Wall clock time and date at job start Tue Mar 31 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38805 * 110.99595 * 236.04605 * 2 1 3 5 5 C 1.38963 * 120.18144 * 59.72961 * 4 2 1 6 6 C 1.37947 * 120.06613 * 179.71430 * 5 4 2 7 7 C 1.38660 * 120.44662 * 0.56175 * 6 5 4 8 8 N 1.48013 * 119.81395 * 179.69698 * 7 6 5 9 9 O 1.31700 * 119.99764 * 180.02562 * 8 7 6 10 10 O 1.31695 * 120.00293 * 0.02562 * 8 7 6 11 11 C 1.37692 * 120.36670 * 359.71528 * 7 6 5 12 12 C 1.39839 * 119.92413 * 0.02562 * 11 7 6 13 13 C 1.47247 * 120.22548 * 179.97438 * 12 11 7 14 14 O 1.21528 * 120.00707 * 180.02562 * 13 12 11 15 15 N 1.34781 * 119.99626 * 0.02562 * 13 12 11 16 16 C 1.33298 * 119.99880 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00206 * 0.02562 * 16 15 13 18 18 C 1.46792 * 119.99815 * 179.97438 * 16 15 13 19 19 N 1.29308 * 120.00206 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99927 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47271 * 90.00171 * 20 18 16 22 22 H 1.48503 * 109.47472 * 210.00074 * 20 18 16 23 23 H 1.48502 * 109.47289 * 330.00187 * 20 18 16 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 28 28 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 29 29 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 30 30 H 1.07999 * 119.96249 * 359.97438 * 5 4 2 31 31 H 1.08004 * 119.77484 * 180.25688 * 6 5 4 32 32 H 1.08003 * 120.03837 * 180.02562 * 11 7 6 33 33 H 0.96994 * 120.00188 * 359.97438 * 15 13 12 34 34 H 0.96999 * 120.00242 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9664 -0.7238 -1.0749 5 6 1.6513 -0.3487 -2.3754 6 6 2.1517 -1.0662 -3.4420 7 6 2.9612 -2.1713 -3.2276 8 7 3.4850 -2.9350 -4.3823 9 8 4.2538 -3.9856 -4.1828 10 8 3.1823 -2.5641 -5.6091 11 6 3.2802 -2.5625 -1.9465 12 6 2.7858 -1.8431 -0.8540 13 6 3.1223 -2.2558 0.5188 14 8 2.6901 -1.6280 1.4654 15 7 3.9097 -3.3300 0.7256 16 6 4.2139 -3.7040 1.9684 17 1 3.8291 -3.1465 2.8096 18 6 5.0711 -4.8742 2.1936 19 7 5.5306 -5.5425 1.1865 20 14 5.4980 -5.3978 3.9351 21 1 4.4791 -6.3600 4.4265 22 1 6.8346 -6.0448 3.9439 23 1 5.5195 -4.2051 4.8195 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 1.5899 1.9163 0.8525 28 1 3.0829 1.3431 0.0709 29 1 1.7045 1.8723 -0.9233 30 1 1.0176 0.5079 -2.5511 31 1 1.9072 -0.7680 -4.4509 32 1 3.9116 -3.4239 -1.7856 33 1 4.2544 -3.8313 -0.0298 34 1 6.0967 -6.3160 1.3353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299528752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:39 Heat of formation + Delta-G solvation = 26.289385 kcal Electronic energy + Delta-G solvation = -21531.407482 eV Core-core repulsion = 18048.244218 eV Total energy + Delta-G solvation = -3483.163265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.88184 -40.17240 -39.44771 -37.60556 -35.96972 -35.64381 -33.83175 -32.59591 -31.98541 -28.51735 -27.90141 -27.08541 -25.02302 -24.82272 -22.38201 -21.51653 -20.46038 -19.49803 -19.22535 -17.94944 -17.58736 -17.19313 -16.84715 -16.64706 -16.17920 -15.79132 -15.67674 -15.23201 -14.91275 -14.34548 -14.32829 -13.81834 -13.77079 -13.23096 -13.15550 -12.95450 -12.83477 -12.66354 -12.58889 -12.39387 -12.33303 -12.08582 -11.94681 -11.57954 -10.53304 -10.39161 -10.35900 -10.32016 -9.21146 -8.71447 -5.76939 -1.90682 -0.46982 -0.10067 -0.03804 1.34379 1.40290 1.52324 1.76017 2.22995 2.46422 2.69153 2.93999 3.21451 3.26460 3.36095 3.70169 3.76340 4.00580 4.21311 4.36185 4.40334 4.44004 4.49236 4.57030 4.61118 4.65940 4.91023 4.98834 5.01469 5.12326 5.16987 5.53737 5.81665 5.98722 6.24976 6.40869 7.08839 7.44240 8.15486 8.43951 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.006336 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.979175 B = 4417.872717 C = 6264.130141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.527 5.527 3 C 0.037 3.963 4 C 0.196 3.804 5 C -0.136 4.136 6 C -0.020 4.020 7 C -0.022 4.022 8 N -0.010 5.010 9 O -0.243 6.243 10 O -0.141 6.141 11 C -0.041 4.041 12 C -0.099 4.099 13 C 0.437 3.563 14 O -0.591 6.591 15 N -0.532 5.532 16 C -0.373 4.373 17 H 0.091 0.909 18 C 0.001 3.999 19 N -0.871 5.871 20 Si 1.002 2.998 21 H -0.266 1.266 22 H -0.265 1.265 23 H -0.267 1.267 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.195 0.805 31 H 0.191 0.809 32 H 0.138 0.862 33 H 0.387 0.613 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 11.376 -7.403 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.248 5.248 3 C -0.108 4.108 4 C 0.099 3.901 5 C -0.157 4.157 6 C -0.040 4.040 7 C -0.109 4.109 8 N 0.465 4.535 9 O -0.419 6.419 10 O -0.348 6.348 11 C -0.063 4.063 12 C -0.104 4.104 13 C 0.227 3.773 14 O -0.478 6.478 15 N -0.164 5.164 16 C -0.503 4.503 17 H 0.109 0.891 18 C -0.209 4.209 19 N -0.505 5.505 20 Si 0.823 3.177 21 H -0.191 1.191 22 H -0.190 1.190 23 H -0.191 1.191 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.212 0.788 31 H 0.208 0.792 32 H 0.156 0.844 33 H 0.221 0.779 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.519 11.590 -5.716 15.478 hybrid contribution 0.754 -1.040 -0.557 1.400 sum -7.765 10.549 -6.273 14.523 Atomic orbital electron populations 1.22487 0.83372 1.02395 1.02854 1.58990 1.09990 1.15400 1.40446 1.22446 1.00166 0.85409 1.02783 1.19332 0.89709 0.90362 0.90719 1.22063 1.01858 1.02169 0.89565 1.21365 0.90270 0.88937 1.03452 1.20359 1.08271 0.99254 0.82983 1.50664 0.98060 1.00785 1.03955 1.96354 1.36110 1.15836 1.93591 1.96177 1.61906 1.72256 1.04424 1.21119 0.96484 0.98904 0.89817 1.20239 1.00537 0.97106 0.92563 1.17631 0.86475 0.84642 0.88510 1.90609 1.58015 1.56343 1.42828 1.41012 1.41762 1.25024 1.08616 1.20610 1.31491 1.12356 0.85851 0.89091 1.27768 0.94731 0.94716 1.03705 1.68683 1.29334 1.17599 1.34868 0.84813 0.78219 0.78605 0.76014 1.19091 1.18989 1.19079 0.93049 0.91795 0.89516 0.89502 0.93262 0.91870 0.78754 0.79212 0.84389 0.77853 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.33 127.69 1.19 1.93 16 2 N -0.53 -15.37 2.92 -744.30 -2.17 -17.55 16 3 C 0.04 0.82 9.38 127.69 1.20 2.02 16 4 C 0.20 5.76 4.72 38.76 0.18 5.94 16 5 C -0.14 -2.59 8.55 22.37 0.19 -2.40 16 6 C -0.02 -0.41 9.56 22.30 0.21 -0.20 16 7 C -0.02 -0.66 6.88 36.35 0.25 -0.41 16 8 N -0.01 -0.34 4.98 -46.53 -0.23 -0.57 16 9 O -0.24 -9.76 19.13 3.51 0.07 -9.69 16 10 O -0.14 -4.38 19.13 3.52 0.07 -4.31 16 11 C -0.04 -1.48 9.06 22.53 0.20 -1.28 16 12 C -0.10 -3.76 5.89 -19.98 -0.12 -3.87 16 13 C 0.44 21.50 7.69 86.61 0.67 22.17 16 14 O -0.59 -32.14 14.55 -3.80 -0.06 -32.20 16 15 N -0.53 -27.95 5.12 -306.19 -1.57 -29.52 16 16 C -0.37 -20.90 9.92 86.71 0.86 -20.04 16 17 H 0.09 5.41 7.19 -2.91 -0.02 5.39 16 18 C 0.00 0.04 5.69 87.30 0.50 0.53 16 19 N -0.87 -45.50 13.09 23.26 0.30 -45.20 16 20 Si 1.00 40.70 29.64 68.60 2.03 42.73 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 0.88 7.09 -2.39 -0.02 0.86 16 26 H 0.09 1.69 8.12 -2.38 -0.02 1.67 16 27 H 0.09 1.73 8.12 -2.38 -0.02 1.71 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 0.90 7.34 -2.39 -0.02 0.89 16 30 H 0.20 1.88 7.00 -2.91 -0.02 1.86 16 31 H 0.19 2.59 7.56 -2.91 -0.02 2.57 16 32 H 0.14 5.45 5.90 -2.91 -0.02 5.43 16 33 H 0.39 19.77 6.01 -92.71 -0.56 19.21 16 34 H 0.29 14.04 8.26 -92.71 -0.77 13.27 16 Total: -1.00 -70.17 305.44 4.39 -65.78 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.61 Total: 26.12 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 5.34 Total: 4.40 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -3.67 Total: -92.84 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: 0.08 Total: -46.20 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -70.17 4.39 -65.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299528752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.070 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds