(sol) polarization free energy of solvation -89.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds