Wall clock time and date at job start Tue Mar 31 2020 00:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47446 * 2 1 4 4 C 1.36038 * 119.26073 * 270.02218 * 3 2 1 5 5 C 1.38026 * 119.30764 * 179.97438 * 4 3 2 6 6 C 1.43199 * 120.94460 * 180.02562 * 5 4 3 7 7 N 5.90089 * 105.80779 * 323.32155 * 2 1 3 8 8 C 1.47185 * 118.10111 * 359.76995 * 5 4 3 9 9 O 1.21683 * 120.72441 * 180.24163 * 8 5 4 10 10 N 1.34964 * 118.54734 * 0.47026 * 8 5 4 11 11 C 1.46499 * 119.77440 * 179.79873 * 10 8 5 12 12 C 1.53004 * 109.47198 * 269.72257 * 11 10 8 13 13 H 1.08994 * 109.47074 * 60.00190 * 12 11 10 14 14 O 1.42898 * 109.47002 * 299.99990 * 12 11 10 15 15 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 16 16 H 1.08002 * 119.99770 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00083 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00147 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00278 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47228 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46793 * 300.00001 * 19 17 15 22 22 H 1.48500 * 109.47000 * 60.00094 * 19 17 15 23 23 C 1.34233 * 119.26319 * 89.99737 * 3 2 1 24 24 O 1.21557 * 118.94430 * 0.02562 * 23 3 2 25 25 H 1.09003 * 109.47096 * 60.00006 * 1 2 3 26 26 H 1.08999 * 109.47603 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47038 * 300.00423 * 1 2 3 28 28 H 1.09003 * 109.47038 * 239.99577 * 2 1 3 29 29 H 1.08996 * 109.46889 * 120.00305 * 2 1 3 30 30 H 1.08001 * 120.34595 * 359.95594 * 4 3 2 31 31 H 1.09000 * 109.47602 * 149.72204 * 11 10 8 32 32 H 1.08998 * 109.47492 * 29.72193 * 11 10 8 33 33 H 0.96698 * 113.99738 * 300.00043 * 14 12 11 34 34 H 0.97005 * 119.99661 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2396 2.0082 -1.1868 5 6 2.6993 3.3097 -1.1879 6 6 2.9435 4.0033 -2.4167 7 7 3.1375 4.5535 -3.3914 8 6 2.9258 3.9661 0.1098 9 8 3.3263 5.1138 0.1645 10 7 2.6841 3.2655 1.2378 11 6 2.9047 3.8911 2.5440 12 6 4.3417 3.6285 2.9991 13 1 5.0358 4.0504 2.2724 14 8 4.5586 2.2198 3.1029 15 6 4.5688 4.2725 4.3425 16 1 3.7682 4.8145 4.8238 17 6 5.7987 4.1698 4.9572 18 7 6.7738 3.5102 4.3709 19 14 6.0801 4.9674 6.6227 20 1 7.4747 4.7126 7.0643 21 1 5.8540 6.4312 6.5150 22 1 5.1349 4.3921 7.6131 23 6 2.2371 1.9998 1.1710 24 8 2.0240 1.3959 2.2042 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.0578 1.4929 -2.1184 31 1 2.2106 3.4692 3.2709 32 1 2.7393 4.9655 2.4650 33 1 3.9741 1.7774 3.7335 34 1 6.6276 3.0956 3.5062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330719816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:12 Heat of formation + Delta-G solvation = -86.333537 kcal Electronic energy + Delta-G solvation = -22075.492903 eV Core-core repulsion = 18587.445942 eV Total energy + Delta-G solvation = -3488.046961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.48350 -40.37595 -39.15440 -37.85267 -37.48186 -36.37852 -34.31092 -33.77086 -31.24173 -30.76647 -27.30241 -25.62567 -25.50751 -24.22010 -23.06581 -20.74780 -20.39179 -19.52631 -18.53581 -18.18450 -17.44892 -17.14288 -16.31261 -16.18688 -15.80902 -15.65315 -15.60764 -15.23515 -15.03069 -14.82473 -14.49011 -14.26273 -14.06201 -14.03735 -13.78121 -13.05293 -12.88807 -12.58488 -12.39363 -12.31663 -12.04481 -11.96833 -11.93034 -11.85981 -11.55157 -10.87012 -10.66665 -10.10488 -9.73707 -8.67166 -6.52342 -0.41895 0.64400 0.69567 1.23348 1.53654 1.61845 1.78783 1.81107 2.11056 2.50696 2.55986 2.69227 3.12967 3.20947 3.66508 3.81216 3.95674 4.03035 4.16685 4.17737 4.21797 4.28205 4.55100 4.69015 4.72261 4.82454 5.11630 5.16134 5.31788 5.37049 5.73343 6.00485 6.06532 6.36372 6.44528 6.48252 6.69283 7.05963 7.43738 8.70812 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.005632 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.125047 B = 4970.522374 C = 5930.714418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.093 3.907 3 N -0.511 5.511 4 C 0.305 3.695 5 C -0.246 4.246 6 C 0.314 3.686 7 N -0.457 5.457 8 C 0.552 3.448 9 O -0.550 6.550 10 N -0.545 5.545 11 C 0.106 3.894 12 C 0.210 3.790 13 H 0.012 0.988 14 O -0.581 6.581 15 C -0.659 4.659 16 H 0.060 0.940 17 C -0.016 4.016 18 N -0.917 5.917 19 Si 1.119 2.881 20 H -0.285 1.285 21 H -0.271 1.271 22 H -0.264 1.264 23 C 0.691 3.309 24 O -0.539 6.539 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.035 0.965 28 H 0.156 0.844 29 H 0.091 0.909 30 H 0.264 0.736 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.365 0.635 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 -11.889 -11.426 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.225 5.225 4 C 0.170 3.830 5 C -0.261 4.261 6 C -0.001 4.001 7 N -0.135 5.135 8 C 0.346 3.654 9 O -0.427 6.427 10 N -0.286 5.286 11 C -0.015 4.015 12 C 0.152 3.848 13 H 0.030 0.970 14 O -0.387 6.387 15 C -0.696 4.696 16 H 0.078 0.922 17 C -0.218 4.218 18 N -0.553 5.553 19 Si 0.940 3.060 20 H -0.211 1.211 21 H -0.197 1.197 22 H -0.189 1.189 23 C 0.394 3.606 24 O -0.412 6.412 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.054 0.946 28 H 0.174 0.826 29 H 0.110 0.890 30 H 0.280 0.720 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.212 0.788 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.755 -10.514 -11.409 20.734 hybrid contribution -1.181 0.129 -0.170 1.200 sum -14.936 -10.385 -11.579 21.564 Atomic orbital electron populations 1.22194 0.92908 1.04846 1.02687 1.22569 0.96610 0.75398 1.07964 1.45153 1.57091 1.17101 1.03136 1.23608 0.78973 0.88479 0.91895 1.16819 1.26898 0.96504 0.85835 1.24160 0.91958 0.92818 0.91136 1.81259 1.11954 1.07533 1.12736 1.18717 0.76579 0.85827 0.84232 1.90865 1.45688 1.18862 1.87252 1.46398 1.59136 1.13159 1.09946 1.22381 0.99965 0.98516 0.80685 1.19547 0.90177 0.79938 0.95123 0.96993 1.86384 1.64290 1.22354 1.65683 1.22675 1.01332 1.39622 1.06013 0.92214 1.27390 0.91991 0.94963 1.07433 1.70786 1.34998 1.31981 1.17497 0.82935 0.76396 0.75917 0.70767 1.21086 1.19678 1.18864 1.15951 0.78393 0.80994 0.85253 1.90967 1.54768 1.63246 1.32212 0.89871 0.88031 0.94551 0.82609 0.89049 0.72002 0.88038 0.89317 0.78806 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.23 71.98 0.74 -0.26 16 2 C 0.09 0.69 6.00 86.38 0.52 1.21 16 3 N -0.51 -8.17 2.58 -655.47 -1.69 -9.86 16 4 C 0.30 3.36 10.14 83.99 0.85 4.21 16 5 C -0.25 -5.81 5.92 -19.73 -0.12 -5.93 16 6 C 0.31 8.37 15.12 88.33 1.34 9.70 16 7 N -0.46 -14.04 18.54 19.00 0.35 -13.68 16 8 C 0.55 19.85 7.63 86.56 0.66 20.51 16 9 O -0.55 -25.01 16.34 -4.30 -0.07 -25.08 16 10 N -0.55 -19.61 2.51 -777.09 -1.95 -21.57 16 11 C 0.11 4.54 4.79 86.38 0.41 4.96 16 12 C 0.21 11.09 2.70 29.85 0.08 11.17 16 13 H 0.01 0.74 8.01 -2.39 -0.02 0.73 16 14 O -0.58 -29.97 10.80 -138.82 -1.50 -31.47 16 15 C -0.66 -37.32 8.76 25.60 0.22 -37.09 16 16 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 17 C -0.02 -0.91 5.40 84.65 0.46 -0.45 16 18 N -0.92 -57.93 13.53 21.45 0.29 -57.64 16 19 Si 1.12 50.36 29.90 68.60 2.05 52.41 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 C 0.69 20.15 7.61 179.34 1.36 21.52 16 24 O -0.54 -18.21 13.85 6.26 0.09 -18.12 16 25 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.16 -0.43 8.01 -2.39 -0.02 -0.45 16 29 H 0.09 1.16 7.31 -2.39 -0.02 1.14 16 30 H 0.26 -0.99 8.05 -2.91 -0.02 -1.01 16 31 H 0.10 4.13 7.35 -2.39 -0.02 4.11 16 32 H 0.09 3.93 7.43 -2.39 -0.02 3.91 16 33 H 0.37 17.66 8.38 -74.06 -0.62 17.04 16 34 H 0.26 17.36 6.47 -92.70 -0.60 16.76 16 Total: -1.00 -87.13 306.85 4.80 -82.33 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.71 Total: 13.15 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: 6.53 Total: 29.54 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -3.00 Total: -102.75 kcal Atomic # 8 Polarization: -73.19 SS G_CDS: -1.48 Total: -74.68 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.41 kcal Total: -87.13 4.80 -82.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330719816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.004 kcal (2) G-P(sol) polarization free energy of solvation -87.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds