Wall clock time and date at job start Tue Mar 31 2020 00:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99200 * 2 1 4 4 N 1.46500 * 109.47114 * 124.99905 * 3 2 1 5 5 C 1.46497 * 120.00262 * 262.15932 * 4 3 2 6 6 C 1.50701 * 109.46959 * 270.00430 * 5 4 3 7 7 H 1.07996 * 120.00613 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99984 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99457 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00099 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47143 * 90.00100 * 10 8 6 12 12 H 1.48500 * 109.47152 * 209.99779 * 10 8 6 13 13 H 1.48496 * 109.47480 * 329.99993 * 10 8 6 14 14 C 1.34781 * 119.99936 * 82.15886 * 4 3 2 15 15 O 1.21694 * 119.99630 * 181.22821 * 14 4 3 16 16 C 1.46681 * 120.00148 * 1.23110 * 14 4 3 17 17 C 1.37868 * 126.23253 * 170.75378 * 16 14 4 18 18 C 1.39834 * 107.08213 * 180.26847 * 17 16 14 19 19 C 1.35455 * 107.86914 * 359.76287 * 18 17 16 20 20 N 1.48019 * 125.56748 * 179.97438 * 19 18 17 21 21 O 1.21797 * 120.00316 * 180.02562 * 20 19 18 22 22 O 1.21807 * 119.99919 * 0.04222 * 20 19 18 23 23 N 1.35536 * 108.86704 * 359.97438 * 19 18 17 24 24 H 0.96993 * 125.67517 * 179.97438 * 23 19 18 25 25 H 1.07996 * 120.00202 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99278 * 180.02562 * 1 2 3 27 27 H 1.07988 * 120.00539 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47699 * 4.99600 * 3 2 1 29 29 H 1.09011 * 109.46847 * 244.99516 * 3 2 1 30 30 H 1.09002 * 109.46730 * 29.99876 * 5 4 3 31 31 H 1.08993 * 109.47506 * 150.00037 * 5 4 3 32 32 H 0.97006 * 119.99667 * 180.02562 * 9 8 6 33 33 H 1.08000 * 126.46163 * 0.02562 * 17 16 14 34 34 H 1.08007 * 126.06498 * 179.72122 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1314 5 6 2.6200 2.0181 2.3708 6 6 3.0596 3.4578 2.3002 7 1 3.5670 3.8251 1.4204 8 6 2.8141 4.3064 3.3589 9 7 2.1958 3.8593 4.4301 10 14 3.3596 6.0907 3.2717 11 1 2.2719 6.9127 2.6831 12 1 3.6666 6.5819 4.6391 13 1 4.5741 6.1963 2.4237 14 6 4.1932 0.7258 1.0321 15 8 4.9568 0.7290 1.9797 16 6 4.5784 0.0621 -0.2180 17 6 5.8262 -0.4375 -0.5244 18 6 5.7482 -0.9756 -1.8127 19 6 4.4808 -0.8039 -2.2588 20 7 3.9679 -1.2303 -3.5802 21 8 2.8051 -1.0238 -3.8778 22 8 4.7088 -1.7881 -4.3699 23 7 3.7588 -0.1780 -1.2976 24 1 2.8220 0.0648 -1.3617 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9354 0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3585 2.1317 0.0895 29 1 2.6213 1.4027 -0.9315 30 1 1.5384 1.9744 2.4983 31 1 3.1056 1.5310 3.2163 32 1 2.0228 4.4563 5.1748 33 1 6.7004 -0.4139 0.1093 34 1 6.5555 -1.4443 -2.3560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292468866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:42 Heat of formation + Delta-G solvation = 42.785336 kcal Electronic energy + Delta-G solvation = -21623.801234 eV Core-core repulsion = 18141.353288 eV Total energy + Delta-G solvation = -3482.447947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.78535 -42.63938 -40.39095 -37.91394 -37.73926 -35.33433 -33.97120 -32.79415 -31.97627 -29.75590 -27.88248 -27.10132 -25.26997 -23.00371 -22.56492 -22.07056 -21.00009 -20.23176 -19.64204 -18.88798 -18.73727 -18.49603 -17.37662 -16.82320 -16.40020 -16.18146 -15.85560 -15.41819 -14.79706 -14.48700 -14.38094 -14.28049 -14.10983 -13.43843 -13.27362 -12.98018 -12.90111 -12.63673 -12.56913 -12.48461 -12.44028 -12.29216 -11.78661 -11.26566 -10.78816 -10.68169 -10.55332 -10.22379 -9.73254 -8.27882 -6.42559 -1.22686 -0.20072 0.19966 0.95183 1.17634 1.36767 1.39288 1.49215 1.62775 1.91592 2.12548 2.36816 3.02824 3.15259 3.54779 3.60439 3.71023 3.85353 3.93690 4.23072 4.49904 4.64957 4.72817 4.81292 4.87265 4.96770 5.12124 5.24409 5.32116 5.43497 5.56032 5.63332 5.69241 5.95832 6.33036 6.38618 6.64177 6.94768 7.28643 8.79738 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004791 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.977086 B = 5842.823568 C = 6316.082172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.237 4.237 3 C 0.116 3.884 4 N -0.586 5.586 5 C 0.263 3.737 6 C -0.549 4.549 7 H 0.055 0.945 8 C 0.015 3.985 9 N -0.923 5.923 10 Si 0.966 3.034 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.568 3.432 15 O -0.555 6.555 16 C 0.035 3.965 17 C -0.115 4.115 18 C -0.069 4.069 19 C 0.048 3.952 20 N 0.060 4.940 21 O -0.201 6.201 22 O -0.126 6.126 23 N -0.516 5.516 24 H 0.442 0.558 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.032 0.968 31 H 0.010 0.990 32 H 0.269 0.731 33 H 0.188 0.812 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 -8.942 -13.580 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.256 4.256 3 C -0.007 4.007 4 N -0.316 5.316 5 C 0.143 3.857 6 C -0.587 4.587 7 H 0.073 0.927 8 C -0.185 4.185 9 N -0.562 5.562 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.198 1.198 14 C 0.355 3.645 15 O -0.433 6.433 16 C -0.085 4.085 17 C -0.141 4.141 18 C -0.097 4.097 19 C -0.149 4.149 20 N 0.576 4.424 21 O -0.405 6.405 22 O -0.347 6.347 23 N -0.129 5.129 24 H 0.295 0.705 25 H 0.133 0.867 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.078 0.922 33 H 0.205 0.795 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.164 -8.585 -12.303 15.047 hybrid contribution -0.562 0.938 0.061 1.095 sum 0.602 -7.648 -12.242 14.447 Atomic orbital electron populations 1.24301 0.94841 1.04213 0.92373 1.23296 0.97852 0.97178 1.07280 1.21188 0.93189 0.98108 0.88204 1.48211 1.15025 1.51643 1.16678 1.18917 0.95311 0.90844 0.80650 1.21639 1.38895 0.95428 1.02766 0.92715 1.25774 0.94767 1.03440 0.94513 1.70033 1.41953 1.37652 1.06600 0.85438 0.78837 0.79106 0.77592 1.18996 1.20609 1.19788 1.17333 0.82181 0.79085 0.85879 1.90841 1.51896 1.61792 1.38781 1.21014 0.92808 1.06515 0.88118 1.21784 0.96366 0.99727 0.96231 1.21291 0.93541 0.99960 0.94896 1.21121 0.93984 1.14929 0.84844 1.42638 1.00455 0.98350 1.00942 1.94594 1.01935 1.61501 1.82426 1.94557 1.55744 1.40249 1.44106 1.43380 1.14377 1.44126 1.11028 0.70477 0.86656 0.85569 0.87431 0.87429 0.89839 0.94953 0.97223 0.92225 0.79463 0.77565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 14.32 67.77 0.97 -1.43 16 2 C -0.24 -5.84 7.88 25.64 0.20 -5.63 16 3 C 0.12 3.44 5.41 85.63 0.46 3.91 16 4 N -0.59 -23.52 2.46 -835.22 -2.06 -25.58 16 5 C 0.26 13.29 5.13 85.63 0.44 13.73 16 6 C -0.55 -29.91 9.39 25.60 0.24 -29.67 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 8 C 0.02 0.83 5.46 84.66 0.46 1.29 16 9 N -0.92 -53.20 13.29 21.45 0.28 -52.92 16 10 Si 0.97 42.96 29.54 68.60 2.03 44.98 16 11 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 C 0.57 22.70 7.57 86.45 0.65 23.35 16 15 O -0.55 -26.76 16.47 -4.33 -0.07 -26.83 16 16 C 0.04 1.05 6.62 40.35 0.27 1.32 16 17 C -0.12 -2.73 10.67 22.57 0.24 -2.49 16 18 C -0.07 -1.33 10.46 22.01 0.23 -1.10 16 19 C 0.05 1.14 8.06 127.91 1.03 2.17 16 20 N 0.06 1.52 4.45 -49.52 -0.22 1.30 16 21 O -0.20 -5.47 19.24 18.89 0.36 -5.11 16 22 O -0.13 -3.07 19.00 18.88 0.36 -2.71 16 23 N -0.52 -13.16 4.37 -174.46 -0.76 -13.92 16 24 H 0.44 10.66 3.54 -92.71 -0.33 10.33 16 25 H 0.12 2.14 7.84 -2.91 -0.02 2.12 16 26 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 27 H 0.11 2.65 7.31 -2.92 -0.02 2.63 16 28 H 0.11 3.18 7.66 -2.39 -0.02 3.17 16 29 H 0.08 2.21 5.18 -2.38 -0.01 2.19 16 30 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 31 H 0.01 0.56 7.40 -2.39 -0.02 0.54 16 32 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 33 H 0.19 3.91 8.06 -2.91 -0.02 3.88 16 34 H 0.21 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -66.99 308.41 5.94 -61.05 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.82 Total: 14.31 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.20 Total: 5.43 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -2.76 Total: -91.12 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: 0.65 Total: -34.65 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -66.99 5.94 -61.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292468866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.833 kcal (2) G-P(sol) polarization free energy of solvation -66.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds