Wall clock time and date at job start Tue Mar 31 2020 00:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00177 * 2 1 4 4 O 1.21294 * 120.00114 * 185.28423 * 3 2 1 5 5 C 1.50694 * 120.00167 * 5.29117 * 3 2 1 6 6 C 1.53000 * 109.47496 * 179.97438 * 5 3 2 7 7 C 1.50693 * 109.47477 * 179.97438 * 6 5 3 8 8 H 1.08003 * 120.00256 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00087 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00148 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99799 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47275 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47184 * 120.00342 * 11 9 7 14 14 H 1.48501 * 109.47293 * 240.00285 * 11 9 7 15 15 C 1.39955 * 120.00077 * 179.97438 * 2 1 3 16 16 C 1.39277 * 120.48670 * 112.99212 * 15 2 1 17 17 C 1.38504 * 118.36122 * 179.75248 * 16 15 2 18 18 C 1.38271 * 119.23738 * 0.25731 * 17 16 15 19 19 N 1.48018 * 119.54072 * 179.97438 * 18 17 16 20 20 O 1.21794 * 120.00227 * 359.97438 * 19 18 17 21 21 O 1.21809 * 119.99769 * 179.97438 * 19 18 17 22 22 N 1.31859 * 120.91629 * 359.97438 * 18 17 16 23 23 C 1.31821 * 121.79803 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.47510 * 270.00223 * 1 2 3 25 25 H 1.09003 * 109.46583 * 30.00036 * 1 2 3 26 26 H 1.08997 * 109.47372 * 149.99527 * 1 2 3 27 27 H 1.09004 * 109.47160 * 299.99441 * 5 3 2 28 28 H 1.08995 * 109.47521 * 59.99879 * 5 3 2 29 29 H 1.09000 * 109.47373 * 300.00314 * 6 5 3 30 30 H 1.09009 * 109.47214 * 59.99748 * 6 5 3 31 31 H 0.96998 * 119.99740 * 180.02562 * 10 9 7 32 32 H 1.08004 * 120.82140 * 0.02907 * 16 15 2 33 33 H 1.08006 * 120.38441 * 180.23123 * 17 16 15 34 34 H 1.08000 * 119.66678 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3480 1.1694 -0.0967 5 6 1.3903 2.4695 0.1203 6 6 2.3836 3.6330 0.0952 7 6 1.6349 4.9353 0.2149 8 1 0.5583 4.9334 0.3008 9 6 2.3245 6.1293 0.2159 10 7 3.6355 6.1317 0.1118 11 14 1.3964 7.7436 0.3650 12 1 -0.0594 7.4699 0.4685 13 1 1.8515 8.4658 1.5802 14 1 1.6595 8.5785 -0.8346 15 6 2.1648 -1.2120 0.0005 16 6 2.9241 -1.5900 -1.1042 17 6 3.6029 -2.7963 -1.0543 18 6 3.5014 -3.5820 0.0789 19 7 4.2236 -4.8727 0.1392 20 8 4.9011 -5.2361 -0.8054 21 8 4.1404 -5.5712 1.1336 22 7 2.7701 -3.1976 1.1066 23 6 2.1083 -2.0576 1.1004 24 1 -0.3634 0.0000 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5139 27 1 0.6947 2.5671 -0.7132 28 1 0.8368 2.4850 1.0592 29 1 3.0789 3.5352 0.9289 30 1 2.9375 3.6176 -0.8435 31 1 4.1205 6.9717 0.1128 32 1 2.9857 -0.9561 -1.9764 33 1 4.2044 -3.1196 -1.8911 34 1 1.5193 -1.7767 1.9610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292338518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:38 Heat of formation + Delta-G solvation = 7.641639 kcal Electronic energy + Delta-G solvation = -20673.017096 eV Core-core repulsion = 17189.045204 eV Total energy + Delta-G solvation = -3483.971892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.46174 -41.18536 -39.47392 -36.77603 -36.03792 -33.77500 -33.14161 -32.07621 -30.86917 -27.67990 -26.89617 -25.72756 -24.33340 -23.44559 -21.70543 -19.93122 -19.38372 -19.01209 -17.83843 -17.60174 -17.23869 -16.99280 -15.91014 -15.62079 -15.34228 -14.60254 -14.48478 -14.34107 -13.82774 -13.58232 -13.26856 -12.77935 -12.47098 -12.33339 -11.82020 -11.58192 -11.35372 -11.31688 -11.06694 -10.77065 -10.72289 -10.61012 -10.21306 -10.18075 -9.90857 -9.53180 -9.24121 -9.01162 -8.46748 -6.10088 -4.15639 -0.59263 0.43039 0.88138 0.94276 2.53156 2.64452 2.90638 3.23530 3.31360 3.33588 3.61905 3.96225 4.11520 4.29715 4.35543 4.71777 4.85973 4.93332 5.03560 5.10735 5.25521 5.34851 5.39560 5.53101 5.90134 5.92836 6.04539 6.28269 6.55367 6.75464 7.06537 7.50465 7.56986 7.63622 7.88921 8.10552 8.27658 8.91996 9.49186 11.00746 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041387 B = 0.003088 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.382023 B = 9063.984390 C = 9386.670724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.593 5.593 3 C 0.515 3.485 4 O -0.511 6.511 5 C -0.124 4.124 6 C 0.035 3.965 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.888 5.888 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.158 3.842 16 C -0.063 4.063 17 C -0.081 4.081 18 C 0.155 3.845 19 N 0.030 4.970 20 O -0.157 6.157 21 O -0.122 6.122 22 N -0.420 5.420 23 C 0.117 3.883 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 -16.606 -2.232 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.327 5.327 3 C 0.307 3.693 4 O -0.383 6.383 5 C -0.163 4.163 6 C -0.002 4.002 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.143 4.143 10 N -0.526 5.526 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.063 3.937 16 C -0.091 4.091 17 C -0.103 4.103 18 C -0.061 4.061 19 N 0.553 4.447 20 O -0.368 6.368 21 O -0.346 6.346 22 N -0.132 5.132 23 C -0.046 4.046 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.968 -16.344 -1.668 17.846 hybrid contribution -0.251 1.095 -0.519 1.238 sum -7.218 -15.249 -2.187 17.013 Atomic orbital electron populations 1.21984 0.76983 1.04230 1.03069 1.46046 1.07662 1.02900 1.76086 1.22104 0.88552 0.84846 0.73847 1.90739 1.14607 1.86634 1.46296 1.21970 1.00904 0.90508 1.02943 1.18957 0.93155 0.89359 0.98760 1.21184 0.93339 0.90884 1.51434 0.92413 1.25030 0.94840 0.99359 0.95094 1.69996 1.06319 1.26715 1.49590 0.86514 0.79938 0.83629 0.77756 1.19690 1.20936 1.20940 1.19054 0.93468 0.87994 0.93163 1.21936 0.94222 0.94141 0.98827 1.21715 0.97896 0.92981 0.97740 1.21503 1.01446 0.88684 0.94497 1.43350 0.99454 1.01504 1.00357 1.94555 1.37399 1.75583 1.29237 1.94581 1.66418 1.51564 1.22064 1.66423 1.04497 1.16385 1.25932 1.22984 0.96501 0.87702 0.97431 0.91514 0.88974 0.90998 0.89517 0.89441 0.95727 0.95736 0.92842 0.81940 0.81404 0.79982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.11 59.85 0.60 1.17 16 2 N -0.59 -6.78 2.95 -120.71 -0.36 -7.14 16 3 C 0.51 8.39 7.56 -10.99 -0.08 8.31 16 4 O -0.51 -10.59 15.55 5.55 0.09 -10.50 16 5 C -0.12 -2.14 4.32 -27.89 -0.12 -2.26 16 6 C 0.04 0.87 4.26 -27.89 -0.12 0.75 16 7 C -0.53 -14.01 9.11 -34.44 -0.31 -14.33 16 8 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 11 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.16 1.77 4.84 -83.54 -0.40 1.36 16 16 C -0.06 -0.67 9.47 -39.10 -0.37 -1.04 16 17 C -0.08 -0.83 9.59 -39.47 -0.38 -1.21 16 18 C 0.16 1.95 7.77 -146.18 -1.14 0.82 16 19 N 0.03 0.42 4.45 32.88 0.15 0.57 16 20 O -0.16 -2.10 18.42 -29.46 -0.54 -2.64 16 21 O -0.12 -1.82 19.02 -29.46 -0.56 -2.38 16 22 N -0.42 -5.33 10.03 -10.13 -0.10 -5.43 16 23 C 0.12 1.24 11.01 -17.33 -0.19 1.05 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 0.63 6.48 -51.93 -0.34 0.29 16 26 H 0.07 0.37 8.05 -51.93 -0.42 -0.04 16 27 H 0.09 1.31 7.24 -51.93 -0.38 0.93 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.02 0.66 8.10 -51.92 -0.42 0.24 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.17 1.34 7.60 -52.48 -0.40 0.94 16 34 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -33.69 312.09 -7.12 -40.81 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -3.60 Total: -4.27 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.61 Total: -3.85 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.43 Total: -37.48 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.02 Total: -15.53 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.69 -7.12 -40.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292338518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.452 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds