Wall clock time and date at job start Tue Mar 31 2020 00:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46844 * 231.66041 * 3 2 1 5 5 C 1.37097 * 119.99865 * 269.99897 * 4 3 2 6 6 H 1.07992 * 120.00269 * 202.67519 * 5 4 3 7 7 C 1.38960 * 119.99727 * 22.67095 * 5 4 3 8 8 N 1.31403 * 120.00180 * 352.44491 * 7 5 4 9 9 Si 1.86804 * 119.99565 * 172.43938 * 7 5 4 10 10 H 1.48500 * 109.47024 * 60.00297 * 9 7 5 11 11 H 1.48502 * 109.46647 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46916 * 300.00132 * 9 7 5 13 13 C 1.34776 * 120.00070 * 90.00347 * 4 3 2 14 14 O 1.21290 * 119.99935 * 5.10103 * 13 4 3 15 15 C 1.50698 * 119.99797 * 185.09979 * 13 4 3 16 16 N 1.46495 * 109.47207 * 174.81019 * 15 13 4 17 17 C 1.34770 * 124.17842 * 90.02229 * 16 15 13 18 18 O 1.21235 * 127.15417 * 359.93716 * 17 16 15 19 19 C 1.51588 * 105.68395 * 179.97438 * 17 16 15 20 20 N 1.47305 * 103.59480 * 359.97438 * 19 17 16 21 21 C 1.46496 * 126.68998 * 180.02562 * 20 19 17 22 22 C 1.33794 * 124.17761 * 269.72773 * 16 15 13 23 23 O 1.21534 * 123.77214 * 0.03407 * 22 16 15 24 24 H 4.40641 * 5.51584 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46985 * 111.65846 * 3 2 1 26 26 H 1.09001 * 109.47188 * 351.66059 * 3 2 1 27 27 H 0.96997 * 120.00119 * 185.01830 * 8 7 5 28 28 H 1.09009 * 109.47166 * 54.80968 * 15 13 4 29 29 H 1.09001 * 109.47358 * 294.81532 * 15 13 4 30 30 H 1.08992 * 110.59717 * 118.53535 * 19 17 16 31 31 H 1.09008 * 110.59306 * 241.47360 * 19 17 16 32 32 H 1.09004 * 109.47178 * 90.00771 * 21 20 19 33 33 H 1.09000 * 109.47281 * 210.00279 * 21 20 19 34 34 H 1.09001 * 109.47616 * 330.00444 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8577 1.0834 5 6 3.3617 2.1900 0.8538 6 1 4.0405 2.7391 1.4894 7 6 2.7194 2.8337 -0.1969 8 7 2.0116 2.1389 -1.0589 9 14 2.8619 4.6869 -0.3839 10 1 4.2894 5.0588 -0.5542 11 1 2.0902 5.1250 -1.5745 12 1 2.3189 5.3499 0.8289 13 6 3.3588 0.3364 2.3058 14 8 3.2465 -0.8577 2.4858 15 6 3.7497 1.2374 3.4488 16 7 3.8149 0.4560 4.6862 17 6 4.9243 -0.1667 5.1308 18 8 6.0150 -0.1862 4.6018 19 6 4.5245 -0.8386 6.4296 20 7 3.1031 -0.4825 6.5803 21 6 2.2140 -0.8748 7.6765 22 6 2.7819 0.2771 5.5174 23 8 1.6761 0.7459 5.3315 24 1 -1.0502 0.0000 -0.0003 25 1 3.0091 0.3801 -0.9551 26 1 3.0098 -1.0160 0.1491 27 1 1.6237 2.5766 -1.8326 28 1 3.0083 2.0290 3.5575 29 1 4.7254 1.6790 3.2460 30 1 4.6437 -1.9194 6.3547 31 1 5.1086 -0.4440 7.2611 32 1 2.2603 -0.1263 8.4676 33 1 1.1915 -0.9492 7.3062 34 1 2.5285 -1.8408 8.0716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282045884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:52 Heat of formation + Delta-G solvation = -11.199744 kcal Electronic energy + Delta-G solvation = -22071.434711 eV Core-core repulsion = 18586.645795 eV Total energy + Delta-G solvation = -3484.788915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.33317 -40.53176 -39.65996 -37.27202 -37.22738 -36.02569 -33.76986 -33.42941 -31.20562 -29.14637 -27.91753 -27.15342 -26.12251 -23.41728 -21.92702 -21.01776 -19.79042 -18.89261 -18.60789 -17.96812 -17.71283 -17.65582 -16.62522 -16.17989 -16.08821 -16.04740 -15.75791 -15.41531 -14.98677 -14.91736 -14.58406 -14.37549 -13.93558 -13.40359 -13.26041 -13.17145 -13.04071 -12.92739 -12.60785 -12.17633 -12.01343 -11.45635 -11.42867 -11.30877 -11.15249 -10.59253 -10.32843 -9.93481 -9.91808 -8.25910 -6.04749 0.63946 1.01131 1.41345 1.47159 1.57063 1.74912 1.90615 2.08065 2.11790 2.29615 2.39238 3.02526 3.06732 3.13425 3.74570 3.88522 4.11623 4.16562 4.28000 4.32699 4.38068 4.44781 4.70783 4.74258 4.90893 5.02232 5.07933 5.36142 5.37555 5.43743 5.69829 6.10715 6.30385 6.37166 6.98925 7.02060 7.08675 7.38682 7.78793 8.67184 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.005704 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.340602 B = 4907.950245 C = 5222.505403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.136 4.136 3 C 0.240 3.760 4 N -0.443 5.443 5 C -0.368 4.368 6 H 0.116 0.884 7 C 0.001 3.999 8 N -0.881 5.881 9 Si 0.996 3.004 10 H -0.259 1.259 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.436 3.564 14 O -0.630 6.630 15 C 0.128 3.872 16 N -0.567 5.567 17 C 0.515 3.485 18 O -0.505 6.505 19 C 0.082 3.918 20 N -0.621 5.621 21 C 0.116 3.884 22 C 0.691 3.309 23 O -0.588 6.588 24 H 0.234 0.766 25 H 0.115 0.885 26 H 0.055 0.945 27 H 0.272 0.728 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 -2.125 14.748 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.160 5.160 5 C -0.494 4.494 6 H 0.134 0.866 7 C -0.202 4.202 8 N -0.517 5.517 9 Si 0.819 3.181 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.195 1.195 13 C 0.224 3.776 14 O -0.518 6.518 15 C 0.003 3.997 16 N -0.311 5.311 17 C 0.305 3.695 18 O -0.378 6.378 19 C -0.042 4.042 20 N -0.360 5.360 21 C -0.023 4.023 22 C 0.393 3.607 23 O -0.465 6.465 24 H 0.251 0.749 25 H 0.133 0.867 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.187 0.813 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.310 -2.424 14.345 14.920 hybrid contribution -0.450 0.889 -0.970 1.390 sum 2.860 -1.535 13.375 13.763 Atomic orbital electron populations 1.25107 0.96370 1.04810 1.02487 1.23523 0.95140 0.96611 0.98460 1.18189 0.84504 0.92509 0.92986 1.43831 1.55694 1.09587 1.06897 1.20059 1.27180 0.83826 1.18342 0.86629 1.26276 0.93711 1.04625 0.95614 1.70079 1.32324 1.37429 1.11909 0.84947 0.78986 0.76455 0.77752 1.18295 1.20960 1.19455 1.20878 0.83204 0.88805 0.84683 1.90496 1.60152 1.17151 1.84016 1.21142 1.05667 0.92715 0.80209 1.46119 1.13273 1.49494 1.22225 1.21739 0.82849 0.77212 0.87723 1.90766 1.23242 1.59597 1.64151 1.22741 0.81824 1.04294 0.95327 1.47680 1.12715 1.52168 1.23465 1.21824 0.92178 1.02738 0.85586 1.16133 0.83285 0.80219 0.81061 1.90926 1.22247 1.55888 1.77434 0.74937 0.86708 0.92695 0.91721 0.86752 0.85525 0.83178 0.81275 0.90019 0.92055 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.75 19.25 74.32 1.43 -11.32 16 2 C -0.14 -7.13 11.37 31.13 0.35 -6.78 16 3 C 0.24 12.64 5.21 84.57 0.44 13.08 16 4 N -0.44 -23.36 2.58 -645.40 -1.67 -25.03 16 5 C -0.37 -18.45 9.01 84.04 0.76 -17.69 16 6 H 0.12 5.25 6.71 -2.91 -0.02 5.23 16 7 C 0.00 0.06 5.40 84.93 0.46 0.52 16 8 N -0.88 -45.60 8.37 21.67 0.18 -45.42 16 9 Si 1.00 38.98 29.56 68.60 2.03 41.01 16 10 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 11 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 13 C 0.44 22.45 7.68 87.66 0.67 23.12 16 14 O -0.63 -35.47 15.99 -3.06 -0.05 -35.52 16 15 C 0.13 5.39 4.73 85.63 0.40 5.80 16 16 N -0.57 -21.27 2.10 -777.20 -1.63 -22.90 16 17 C 0.51 16.21 8.32 87.94 0.73 16.94 16 18 O -0.51 -18.69 17.76 -2.89 -0.05 -18.74 16 19 C 0.08 1.47 7.66 85.76 0.66 2.12 16 20 N -0.62 -14.61 3.42 -866.97 -2.96 -17.57 16 21 C 0.12 1.68 11.17 127.77 1.43 3.11 16 22 C 0.69 25.14 8.31 179.44 1.49 26.64 16 23 O -0.59 -26.42 17.15 -3.82 -0.07 -26.49 16 24 H 0.23 8.73 7.80 -4.41 -0.03 8.69 16 25 H 0.12 6.10 6.29 -2.39 -0.02 6.08 16 26 H 0.06 2.88 7.36 -2.39 -0.02 2.86 16 27 H 0.27 13.48 8.32 -92.71 -0.77 12.71 16 28 H 0.11 4.87 7.75 -2.38 -0.02 4.85 16 29 H 0.13 4.83 7.60 -2.39 -0.02 4.81 16 30 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.17 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.06 1.17 8.03 -2.39 -0.02 1.15 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -78.54 308.81 5.74 -72.80 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.13 Total: 22.32 kcal Atomic # 6 Polarization: 46.71 SS G_CDS: 8.83 Total: 55.54 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -6.08 Total: -110.92 kcal Atomic # 8 Polarization: -80.58 SS G_CDS: -0.17 Total: -80.75 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -78.54 5.74 -72.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282045884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.602 kcal (2) G-P(sol) polarization free energy of solvation -78.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds