Wall clock time and date at job start Tue Mar 31 2020 00:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38343 * 120.75010 * 2 1 4 4 C 1.39099 * 119.10027 * 180.28860 * 3 2 1 5 5 N 1.39002 * 119.71035 * 179.70405 * 4 3 2 6 6 C 1.47484 * 110.99741 * 275.95593 * 5 4 3 7 7 C 1.53514 * 87.92982 * 221.29188 * 6 5 4 8 8 O 1.42907 * 114.17092 * 272.37746 * 7 6 5 9 9 C 1.50693 * 114.17061 * 139.67059 * 7 6 5 10 10 H 1.08003 * 120.00097 * 266.16292 * 9 7 6 11 11 C 1.37879 * 120.00245 * 86.16348 * 9 7 6 12 12 N 1.31517 * 119.99642 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00363 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47508 * 89.99561 * 13 11 9 15 15 H 1.48507 * 109.47244 * 209.99812 * 13 11 9 16 16 H 1.48499 * 109.46944 * 329.99177 * 13 11 9 17 17 C 1.47474 * 111.00300 * 179.97438 * 5 4 3 18 18 N 1.32431 * 120.58606 * 359.68630 * 4 3 2 19 19 C 1.31936 * 121.62338 * 0.02562 * 18 4 3 20 20 C 1.38066 * 120.85773 * 359.97438 * 19 18 4 21 21 N 1.48003 * 120.33831 * 180.02562 * 20 19 18 22 22 O 1.21804 * 120.00308 * 143.32472 * 21 20 19 23 23 O 1.21800 * 119.99790 * 323.04173 * 21 20 19 24 24 H 1.08999 * 109.47202 * 264.66902 * 1 2 3 25 25 H 1.09006 * 109.46618 * 24.65840 * 1 2 3 26 26 H 1.08991 * 109.47329 * 144.65776 * 1 2 3 27 27 H 1.08004 * 120.45054 * 359.97438 * 3 2 1 28 28 H 1.08995 * 113.48121 * 336.06108 * 6 5 4 29 29 H 1.09001 * 113.47665 * 106.52963 * 6 5 4 30 30 H 0.96694 * 113.99693 * 273.84252 * 8 7 6 31 31 H 0.96997 * 120.00006 * 180.02562 * 12 11 9 32 32 H 1.09002 * 113.47318 * 253.47071 * 17 5 4 33 33 H 1.08999 * 113.47578 * 23.93387 * 17 5 4 34 34 H 1.08005 * 119.57114 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2143 1.1889 0.0000 4 6 3.6047 1.1489 -0.0061 5 7 4.3281 2.3358 -0.0124 6 6 4.4750 2.8579 -1.3839 7 6 5.9272 3.2117 -1.0341 8 8 6.0891 4.5033 -0.4443 9 6 6.9139 2.9304 -2.1378 10 1 7.4431 1.9893 -2.1622 11 6 7.1410 3.8745 -3.1167 12 7 6.4962 5.0204 -3.0873 13 14 8.3635 3.5256 -4.4853 14 1 7.6621 2.8771 -5.6221 15 1 8.9727 4.8007 -4.9419 16 1 9.4278 2.6218 -3.9797 17 6 5.7788 2.0707 -0.0176 18 7 4.2455 -0.0101 -0.0056 19 6 3.5970 -1.1591 0.0001 20 6 2.2168 -1.1932 0.0064 21 7 1.5011 -2.4887 0.0133 22 8 0.4689 -2.6108 0.6483 23 8 1.9415 -3.4312 -0.6201 24 1 -0.3633 -0.0955 1.0232 25 1 -0.3633 0.9340 -0.4288 26 1 -0.3633 -0.8382 -0.5944 27 1 1.6940 2.1354 -0.0004 28 1 4.3882 2.0900 -2.1526 29 1 3.8523 3.7295 -1.5858 30 1 6.1823 5.2200 -1.0866 31 1 6.6557 5.6844 -3.7761 32 1 6.2609 2.2752 0.9383 33 1 6.0400 1.0926 -0.4215 34 1 4.1531 -2.0850 0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302391758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:30 Heat of formation + Delta-G solvation = 34.356670 kcal Electronic energy + Delta-G solvation = -21537.953087 eV Core-core repulsion = 18055.139646 eV Total energy + Delta-G solvation = -3482.813441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32206 -41.07916 -38.93586 -36.62359 -34.94517 -34.08927 -32.27163 -31.76380 -28.98700 -27.76818 -26.19558 -25.28178 -24.43057 -23.22226 -21.46403 -19.27907 -19.06392 -18.61221 -17.86967 -17.84309 -16.54407 -16.34448 -15.34970 -15.07993 -14.89928 -14.47018 -13.92511 -13.87418 -13.39978 -13.22040 -12.92773 -12.73046 -12.24423 -11.89115 -11.62528 -11.60857 -11.28731 -11.16004 -11.11687 -10.99938 -10.57904 -10.38337 -10.13246 -10.00034 -9.73727 -9.54167 -8.86464 -8.62761 -8.23496 -6.46262 -4.56132 -0.11243 0.78173 1.08598 1.34853 3.09995 3.18447 3.19339 3.22530 3.78718 4.04715 4.05343 4.13847 4.40551 4.70310 4.78690 4.93010 5.20336 5.24259 5.33319 5.37201 5.64045 5.70137 5.73138 5.81482 6.00878 6.04191 6.32314 6.48162 6.49446 6.63884 7.09154 7.47062 7.54888 7.57621 7.60290 7.75558 8.47653 9.15018 9.43557 10.60384 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.004301 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.997595 B = 6508.746351 C = 6937.906730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.031 3.969 3 C -0.173 4.173 4 C 0.341 3.659 5 N -0.433 5.433 6 C -0.003 4.003 7 C 0.251 3.749 8 O -0.568 6.568 9 C -0.535 4.535 10 H 0.072 0.928 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.908 3.092 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.013 3.987 18 N -0.503 5.503 19 C 0.202 3.798 20 C -0.136 4.136 21 N 0.040 4.960 22 O -0.160 6.160 23 O -0.163 6.163 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.393 0.607 31 H 0.274 0.726 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.785 -6.958 3.572 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.022 3.978 3 C -0.196 4.196 4 C 0.111 3.889 5 N -0.151 5.151 6 C -0.128 4.128 7 C 0.209 3.791 8 O -0.380 6.380 9 C -0.573 4.573 10 H 0.090 0.910 11 C -0.130 4.130 12 N -0.538 5.538 13 Si 0.735 3.265 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.114 4.114 18 N -0.217 5.217 19 C 0.040 3.960 20 C -0.223 4.223 21 N 0.559 4.441 22 O -0.376 6.376 23 O -0.378 6.378 24 H 0.116 0.884 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.176 0.824 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.249 0.751 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.886 -5.986 4.525 10.885 hybrid contribution -0.292 -0.686 -1.698 1.855 sum -8.178 -6.672 2.827 10.926 Atomic orbital electron populations 1.21027 0.88135 1.04118 1.04704 1.20022 0.97980 0.89984 0.89797 1.21606 0.93241 0.98445 1.06314 1.21416 0.91717 0.90694 0.85035 1.66542 1.09682 1.13850 1.24990 1.25028 1.04083 0.99263 0.84458 1.19388 0.88760 0.82080 0.88879 1.86056 1.95062 1.17588 1.39317 1.21513 1.24382 1.03083 1.08318 0.91005 1.25088 0.95449 0.94561 0.97936 1.69267 1.41818 1.07058 1.35662 0.86324 0.80963 0.78081 0.81172 1.20319 1.20751 1.19415 1.24251 0.84461 1.00920 1.01776 1.68212 1.38761 0.97371 1.17371 1.22559 0.88032 0.97772 0.87679 1.21904 0.94111 0.83636 1.22697 1.43363 1.00253 1.02322 0.98155 1.94509 1.12318 1.89647 1.41141 1.94551 1.70333 1.31620 1.41340 0.88355 0.89794 0.90496 0.82401 0.91081 0.89815 0.75058 0.91540 0.90249 0.87983 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.74 36.00 0.31 -0.90 16 2 C 0.03 0.39 5.90 -104.36 -0.62 -0.22 16 3 C -0.17 -2.44 9.68 -39.22 -0.38 -2.82 16 4 C 0.34 5.80 5.85 -155.01 -0.91 4.89 16 5 N -0.43 -8.42 6.41 -182.61 -1.17 -9.59 16 6 C 0.00 -0.07 7.07 -7.52 -0.05 -0.12 16 7 C 0.25 5.91 1.57 -91.24 -0.14 5.77 16 8 O -0.57 -14.27 13.54 -35.23 -0.48 -14.75 16 9 C -0.53 -13.39 8.69 -34.44 -0.30 -13.69 16 10 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 11 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 12 N -0.90 -22.52 11.02 55.43 0.61 -21.91 16 13 Si 0.91 19.39 29.54 -169.99 -5.02 14.37 16 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 17 C 0.01 0.28 6.80 -7.52 -0.05 0.23 16 18 N -0.50 -8.32 8.20 -12.44 -0.10 -8.42 16 19 C 0.20 2.85 10.81 -17.57 -0.19 2.66 16 20 C -0.14 -1.90 6.51 -79.80 -0.52 -2.42 16 21 N 0.04 0.56 4.18 34.04 0.14 0.71 16 22 O -0.16 -2.27 16.91 -29.46 -0.50 -2.77 16 23 O -0.16 -2.43 18.95 -29.46 -0.56 -2.99 16 24 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 26 H 0.08 0.79 7.02 -51.93 -0.36 0.42 16 27 H 0.16 1.94 8.06 -52.48 -0.42 1.51 16 28 H 0.07 1.49 7.85 -51.93 -0.41 1.08 16 29 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.39 10.04 6.34 45.56 0.29 10.33 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 33 H 0.10 2.08 6.62 -51.93 -0.34 1.74 16 34 H 0.18 2.04 8.00 -52.48 -0.42 1.62 16 LS Contribution 299.58 15.07 4.51 4.51 Total: -1.00 -26.29 299.58 -8.40 -34.70 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -2.90 Total: 11.06 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.94 Total: -4.92 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -0.52 Total: -39.22 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.53 Total: -20.50 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.29 -8.40 -34.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302391758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.053 kcal (2) G-P(sol) polarization free energy of solvation -26.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds