Wall clock time and date at job start Tue Mar 31 2020 00:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46844 * 231.66041 * 3 2 1 5 5 C 1.37097 * 119.99865 * 269.99897 * 4 3 2 6 6 H 1.07992 * 120.00269 * 202.67519 * 5 4 3 7 7 C 1.38960 * 119.99727 * 22.67095 * 5 4 3 8 8 N 1.31403 * 120.00180 * 352.44491 * 7 5 4 9 9 Si 1.86804 * 119.99565 * 172.43938 * 7 5 4 10 10 H 1.48500 * 109.47024 * 60.00297 * 9 7 5 11 11 H 1.48502 * 109.46647 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46916 * 300.00132 * 9 7 5 13 13 C 1.34776 * 120.00070 * 90.00347 * 4 3 2 14 14 O 1.21290 * 119.99935 * 5.10103 * 13 4 3 15 15 C 1.50698 * 119.99797 * 185.09979 * 13 4 3 16 16 N 1.46495 * 109.47207 * 174.81019 * 15 13 4 17 17 C 1.34770 * 124.17842 * 90.02229 * 16 15 13 18 18 O 1.21235 * 127.15417 * 359.93716 * 17 16 15 19 19 C 1.51588 * 105.68395 * 179.97438 * 17 16 15 20 20 N 1.47305 * 103.59480 * 359.97438 * 19 17 16 21 21 C 1.46496 * 126.68998 * 180.02562 * 20 19 17 22 22 C 1.33794 * 124.17761 * 269.72773 * 16 15 13 23 23 O 1.21534 * 123.77214 * 0.03407 * 22 16 15 24 24 H 4.40641 * 5.51584 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46985 * 111.65846 * 3 2 1 26 26 H 1.09001 * 109.47188 * 351.66059 * 3 2 1 27 27 H 0.96997 * 120.00119 * 185.01830 * 8 7 5 28 28 H 1.09009 * 109.47166 * 54.80968 * 15 13 4 29 29 H 1.09001 * 109.47358 * 294.81532 * 15 13 4 30 30 H 1.08992 * 110.59717 * 118.53535 * 19 17 16 31 31 H 1.09008 * 110.59306 * 241.47360 * 19 17 16 32 32 H 1.09004 * 109.47178 * 90.00771 * 21 20 19 33 33 H 1.09000 * 109.47281 * 210.00279 * 21 20 19 34 34 H 1.09001 * 109.47616 * 330.00444 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8577 1.0834 5 6 3.3617 2.1900 0.8538 6 1 4.0405 2.7391 1.4894 7 6 2.7194 2.8337 -0.1969 8 7 2.0116 2.1389 -1.0589 9 14 2.8619 4.6869 -0.3839 10 1 4.2894 5.0588 -0.5542 11 1 2.0902 5.1250 -1.5745 12 1 2.3189 5.3499 0.8289 13 6 3.3588 0.3364 2.3058 14 8 3.2465 -0.8577 2.4858 15 6 3.7497 1.2374 3.4488 16 7 3.8149 0.4560 4.6862 17 6 4.9243 -0.1667 5.1308 18 8 6.0150 -0.1862 4.6018 19 6 4.5245 -0.8386 6.4296 20 7 3.1031 -0.4825 6.5803 21 6 2.2140 -0.8748 7.6765 22 6 2.7819 0.2771 5.5174 23 8 1.6761 0.7459 5.3315 24 1 -1.0502 0.0000 -0.0003 25 1 3.0091 0.3801 -0.9551 26 1 3.0098 -1.0160 0.1491 27 1 1.6237 2.5766 -1.8326 28 1 3.0083 2.0290 3.5575 29 1 4.7254 1.6790 3.2460 30 1 4.6437 -1.9194 6.3547 31 1 5.1086 -0.4440 7.2611 32 1 2.2603 -0.1263 8.4676 33 1 1.1915 -0.9492 7.3062 34 1 2.5285 -1.8408 8.0716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282045884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:52 Heat of formation + Delta-G solvation = 12.582066 kcal Electronic energy + Delta-G solvation = -22070.403454 eV Core-core repulsion = 18586.645795 eV Total energy + Delta-G solvation = -3483.757659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03573 -38.64443 -38.28758 -35.92932 -35.41459 -34.56717 -31.85037 -31.50405 -29.94087 -27.68933 -26.42742 -25.74815 -24.31419 -22.17651 -20.45199 -19.29297 -18.04106 -17.35466 -17.02830 -16.45881 -16.30328 -16.04003 -15.17159 -14.79680 -14.44087 -14.24188 -14.21802 -14.12437 -13.73515 -13.57521 -12.76935 -12.74411 -12.55557 -12.46584 -11.98664 -11.35853 -11.25542 -11.19549 -10.78629 -10.61137 -10.52275 -9.97458 -9.81287 -9.54669 -9.23299 -8.97231 -8.63237 -8.39331 -7.96458 -6.37484 -4.09266 1.89897 2.25724 3.07288 3.09951 3.17580 3.18247 3.33360 3.66490 3.90535 4.10629 4.18945 4.34332 4.74342 4.92790 4.97509 4.98695 5.11125 5.34150 5.50605 5.58889 5.74425 5.77873 5.94084 6.06559 6.09855 6.51353 6.72410 7.08074 7.24956 7.26605 7.37270 7.62329 7.62672 8.23812 8.33896 8.93899 9.03068 9.31857 9.72054 10.55694 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.005704 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.340602 B = 4907.950245 C = 5222.505403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.089 4.089 3 C 0.238 3.762 4 N -0.434 5.434 5 C -0.348 4.348 6 H 0.100 0.900 7 C 0.043 3.957 8 N -0.858 5.858 9 Si 0.927 3.073 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.450 3.550 14 O -0.598 6.598 15 C 0.118 3.882 16 N -0.555 5.555 17 C 0.527 3.473 18 O -0.473 6.473 19 C 0.068 3.932 20 N -0.635 5.635 21 C 0.125 3.875 22 C 0.705 3.295 23 O -0.537 6.537 24 H 0.196 0.804 25 H 0.123 0.877 26 H 0.063 0.937 27 H 0.273 0.727 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 -2.455 12.644 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.091 4.091 3 C 0.116 3.884 4 N -0.152 5.152 5 C -0.475 4.475 6 H 0.117 0.883 7 C -0.163 4.163 8 N -0.495 5.495 9 Si 0.753 3.247 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.237 3.763 14 O -0.483 6.483 15 C -0.005 4.005 16 N -0.299 5.299 17 C 0.314 3.686 18 O -0.343 6.343 19 C -0.059 4.059 20 N -0.376 5.376 21 C -0.017 4.017 22 C 0.407 3.593 23 O -0.410 6.410 24 H 0.214 0.786 25 H 0.140 0.860 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.856 -2.719 12.186 12.808 hybrid contribution -0.292 1.070 -0.320 1.154 sum 2.564 -1.649 11.865 12.251 Atomic orbital electron populations 1.24182 0.95339 1.06636 1.04301 1.23166 0.94345 0.94872 0.96710 1.18309 0.84058 0.92888 0.93135 1.43575 1.55987 1.09076 1.06543 1.19594 1.26302 0.83938 1.17654 0.88250 1.25399 0.94273 1.00402 0.96202 1.69942 1.31911 1.35937 1.11685 0.85996 0.78491 0.82044 0.78182 1.19711 1.20732 1.19619 1.20156 0.83575 0.88568 0.83952 1.90549 1.58704 1.15702 1.83394 1.21388 1.05295 0.93423 0.80443 1.45945 1.11939 1.49153 1.22841 1.20735 0.83915 0.77820 0.86155 1.90787 1.22284 1.58554 1.62709 1.22435 0.83090 1.03047 0.97290 1.47404 1.11279 1.54389 1.24553 1.21435 0.93674 0.99878 0.86667 1.15795 0.84045 0.79579 0.79905 1.90976 1.20447 1.53540 1.76015 0.78641 0.85952 0.91955 0.91607 0.86286 0.87025 0.86332 0.86486 0.92311 0.90095 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.80 19.25 29.55 0.57 -6.24 16 2 C -0.09 -2.29 11.37 -37.12 -0.42 -2.72 16 3 C 0.24 6.01 5.21 -6.83 -0.04 5.98 16 4 N -0.43 -11.11 2.58 -117.93 -0.30 -11.41 16 5 C -0.35 -8.62 9.01 -14.93 -0.13 -8.75 16 6 H 0.10 2.25 6.71 -52.49 -0.35 1.90 16 7 C 0.04 1.07 5.40 -17.47 -0.09 0.97 16 8 N -0.86 -21.96 8.37 55.50 0.46 -21.50 16 9 Si 0.93 19.18 29.56 -169.99 -5.03 14.15 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 C 0.45 11.25 7.68 -10.99 -0.08 11.17 16 14 O -0.60 -16.28 15.99 5.55 0.09 -16.20 16 15 C 0.12 2.45 4.73 -5.20 -0.02 2.43 16 16 N -0.55 -10.44 2.10 -122.02 -0.26 -10.70 16 17 C 0.53 8.65 8.32 -10.55 -0.09 8.57 16 18 O -0.47 -8.91 17.76 5.60 0.10 -8.81 16 19 C 0.07 0.74 7.66 -4.32 -0.03 0.70 16 20 N -0.64 -8.34 3.42 -187.95 -0.64 -8.98 16 21 C 0.12 1.11 11.17 59.84 0.67 1.78 16 22 C 0.70 12.96 8.31 -88.01 -0.73 12.23 16 23 O -0.54 -11.81 17.15 5.34 0.09 -11.72 16 24 H 0.20 3.85 7.80 -54.08 -0.42 3.43 16 25 H 0.12 3.10 6.29 -51.93 -0.33 2.78 16 26 H 0.06 1.54 7.36 -51.93 -0.38 1.16 16 27 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 28 H 0.12 2.45 7.75 -51.92 -0.40 2.05 16 29 H 0.11 2.09 7.60 -51.93 -0.39 1.70 16 30 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.12 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.83 8.03 -51.93 -0.42 0.42 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -34.50 308.81 -4.76 -39.26 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.52 Total: 5.12 kcal Atomic # 6 Polarization: 26.53 SS G_CDS: -0.41 Total: 26.12 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.74 Total: -52.59 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: 0.28 Total: -36.73 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.50 -4.76 -39.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282045884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.846 kcal (2) G-P(sol) polarization free energy of solvation -34.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds