Wall clock time and date at job start Tue Mar 31 2020 00:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47446 * 2 1 4 4 C 1.36038 * 119.26073 * 270.02218 * 3 2 1 5 5 C 1.38026 * 119.30764 * 179.97438 * 4 3 2 6 6 C 1.43199 * 120.94460 * 180.02562 * 5 4 3 7 7 N 5.90089 * 105.80779 * 323.32155 * 2 1 3 8 8 C 1.47185 * 118.10111 * 359.76995 * 5 4 3 9 9 O 1.21683 * 120.72441 * 180.24163 * 8 5 4 10 10 N 1.34964 * 118.54734 * 0.47026 * 8 5 4 11 11 C 1.46499 * 119.77440 * 179.79873 * 10 8 5 12 12 C 1.53004 * 109.47198 * 269.72257 * 11 10 8 13 13 H 1.08994 * 109.47074 * 60.00190 * 12 11 10 14 14 O 1.42898 * 109.47002 * 299.99990 * 12 11 10 15 15 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 16 16 H 1.08002 * 119.99770 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00083 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00147 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00278 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47228 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46793 * 300.00001 * 19 17 15 22 22 H 1.48500 * 109.47000 * 60.00094 * 19 17 15 23 23 C 1.34233 * 119.26319 * 89.99737 * 3 2 1 24 24 O 1.21557 * 118.94430 * 0.02562 * 23 3 2 25 25 H 1.09003 * 109.47096 * 60.00006 * 1 2 3 26 26 H 1.08999 * 109.47603 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47038 * 300.00423 * 1 2 3 28 28 H 1.09003 * 109.47038 * 239.99577 * 2 1 3 29 29 H 1.08996 * 109.46889 * 120.00305 * 2 1 3 30 30 H 1.08001 * 120.34595 * 359.95594 * 4 3 2 31 31 H 1.09000 * 109.47602 * 149.72204 * 11 10 8 32 32 H 1.08998 * 109.47492 * 29.72193 * 11 10 8 33 33 H 0.96698 * 113.99738 * 300.00043 * 14 12 11 34 34 H 0.97005 * 119.99661 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2396 2.0082 -1.1868 5 6 2.6993 3.3097 -1.1879 6 6 2.9435 4.0033 -2.4167 7 7 3.1375 4.5535 -3.3914 8 6 2.9258 3.9661 0.1098 9 8 3.3263 5.1138 0.1645 10 7 2.6841 3.2655 1.2378 11 6 2.9047 3.8911 2.5440 12 6 4.3417 3.6285 2.9991 13 1 5.0358 4.0504 2.2724 14 8 4.5586 2.2198 3.1029 15 6 4.5688 4.2725 4.3425 16 1 3.7682 4.8145 4.8238 17 6 5.7987 4.1698 4.9572 18 7 6.7738 3.5102 4.3709 19 14 6.0801 4.9674 6.6227 20 1 7.4747 4.7126 7.0643 21 1 5.8540 6.4312 6.5150 22 1 5.1349 4.3921 7.6131 23 6 2.2371 1.9998 1.1710 24 8 2.0240 1.3959 2.2042 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.0578 1.4929 -2.1184 31 1 2.2106 3.4692 3.2709 32 1 2.7393 4.9655 2.4650 33 1 3.9741 1.7774 3.7335 34 1 6.6276 3.0956 3.5062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330719816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:12 Heat of formation + Delta-G solvation = -59.029246 kcal Electronic energy + Delta-G solvation = -22074.308901 eV Core-core repulsion = 18587.445942 eV Total energy + Delta-G solvation = -3486.862958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.29380 -39.08773 -37.87679 -36.38666 -36.07006 -34.93359 -32.84443 -32.11836 -30.39287 -29.06312 -25.67425 -24.58315 -24.14403 -23.00327 -21.37099 -19.51265 -19.37628 -17.51003 -17.37217 -16.87534 -16.19499 -15.77680 -15.06779 -14.74656 -14.37172 -14.30812 -14.14455 -13.81980 -13.79174 -13.62897 -13.18189 -13.04294 -12.74860 -12.61771 -12.48876 -11.98319 -11.64993 -11.52501 -11.13289 -10.76108 -10.72232 -10.39727 -10.15769 -10.09169 -10.00344 -9.01797 -8.73073 -8.48708 -8.07718 -6.38128 -4.22301 0.45555 1.75344 1.92672 2.34802 2.96260 3.24785 3.43483 3.45176 3.63716 3.64687 3.71042 3.91926 4.45909 4.49027 4.51599 4.63955 4.93228 5.12488 5.22196 5.32810 5.38159 5.62298 5.70473 5.72369 5.80435 5.90430 6.09673 6.16574 6.47522 7.17247 7.40739 7.49424 7.63044 7.85831 8.00585 8.30319 8.81809 9.08132 9.63607 11.02204 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.005632 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.125047 B = 4970.522374 C = 5930.714418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.524 5.524 4 C 0.241 3.759 5 C -0.212 4.212 6 C 0.292 3.708 7 N -0.418 5.418 8 C 0.563 3.437 9 O -0.492 6.492 10 N -0.535 5.535 11 C 0.088 3.912 12 C 0.206 3.794 13 H 0.055 0.945 14 O -0.578 6.578 15 C -0.648 4.648 16 H 0.053 0.947 17 C 0.037 3.963 18 N -0.889 5.889 19 Si 1.069 2.931 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.696 3.304 24 O -0.517 6.517 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.188 0.812 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.359 0.641 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -9.648 -10.376 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.240 5.240 4 C 0.108 3.892 5 C -0.226 4.226 6 C -0.024 4.024 7 N -0.095 5.095 8 C 0.353 3.647 9 O -0.364 6.364 10 N -0.277 5.277 11 C -0.031 4.031 12 C 0.148 3.852 13 H 0.073 0.927 14 O -0.384 6.384 15 C -0.686 4.686 16 H 0.071 0.929 17 C -0.172 4.172 18 N -0.523 5.523 19 Si 0.897 3.103 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 C 0.399 3.601 24 O -0.388 6.388 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.204 0.796 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.205 0.795 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.872 -8.211 -10.328 17.749 hybrid contribution -1.657 -0.413 -0.502 1.780 sum -13.529 -8.624 -10.830 19.357 Atomic orbital electron populations 1.22190 0.93984 1.03581 1.03230 1.22051 0.95771 0.78061 1.06060 1.44842 1.58948 1.15974 1.04251 1.22638 0.85161 0.90735 0.90649 1.17232 1.21989 0.94544 0.88870 1.24169 0.93175 0.93548 0.91471 1.81240 1.10065 1.06885 1.11317 1.17918 0.77705 0.86219 0.82853 1.90906 1.42635 1.16388 1.86488 1.46461 1.58563 1.11838 1.10873 1.22990 1.03011 0.98580 0.78548 1.19829 0.88359 0.80184 0.96866 0.92746 1.86437 1.63806 1.22625 1.65492 1.22244 1.01144 1.40078 1.05143 0.92858 1.25805 0.92029 0.95280 1.04113 1.70637 1.34033 1.29791 1.17791 0.83564 0.76239 0.75885 0.74608 1.20730 1.21324 1.21325 1.15705 0.78764 0.81961 0.83628 1.90981 1.54011 1.63063 1.30706 0.92000 0.90156 0.91353 0.88260 0.87125 0.79554 0.88837 0.88387 0.79455 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.23 37.16 0.38 -0.51 16 2 C 0.10 0.63 6.00 -4.04 -0.02 0.60 16 3 N -0.52 -5.18 2.58 -121.05 -0.31 -5.50 16 4 C 0.24 1.94 10.14 -15.76 -0.16 1.78 16 5 C -0.21 -2.69 5.92 -104.42 -0.62 -3.31 16 6 C 0.29 4.07 15.12 -22.47 -0.34 3.73 16 7 N -0.42 -6.56 18.54 41.84 0.78 -5.78 16 8 C 0.56 9.89 7.63 -12.54 -0.10 9.79 16 9 O -0.49 -10.54 16.34 5.20 0.09 -10.45 16 10 N -0.54 -9.48 2.51 -122.19 -0.31 -9.79 16 11 C 0.09 1.82 4.79 -4.04 -0.02 1.80 16 12 C 0.21 5.19 2.70 -27.88 -0.08 5.12 16 13 H 0.05 1.55 8.01 -51.93 -0.42 1.13 16 14 O -0.58 -14.46 10.80 -45.85 -0.50 -14.96 16 15 C -0.65 -17.92 8.76 -34.44 -0.30 -18.23 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.04 1.06 5.40 -17.82 -0.10 0.96 16 18 N -0.89 -27.26 13.53 55.43 0.75 -26.51 16 19 Si 1.07 24.99 29.90 -169.99 -5.08 19.91 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.70 10.55 7.61 -87.74 -0.67 9.89 16 24 O -0.52 -8.87 13.85 -5.31 -0.07 -8.94 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.25 8.01 -51.93 -0.42 -0.16 16 29 H 0.11 0.88 7.31 -51.93 -0.38 0.50 16 30 H 0.19 0.48 8.05 -52.49 -0.42 0.05 16 31 H 0.09 1.86 7.35 -51.93 -0.38 1.48 16 32 H 0.10 2.05 7.43 -51.93 -0.39 1.66 16 33 H 0.36 8.50 8.38 45.56 0.38 8.88 16 34 H 0.28 8.89 6.47 -40.82 -0.26 8.62 16 LS Contribution 306.85 15.07 4.62 4.62 Total: -1.00 -36.21 306.85 -4.81 -41.01 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -2.75 Total: 4.75 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: -2.02 Total: 11.63 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.91 Total: -47.57 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.48 Total: -34.35 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.21 -4.81 -41.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330719816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.015 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds