Wall clock time and date at job start Tue Mar 31 2020 00:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38805 * 110.99595 * 236.04605 * 2 1 3 5 5 C 1.38963 * 120.18144 * 59.72961 * 4 2 1 6 6 C 1.37947 * 120.06613 * 179.71430 * 5 4 2 7 7 C 1.38660 * 120.44662 * 0.56175 * 6 5 4 8 8 N 1.48013 * 119.81395 * 179.69698 * 7 6 5 9 9 O 1.31700 * 119.99764 * 180.02562 * 8 7 6 10 10 O 1.31695 * 120.00293 * 0.02562 * 8 7 6 11 11 C 1.37692 * 120.36670 * 359.71528 * 7 6 5 12 12 C 1.39839 * 119.92413 * 0.02562 * 11 7 6 13 13 C 1.47247 * 120.22548 * 179.97438 * 12 11 7 14 14 O 1.21528 * 120.00707 * 180.02562 * 13 12 11 15 15 N 1.34781 * 119.99626 * 0.02562 * 13 12 11 16 16 C 1.33298 * 119.99880 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00206 * 0.02562 * 16 15 13 18 18 C 1.46792 * 119.99815 * 179.97438 * 16 15 13 19 19 N 1.29308 * 120.00206 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99927 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47271 * 90.00171 * 20 18 16 22 22 H 1.48503 * 109.47472 * 210.00074 * 20 18 16 23 23 H 1.48502 * 109.47289 * 330.00187 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 28 28 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 29 29 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 30 30 H 1.07999 * 119.96249 * 359.97438 * 5 4 2 31 31 H 1.08004 * 119.77484 * 180.25688 * 6 5 4 32 32 H 1.08003 * 120.03837 * 180.02562 * 11 7 6 33 33 H 0.96994 * 120.00188 * 359.97438 * 15 13 12 34 34 H 0.96999 * 120.00242 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9664 -0.7238 -1.0749 5 6 1.6513 -0.3487 -2.3754 6 6 2.1517 -1.0662 -3.4420 7 6 2.9612 -2.1713 -3.2276 8 7 3.4850 -2.9350 -4.3823 9 8 4.2538 -3.9856 -4.1828 10 8 3.1823 -2.5641 -5.6091 11 6 3.2802 -2.5625 -1.9465 12 6 2.7858 -1.8431 -0.8540 13 6 3.1223 -2.2558 0.5188 14 8 2.6901 -1.6280 1.4654 15 7 3.9097 -3.3300 0.7256 16 6 4.2139 -3.7040 1.9684 17 1 3.8291 -3.1465 2.8096 18 6 5.0711 -4.8742 2.1936 19 7 5.5306 -5.5425 1.1865 20 14 5.4980 -5.3978 3.9351 21 1 4.4791 -6.3600 4.4265 22 1 6.8346 -6.0448 3.9439 23 1 5.5195 -4.2051 4.8195 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.5899 1.9163 0.8525 28 1 3.0829 1.3431 0.0709 29 1 1.7045 1.8723 -0.9233 30 1 1.0176 0.5079 -2.5511 31 1 1.9072 -0.7680 -4.4509 32 1 3.9116 -3.4239 -1.7856 33 1 4.2544 -3.8313 -0.0298 34 1 6.0967 -6.3160 1.3353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299528752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:40 Heat of formation + Delta-G solvation = 45.037525 kcal Electronic energy + Delta-G solvation = -21530.594502 eV Core-core repulsion = 18048.244218 eV Total energy + Delta-G solvation = -3482.350284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.48388 -38.69957 -37.81306 -36.30115 -34.21390 -34.14421 -32.06114 -31.13014 -30.67435 -27.51771 -26.56791 -25.36228 -23.81190 -23.31637 -21.05032 -19.93733 -18.70662 -17.95890 -17.81265 -16.70537 -15.99685 -15.78514 -15.47694 -14.98680 -14.92802 -14.45258 -14.11122 -13.62753 -13.52206 -13.29957 -12.64181 -12.55797 -12.13423 -12.09150 -11.88395 -11.64842 -11.61308 -11.32625 -11.13121 -10.92784 -10.65923 -10.48454 -10.40023 -9.82384 -9.27573 -8.92702 -8.63031 -8.48857 -7.94810 -6.96656 -3.79405 -0.50225 0.85536 1.22871 1.34363 2.91364 3.05915 3.09835 3.16226 3.86098 3.86583 4.17457 4.44590 4.51793 4.75718 4.93330 5.04911 5.15354 5.23536 5.28012 5.40021 5.53833 5.58297 5.63551 5.79401 5.88870 5.95572 5.97983 6.06795 6.34311 6.47913 6.89890 6.98311 7.01764 7.41051 7.72869 8.20465 8.92391 9.22906 9.98999 10.18356 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.006336 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.979175 B = 4417.872717 C = 6264.130141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.482 5.482 3 C 0.036 3.964 4 C 0.173 3.827 5 C -0.153 4.153 6 C -0.068 4.068 7 C -0.005 4.005 8 N -0.013 5.013 9 O -0.169 6.169 10 O -0.189 6.189 11 C -0.047 4.047 12 C -0.066 4.066 13 C 0.428 3.572 14 O -0.564 6.564 15 N -0.513 5.513 16 C -0.311 4.311 17 H 0.119 0.881 18 C 0.031 3.969 19 N -0.834 5.834 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.261 1.261 24 H 0.070 0.930 25 H 0.024 0.976 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.023 0.977 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.388 0.612 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 8.280 -4.762 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.201 5.201 3 C -0.110 4.110 4 C 0.075 3.925 5 C -0.174 4.174 6 C -0.089 4.089 7 C -0.091 4.091 8 N 0.465 4.535 9 O -0.364 6.364 10 O -0.380 6.380 11 C -0.069 4.069 12 C -0.073 4.073 13 C 0.219 3.781 14 O -0.449 6.449 15 N -0.144 5.144 16 C -0.442 4.442 17 H 0.137 0.863 18 C -0.183 4.183 19 N -0.467 5.467 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.185 1.185 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.222 0.778 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.257 8.599 -3.144 11.090 hybrid contribution 0.401 -0.576 -0.968 1.195 sum -5.856 8.023 -4.112 10.750 Atomic orbital electron populations 1.22435 0.85623 1.02916 1.00264 1.59113 1.07809 1.13493 1.39707 1.22406 1.01529 0.86844 1.00202 1.19026 0.92487 0.92382 0.88653 1.21604 1.02417 1.01349 0.92048 1.20731 0.94758 0.92253 1.01173 1.20216 1.06842 0.98023 0.84055 1.50526 0.98328 1.00864 1.03783 1.96305 1.32812 1.13833 1.93487 1.96222 1.64220 1.73585 1.03974 1.21348 0.96993 0.99559 0.88987 1.20472 0.97586 0.94601 0.94640 1.16919 0.88347 0.85864 0.86937 1.90662 1.57604 1.55712 1.40939 1.41127 1.40105 1.24063 1.09082 1.20885 1.27453 1.09931 0.85923 0.86324 1.27060 0.95560 0.95453 1.00199 1.68639 1.27906 1.16734 1.33383 0.85696 0.78016 0.79371 0.80503 1.19639 1.20358 1.18459 0.91090 0.95776 0.90594 0.90603 0.91041 0.95818 0.84117 0.83421 0.82559 0.77797 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.33 60.07 0.56 1.00 16 2 N -0.48 -7.71 2.92 -186.61 -0.55 -8.25 16 3 C 0.04 0.47 9.38 60.06 0.56 1.04 16 4 C 0.17 2.81 4.72 -83.60 -0.39 2.41 16 5 C -0.15 -1.97 8.55 -39.42 -0.34 -2.31 16 6 C -0.07 -0.92 9.56 -39.53 -0.38 -1.29 16 7 C -0.01 -0.08 6.88 -79.99 -0.55 -0.63 16 8 N -0.01 -0.23 4.98 33.94 0.17 -0.06 16 9 O -0.17 -3.31 19.13 -31.57 -0.60 -3.91 16 10 O -0.19 -3.35 19.13 -31.57 -0.60 -3.96 16 11 C -0.05 -0.83 9.06 -39.18 -0.35 -1.19 16 12 C -0.07 -1.26 5.89 -104.80 -0.62 -1.88 16 13 C 0.43 9.98 7.69 -12.60 -0.10 9.89 16 14 O -0.56 -14.61 14.55 5.34 0.08 -14.54 16 15 N -0.51 -12.42 5.12 -10.74 -0.06 -12.47 16 16 C -0.31 -7.99 9.92 -13.46 -0.13 -8.12 16 17 H 0.12 3.20 7.19 -52.49 -0.38 2.82 16 18 C 0.03 0.75 5.69 -15.16 -0.09 0.66 16 19 N -0.83 -20.37 13.09 56.00 0.73 -19.64 16 20 Si 0.94 18.73 29.64 -169.99 -5.04 13.69 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.02 0.25 7.09 -51.93 -0.37 -0.12 16 26 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 27 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.02 0.25 7.34 -51.93 -0.38 -0.13 16 30 H 0.14 1.39 7.00 -52.49 -0.37 1.02 16 31 H 0.15 1.69 7.56 -52.48 -0.40 1.29 16 32 H 0.16 2.85 5.90 -52.48 -0.31 2.54 16 33 H 0.39 8.99 6.01 -40.82 -0.25 8.74 16 34 H 0.29 6.52 8.26 -40.82 -0.34 6.19 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -28.99 305.44 -6.36 -35.35 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.27 Total: 9.61 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.82 Total: -0.43 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.30 Total: -40.42 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.13 Total: -22.40 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.04 Total: 13.69 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.99 -6.36 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299528752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.384 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds