Wall clock time and date at job start Tue Mar 31 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00177 * 2 1 4 4 O 1.21294 * 120.00114 * 185.28423 * 3 2 1 5 5 C 1.50694 * 120.00167 * 5.29117 * 3 2 1 6 6 C 1.53000 * 109.47496 * 179.97438 * 5 3 2 7 7 C 1.50693 * 109.47477 * 179.97438 * 6 5 3 8 8 H 1.08003 * 120.00256 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00087 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00148 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99799 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47275 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47184 * 120.00342 * 11 9 7 14 14 H 1.48501 * 109.47293 * 240.00285 * 11 9 7 15 15 C 1.39955 * 120.00077 * 179.97438 * 2 1 3 16 16 C 1.39277 * 120.48670 * 112.99212 * 15 2 1 17 17 C 1.38504 * 118.36122 * 179.75248 * 16 15 2 18 18 C 1.38271 * 119.23738 * 0.25731 * 17 16 15 19 19 N 1.48018 * 119.54072 * 179.97438 * 18 17 16 20 20 O 1.21794 * 120.00227 * 359.97438 * 19 18 17 21 21 O 1.21809 * 119.99769 * 179.97438 * 19 18 17 22 22 N 1.31859 * 120.91629 * 359.97438 * 18 17 16 23 23 C 1.31821 * 121.79803 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.47510 * 270.00223 * 1 2 3 25 25 H 1.09003 * 109.46583 * 30.00036 * 1 2 3 26 26 H 1.08997 * 109.47372 * 149.99527 * 1 2 3 27 27 H 1.09004 * 109.47160 * 299.99441 * 5 3 2 28 28 H 1.08995 * 109.47521 * 59.99879 * 5 3 2 29 29 H 1.09000 * 109.47373 * 300.00314 * 6 5 3 30 30 H 1.09009 * 109.47214 * 59.99748 * 6 5 3 31 31 H 0.96998 * 119.99740 * 180.02562 * 10 9 7 32 32 H 1.08004 * 120.82140 * 0.02907 * 16 15 2 33 33 H 1.08006 * 120.38441 * 180.23123 * 17 16 15 34 34 H 1.08000 * 119.66678 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3480 1.1694 -0.0967 5 6 1.3903 2.4695 0.1203 6 6 2.3836 3.6330 0.0952 7 6 1.6349 4.9353 0.2149 8 1 0.5583 4.9334 0.3008 9 6 2.3245 6.1293 0.2159 10 7 3.6355 6.1317 0.1118 11 14 1.3964 7.7436 0.3650 12 1 -0.0594 7.4699 0.4685 13 1 1.8515 8.4658 1.5802 14 1 1.6595 8.5785 -0.8346 15 6 2.1648 -1.2120 0.0005 16 6 2.9241 -1.5900 -1.1042 17 6 3.6029 -2.7963 -1.0543 18 6 3.5014 -3.5820 0.0789 19 7 4.2236 -4.8727 0.1392 20 8 4.9011 -5.2361 -0.8054 21 8 4.1404 -5.5712 1.1336 22 7 2.7701 -3.1976 1.1066 23 6 2.1083 -2.0576 1.1004 24 1 -0.3634 0.0000 1.0276 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5139 27 1 0.6947 2.5671 -0.7132 28 1 0.8368 2.4850 1.0592 29 1 3.0789 3.5352 0.9289 30 1 2.9375 3.6176 -0.8435 31 1 4.1205 6.9717 0.1128 32 1 2.9857 -0.9561 -1.9764 33 1 4.2044 -3.1196 -1.8911 34 1 1.5193 -1.7767 1.9610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292338518.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:37 Heat of formation + Delta-G solvation = -13.227405 kcal Electronic energy + Delta-G solvation = -20673.922045 eV Core-core repulsion = 17189.045204 eV Total energy + Delta-G solvation = -3484.876841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.48084 -42.17452 -40.62001 -37.83615 -37.13835 -35.63542 -34.07585 -33.37077 -32.31346 -28.69029 -28.03522 -27.14336 -25.22523 -24.69525 -23.22094 -20.95528 -20.57147 -20.04555 -18.98282 -18.87010 -18.33639 -18.14374 -17.42269 -16.68483 -16.47103 -16.27903 -15.48151 -15.40429 -14.81012 -14.67860 -14.33144 -14.13230 -13.86485 -13.42441 -13.14991 -12.90230 -12.86055 -12.62015 -12.45095 -12.40830 -11.93826 -11.67554 -11.63249 -11.51023 -11.31134 -11.16152 -10.82024 -10.57706 -9.95534 -8.18632 -6.31854 -1.57497 -0.39982 -0.08765 -0.05713 1.40384 1.43933 1.44188 1.55832 1.58314 2.02475 2.42708 2.77058 3.07129 3.15878 3.29702 3.46071 3.77813 3.96567 4.11866 4.30449 4.43308 4.48048 4.50495 4.67267 4.74997 4.89249 5.02837 5.07173 5.38624 5.51398 5.61591 5.83567 5.84668 5.97406 6.16210 6.46033 6.86159 6.98474 7.39044 8.93958 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041387 B = 0.003088 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.382023 B = 9063.984390 C = 9386.670724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.576 5.576 3 C 0.519 3.481 4 O -0.568 6.568 5 C -0.111 4.111 6 C 0.039 3.961 7 C -0.538 4.538 8 H 0.080 0.920 9 C -0.007 4.007 10 N -0.938 5.938 11 Si 0.969 3.031 12 H -0.250 1.250 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.149 3.851 16 C -0.065 4.065 17 C -0.067 4.067 18 C 0.138 3.862 19 N 0.030 4.970 20 O -0.139 6.139 21 O -0.165 6.165 22 N -0.442 5.442 23 C 0.126 3.874 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.113 0.887 29 H -0.019 1.019 30 H -0.015 1.015 31 H 0.262 0.738 32 H 0.173 0.827 33 H 0.192 0.808 34 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 -16.495 -2.552 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.308 5.308 3 C 0.312 3.688 4 O -0.444 6.444 5 C -0.150 4.150 6 C 0.001 3.999 7 C -0.576 4.576 8 H 0.098 0.902 9 C -0.204 4.204 10 N -0.578 5.578 11 Si 0.794 3.206 12 H -0.173 1.173 13 H -0.211 1.211 14 H -0.209 1.209 15 C 0.054 3.946 16 C -0.092 4.092 17 C -0.090 4.090 18 C -0.077 4.077 19 N 0.550 4.450 20 O -0.357 6.357 21 O -0.379 6.379 22 N -0.155 5.155 23 C -0.037 4.037 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.000 1.000 30 H 0.003 0.997 31 H 0.070 0.930 32 H 0.190 0.810 33 H 0.209 0.791 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -9.904 -16.313 -1.909 19.180 hybrid contribution 0.623 1.040 -0.499 1.311 sum -9.281 -15.274 -2.408 18.034 Atomic orbital electron populations 1.22405 0.73820 1.05925 1.05157 1.45800 1.09284 1.01516 1.74194 1.21776 0.87650 0.85959 0.73461 1.90728 1.16877 1.87540 1.49276 1.21703 0.99320 0.88438 1.05585 1.18742 0.93784 0.92482 0.94884 1.21737 0.94506 0.91493 1.49853 0.90169 1.26095 0.95620 1.03841 0.94869 1.70171 1.08507 1.27661 1.51494 0.85333 0.79541 0.78408 0.77335 1.17276 1.21074 1.20932 1.19200 0.93810 0.87844 0.93722 1.22113 0.93728 0.94194 0.99198 1.21920 0.97301 0.92211 0.97528 1.21626 1.02219 0.88385 0.95490 1.43578 0.99354 1.01967 1.00080 1.94520 1.36696 1.75655 1.28848 1.94583 1.67959 1.52675 1.22680 1.66402 1.05317 1.17328 1.26436 1.23336 0.95851 0.86644 0.97871 0.89225 0.88203 0.88535 0.86533 0.86853 1.00035 0.99685 0.92977 0.81002 0.79108 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.11 127.77 1.29 1.95 16 2 N -0.58 -11.62 2.95 -654.19 -1.93 -13.55 16 3 C 0.52 16.32 7.56 87.66 0.66 16.98 16 4 O -0.57 -23.94 15.55 -3.07 -0.05 -23.99 16 5 C -0.11 -3.65 4.32 29.85 0.13 -3.52 16 6 C 0.04 1.95 4.26 29.85 0.13 2.07 16 7 C -0.54 -28.15 9.11 25.60 0.23 -27.92 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.72 16 9 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 10 N -0.94 -57.05 13.29 21.45 0.28 -56.77 16 11 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 12 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 15 C 0.15 3.01 4.84 38.24 0.19 3.20 16 16 C -0.06 -1.25 9.47 22.58 0.21 -1.04 16 17 C -0.07 -1.27 9.59 22.34 0.21 -1.06 16 18 C 0.14 3.35 7.77 129.65 1.01 4.36 16 19 N 0.03 0.82 4.45 -49.87 -0.22 0.60 16 20 O -0.14 -3.61 18.42 18.89 0.35 -3.26 16 21 O -0.17 -5.03 19.02 18.88 0.36 -4.67 16 22 N -0.44 -10.74 10.03 -185.96 -1.87 -12.61 16 23 C 0.13 2.42 11.01 84.84 0.93 3.35 16 24 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.10 0.90 6.48 -2.39 -0.02 0.89 16 26 H 0.10 0.56 8.05 -2.39 -0.02 0.54 16 27 H 0.12 3.13 7.24 -2.39 -0.02 3.11 16 28 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 29 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 30 H -0.02 -0.88 8.10 -2.38 -0.02 -0.90 16 31 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.19 2.62 7.60 -2.91 -0.02 2.60 16 34 H 0.21 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -77.08 312.09 5.54 -71.54 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: 1.13 Total: 0.26 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.46 Total: -1.53 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -3.73 Total: -82.33 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: 0.66 Total: -31.92 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -77.08 5.54 -71.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292338518.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.310 kcal (2) G-P(sol) polarization free energy of solvation -77.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds