Wall clock time and date at job start Tue Mar 31 2020 01:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34663 * 116.99831 * 2 1 4 4 O 1.21403 * 119.99910 * 359.97438 * 3 2 1 5 5 C 1.48221 * 119.99820 * 179.97438 * 3 2 1 6 6 C 1.39693 * 120.00506 * 180.02562 * 5 3 2 7 7 N 1.31805 * 119.99364 * 179.97438 * 6 5 3 8 8 C 1.32934 * 120.00641 * 359.97438 * 7 6 5 9 9 C 1.48320 * 120.00013 * 179.97438 * 8 7 6 10 10 O 1.21493 * 120.00246 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99810 * 359.72394 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27205 * 11 9 8 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 C 1.50694 * 109.47460 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99649 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00351 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99771 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47118 * 60.00127 * 18 16 14 20 20 H 1.48498 * 109.47326 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47374 * 300.00233 * 18 16 14 22 22 C 1.39641 * 120.00467 * 0.25756 * 8 7 6 23 23 N 1.31821 * 120.00421 * 359.47136 * 22 8 7 24 24 H 1.08993 * 109.47260 * 299.99797 * 1 2 3 25 25 H 1.08999 * 109.46938 * 60.00356 * 1 2 3 26 26 H 1.09007 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00129 * 359.95378 * 6 5 3 28 28 H 0.97001 * 119.99727 * 0.28102 * 11 9 8 29 29 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 30 30 H 1.08997 * 109.46691 * 60.00285 * 12 11 9 31 31 H 1.08999 * 109.46950 * 300.00755 * 13 12 11 32 32 H 1.09011 * 109.46633 * 59.99954 * 13 12 11 33 33 H 0.97000 * 119.99580 * 180.02562 * 17 16 14 34 34 H 1.08005 * 119.99510 * 179.72625 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4021 2.2180 -0.0005 5 6 3.5435 1.2774 0.0006 6 6 4.1778 2.5221 0.0011 7 7 5.4941 2.5908 0.0021 8 6 6.2180 1.4758 0.0032 9 6 7.6992 1.5533 0.0037 10 8 8.3608 0.5344 0.0042 11 7 8.3111 2.7541 -0.0024 12 6 9.7741 2.8307 -0.0079 13 6 10.2080 4.2979 -0.0136 14 6 11.7129 4.3767 -0.0199 15 1 12.3010 3.4708 -0.0193 16 6 12.3389 5.6051 -0.0252 17 7 11.6227 6.7081 -0.0243 18 14 14.2043 5.7027 -0.0322 19 1 14.7308 5.0265 -1.2450 20 1 14.6255 7.1267 -0.0379 21 1 14.7397 5.0325 1.1799 22 6 5.5840 0.2316 -0.0023 23 7 4.2676 0.1625 0.0021 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.5897 3.4279 0.0004 28 1 7.7828 3.5677 -0.0031 29 1 10.1669 2.3395 0.8823 30 1 10.1605 2.3337 -0.8976 31 1 9.8150 4.7895 -0.9035 32 1 9.8215 4.7946 0.8765 33 1 12.0632 7.5723 -0.0284 34 1 6.1723 -0.6741 -0.0059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342630210.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:17 Heat of formation + Delta-G solvation = -73.164940 kcal Electronic energy + Delta-G solvation = -20075.737708 eV Core-core repulsion = 16588.261780 eV Total energy + Delta-G solvation = -3487.475928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87437 -40.55446 -39.11699 -36.98214 -35.26055 -34.84253 -32.90067 -32.36446 -29.83144 -28.48299 -26.53423 -25.14915 -24.54450 -22.39096 -21.27486 -20.72865 -18.95840 -18.36466 -17.72960 -17.22709 -16.95137 -16.44986 -15.67941 -15.44027 -15.36867 -14.84316 -14.67800 -14.49009 -13.89270 -13.68491 -13.30831 -13.11311 -12.54934 -12.33140 -12.20760 -11.78214 -11.38441 -11.27781 -11.25809 -11.06153 -10.70933 -10.41787 -10.40882 -9.96222 -9.80358 -9.51427 -9.29584 -8.69340 -8.42691 -6.11692 -4.15314 -0.48169 0.54541 1.71924 1.98552 2.70212 3.04702 3.29687 3.33978 3.36929 3.45472 3.46099 3.65153 3.90076 4.32702 4.39093 4.57555 4.67714 4.76991 4.80108 5.10319 5.11348 5.25245 5.67320 5.75989 6.19032 6.23033 6.47583 6.60706 6.69241 6.96668 7.20878 7.45824 7.55986 7.76550 7.85655 8.18466 8.32730 8.90131 9.49679 10.99729 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.046773 B = 0.002683 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.493028 B =10434.782714 C =11007.501780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.333 6.333 3 C 0.531 3.469 4 O -0.488 6.488 5 C 0.049 3.951 6 C 0.120 3.880 7 N -0.410 5.410 8 C 0.077 3.923 9 C 0.559 3.441 10 O -0.530 6.530 11 N -0.691 5.691 12 C 0.118 3.882 13 C 0.012 3.988 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.103 3.897 23 N -0.388 5.388 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.193 0.807 28 H 0.410 0.590 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.897 -11.315 0.046 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.248 6.248 3 C 0.372 3.628 4 O -0.375 6.375 5 C -0.092 4.092 6 C -0.041 4.041 7 N -0.127 5.127 8 C -0.066 4.066 9 C 0.341 3.659 10 O -0.407 6.407 11 N -0.340 5.340 12 C -0.004 4.004 13 C -0.026 4.026 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.060 4.060 23 N -0.105 5.105 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.210 0.790 28 H 0.246 0.754 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -20.617 -11.519 0.050 23.617 hybrid contribution 0.469 0.646 -0.002 0.799 sum -20.148 -10.873 0.047 22.894 Atomic orbital electron populations 1.23415 0.75443 1.04297 1.02875 1.86673 1.23683 1.31302 1.83111 1.20492 0.87138 0.82125 0.73060 1.90885 1.65514 1.36039 1.45040 1.21306 0.92415 0.91908 1.03536 1.23900 0.90566 0.98069 0.91566 1.68668 1.06263 1.30105 1.07625 1.22973 0.97008 0.90962 0.95664 1.17621 0.84384 0.85058 0.78877 1.90804 1.64437 1.34642 1.50812 1.46300 1.10034 1.07547 1.70098 1.21925 0.75171 1.01953 1.01348 1.19339 0.97004 0.88058 0.98152 1.20980 0.90874 0.92604 1.51807 0.92207 1.24999 0.98666 0.95680 0.94921 1.69946 1.35582 0.97579 1.50011 0.86556 0.85131 0.76966 0.78779 1.20096 1.21246 1.20093 1.23979 0.89749 0.99223 0.93040 1.68595 1.06835 1.29498 1.05563 0.91487 0.91478 0.87536 0.79037 0.75444 0.91864 0.91857 0.95733 0.95730 0.92720 0.78724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.33 -3.20 10.39 -40.39 -0.42 -3.62 16 3 C 0.53 5.62 7.96 34.83 0.28 5.90 16 4 O -0.49 -5.66 16.13 -19.19 -0.31 -5.97 16 5 C 0.05 0.54 6.76 -82.74 -0.56 -0.02 16 6 C 0.12 1.27 10.77 -17.02 -0.18 1.08 16 7 N -0.41 -5.12 9.70 -9.29 -0.09 -5.21 16 8 C 0.08 1.02 6.76 -82.72 -0.56 0.46 16 9 C 0.56 9.03 7.82 -12.11 -0.09 8.94 16 10 O -0.53 -9.75 16.34 5.37 0.09 -9.66 16 11 N -0.69 -11.84 5.55 -61.10 -0.34 -12.18 16 12 C 0.12 2.38 5.61 -4.04 -0.02 2.36 16 13 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 14 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.10 1.19 10.77 -17.03 -0.18 1.01 16 23 N -0.39 -4.51 10.27 -9.31 -0.10 -4.61 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.19 1.58 7.64 -52.49 -0.40 1.17 16 28 H 0.41 6.54 7.82 -40.82 -0.32 6.22 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.20 1.95 7.64 -52.48 -0.40 1.55 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -31.45 315.34 -5.13 -36.58 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -3.62 Total: 0.75 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.81 Total: 8.17 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.21 Total: -47.06 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.64 Total: -19.25 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.45 -5.13 -36.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342630210.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.581 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds