Wall clock time and date at job start Tue Mar 31 2020 00:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38343 * 120.75010 * 2 1 4 4 C 1.39099 * 119.10027 * 180.28860 * 3 2 1 5 5 N 1.39002 * 119.71035 * 179.70405 * 4 3 2 6 6 C 1.47484 * 110.99741 * 275.95593 * 5 4 3 7 7 C 1.53514 * 87.92982 * 221.29188 * 6 5 4 8 8 O 1.42907 * 114.17092 * 272.37746 * 7 6 5 9 9 C 1.50693 * 114.17061 * 139.67059 * 7 6 5 10 10 H 1.08003 * 120.00097 * 266.16292 * 9 7 6 11 11 C 1.37879 * 120.00245 * 86.16348 * 9 7 6 12 12 N 1.31517 * 119.99642 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00363 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47508 * 89.99561 * 13 11 9 15 15 H 1.48507 * 109.47244 * 209.99812 * 13 11 9 16 16 H 1.48499 * 109.46944 * 329.99177 * 13 11 9 17 17 C 1.47474 * 111.00300 * 179.97438 * 5 4 3 18 18 N 1.32431 * 120.58606 * 359.68630 * 4 3 2 19 19 C 1.31936 * 121.62338 * 0.02562 * 18 4 3 20 20 C 1.38066 * 120.85773 * 359.97438 * 19 18 4 21 21 N 1.48003 * 120.33831 * 180.02562 * 20 19 18 22 22 O 1.21804 * 120.00308 * 143.32472 * 21 20 19 23 23 O 1.21800 * 119.99790 * 323.04173 * 21 20 19 24 24 H 1.08999 * 109.47202 * 264.66902 * 1 2 3 25 25 H 1.09006 * 109.46618 * 24.65840 * 1 2 3 26 26 H 1.08991 * 109.47329 * 144.65776 * 1 2 3 27 27 H 1.08004 * 120.45054 * 359.97438 * 3 2 1 28 28 H 1.08995 * 113.48121 * 336.06108 * 6 5 4 29 29 H 1.09001 * 113.47665 * 106.52963 * 6 5 4 30 30 H 0.96694 * 113.99693 * 273.84252 * 8 7 6 31 31 H 0.96997 * 120.00006 * 180.02562 * 12 11 9 32 32 H 1.09002 * 113.47318 * 253.47071 * 17 5 4 33 33 H 1.08999 * 113.47578 * 23.93387 * 17 5 4 34 34 H 1.08005 * 119.57114 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2143 1.1889 0.0000 4 6 3.6047 1.1489 -0.0061 5 7 4.3281 2.3358 -0.0124 6 6 4.4750 2.8579 -1.3839 7 6 5.9272 3.2117 -1.0341 8 8 6.0891 4.5033 -0.4443 9 6 6.9139 2.9304 -2.1378 10 1 7.4431 1.9893 -2.1622 11 6 7.1410 3.8745 -3.1167 12 7 6.4962 5.0204 -3.0873 13 14 8.3635 3.5256 -4.4853 14 1 7.6621 2.8771 -5.6221 15 1 8.9727 4.8007 -4.9419 16 1 9.4278 2.6218 -3.9797 17 6 5.7788 2.0707 -0.0176 18 7 4.2455 -0.0101 -0.0056 19 6 3.5970 -1.1591 0.0001 20 6 2.2168 -1.1932 0.0064 21 7 1.5011 -2.4887 0.0133 22 8 0.4689 -2.6108 0.6483 23 8 1.9415 -3.4312 -0.6201 24 1 -0.3633 -0.0955 1.0232 25 1 -0.3633 0.9340 -0.4288 26 1 -0.3633 -0.8382 -0.5944 27 1 1.6940 2.1354 -0.0004 28 1 4.3882 2.0900 -2.1526 29 1 3.8523 3.7295 -1.5858 30 1 6.1823 5.2200 -1.0866 31 1 6.6557 5.6844 -3.7761 32 1 6.2609 2.2752 0.9383 33 1 6.0400 1.0926 -0.4215 34 1 4.1531 -2.0850 0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302391758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:29 Heat of formation + Delta-G solvation = 17.099769 kcal Electronic energy + Delta-G solvation = -21538.701402 eV Core-core repulsion = 18055.139646 eV Total energy + Delta-G solvation = -3483.561756 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.47050 -42.42245 -40.36934 -37.76463 -36.59434 -35.29017 -34.16685 -33.07938 -30.22799 -29.09415 -27.63878 -26.86595 -25.94030 -24.34843 -22.74599 -20.79627 -20.30751 -19.87259 -19.57266 -19.00220 -17.86814 -17.74980 -17.14348 -16.59231 -16.20921 -15.90028 -15.32107 -15.08050 -14.76110 -14.39033 -14.13575 -14.02107 -13.58149 -13.42047 -13.41549 -12.86155 -12.75755 -12.68683 -12.41289 -12.28829 -12.23848 -12.22735 -11.50405 -11.26925 -11.10496 -10.95956 -10.72245 -10.30484 -9.84528 -8.32551 -6.49352 -1.28145 -0.30760 -0.08845 0.20301 1.40897 1.44756 1.54042 1.99603 2.33507 2.52749 2.86510 2.94407 3.02873 3.29633 3.42027 3.82785 3.94095 4.03814 4.09673 4.22684 4.27320 4.44244 4.50073 4.62041 4.74813 4.84808 4.89053 4.93626 4.94995 5.22912 5.28058 5.68561 5.87504 5.96860 6.33559 6.44498 6.56144 7.24245 7.47686 8.73315 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.004301 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.997595 B = 6508.746351 C = 6937.906730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.041 3.959 3 C -0.166 4.166 4 C 0.314 3.686 5 N -0.432 5.432 6 C 0.011 3.989 7 C 0.226 3.774 8 O -0.579 6.579 9 C -0.557 4.557 10 H 0.066 0.934 11 C 0.034 3.966 12 N -0.915 5.915 13 Si 0.966 3.034 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.270 1.270 17 C 0.023 3.977 18 N -0.522 5.522 19 C 0.199 3.801 20 C -0.136 4.136 21 N 0.041 4.959 22 O -0.144 6.144 23 O -0.181 6.181 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.178 0.822 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.388 0.612 31 H 0.277 0.723 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.169 -7.782 3.488 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.032 3.968 3 C -0.189 4.189 4 C 0.086 3.914 5 N -0.150 5.150 6 C -0.115 4.115 7 C 0.184 3.816 8 O -0.391 6.391 9 C -0.595 4.595 10 H 0.085 0.915 11 C -0.167 4.167 12 N -0.556 5.556 13 Si 0.791 3.209 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.195 1.195 17 C -0.105 4.105 18 N -0.236 5.236 19 C 0.037 3.963 20 C -0.223 4.223 21 N 0.560 4.440 22 O -0.365 6.365 23 O -0.392 6.392 24 H 0.133 0.867 25 H 0.126 0.874 26 H 0.093 0.907 27 H 0.195 0.805 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.243 0.757 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.252 -6.852 4.428 12.335 hybrid contribution 0.017 -0.524 -1.601 1.685 sum -9.235 -7.376 2.827 12.152 Atomic orbital electron populations 1.21174 0.85548 1.05396 1.05816 1.20372 0.99648 0.88938 0.87795 1.21754 0.91973 0.99773 1.05359 1.21408 0.92716 0.90022 0.87279 1.66472 1.08812 1.15648 1.24070 1.24637 1.02256 0.98986 0.85582 1.19666 0.90154 0.81972 0.89765 1.86037 1.95328 1.18199 1.39532 1.21737 1.25312 1.03204 1.09277 0.91537 1.25749 0.96829 0.94412 0.99722 1.69327 1.42531 1.07504 1.36228 0.85424 0.78937 0.77878 0.78656 1.19943 1.20346 1.19469 1.24062 0.85831 0.99877 1.00714 1.68106 1.39674 0.97894 1.17965 1.22829 0.88534 0.97688 0.87267 1.22047 0.94232 0.83916 1.22102 1.43377 1.00229 1.02309 0.98070 1.94500 1.12026 1.89560 1.40437 1.94568 1.70702 1.31853 1.42092 0.86747 0.87415 0.90669 0.80491 0.91544 0.90245 0.75691 0.91272 0.90717 0.87864 0.78776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.74 71.24 0.62 -1.33 16 2 C 0.04 0.94 5.90 -19.70 -0.12 0.82 16 3 C -0.17 -4.31 9.68 22.50 0.22 -4.09 16 4 C 0.31 10.39 5.85 133.05 0.78 11.17 16 5 N -0.43 -16.72 6.41 -732.05 -4.70 -21.42 16 6 C 0.01 0.48 7.07 83.59 0.59 1.07 16 7 C 0.23 10.83 1.57 -11.19 -0.02 10.81 16 8 O -0.58 -29.73 13.54 -148.98 -2.02 -31.75 16 9 C -0.56 -28.30 8.69 25.60 0.22 -28.08 16 10 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 11 C 0.03 1.66 5.40 84.65 0.46 2.12 16 12 N -0.92 -46.24 11.02 21.45 0.24 -46.00 16 13 Si 0.97 39.69 29.54 68.60 2.03 41.72 16 14 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 15 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 C 0.02 0.97 6.80 83.60 0.57 1.54 16 18 N -0.52 -16.86 8.20 -193.26 -1.59 -18.44 16 19 C 0.20 5.33 10.81 84.64 0.91 6.24 16 20 C -0.14 -3.49 6.51 36.48 0.24 -3.25 16 21 N 0.04 1.07 4.18 -46.23 -0.19 0.87 16 22 O -0.14 -3.68 16.91 18.88 0.32 -3.36 16 23 O -0.18 -5.11 18.95 18.89 0.36 -4.75 16 24 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.11 1.25 8.07 -2.38 -0.02 1.23 16 26 H 0.07 1.28 7.02 -2.39 -0.02 1.26 16 27 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 28 H 0.07 2.82 7.85 -2.39 -0.02 2.80 16 29 H 0.08 3.37 8.14 -2.39 -0.02 3.36 16 30 H 0.39 20.31 6.34 -74.06 -0.47 19.84 16 31 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.10 4.27 6.62 -2.39 -0.02 4.26 16 34 H 0.20 4.25 8.00 -2.91 -0.02 4.23 16 Total: -1.00 -55.62 299.58 -0.39 -56.01 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.68 Total: 30.10 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 4.48 Total: -2.99 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -6.24 Total: -84.99 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -1.34 Total: -39.85 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -55.62 -0.39 -56.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302391758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.114 kcal (2) G-P(sol) polarization free energy of solvation -55.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds