Wall clock time and date at job start Tue Mar 31 2020 01:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34663 * 116.99831 * 2 1 4 4 O 1.21403 * 119.99910 * 359.97438 * 3 2 1 5 5 C 1.48221 * 119.99820 * 179.97438 * 3 2 1 6 6 C 1.39693 * 120.00506 * 180.02562 * 5 3 2 7 7 N 1.31805 * 119.99364 * 179.97438 * 6 5 3 8 8 C 1.32934 * 120.00641 * 359.97438 * 7 6 5 9 9 C 1.48320 * 120.00013 * 179.97438 * 8 7 6 10 10 O 1.21493 * 120.00246 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99810 * 359.72394 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27205 * 11 9 8 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 C 1.50694 * 109.47460 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99649 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00351 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99771 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47118 * 60.00127 * 18 16 14 20 20 H 1.48498 * 109.47326 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47374 * 300.00233 * 18 16 14 22 22 C 1.39641 * 120.00467 * 0.25756 * 8 7 6 23 23 N 1.31821 * 120.00421 * 359.47136 * 22 8 7 24 24 H 1.08993 * 109.47260 * 299.99797 * 1 2 3 25 25 H 1.08999 * 109.46938 * 60.00356 * 1 2 3 26 26 H 1.09007 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00129 * 359.95378 * 6 5 3 28 28 H 0.97001 * 119.99727 * 0.28102 * 11 9 8 29 29 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 30 30 H 1.08997 * 109.46691 * 60.00285 * 12 11 9 31 31 H 1.08999 * 109.46950 * 300.00755 * 13 12 11 32 32 H 1.09011 * 109.46633 * 59.99954 * 13 12 11 33 33 H 0.97000 * 119.99580 * 180.02562 * 17 16 14 34 34 H 1.08005 * 119.99510 * 179.72625 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4021 2.2180 -0.0005 5 6 3.5435 1.2774 0.0006 6 6 4.1778 2.5221 0.0011 7 7 5.4941 2.5908 0.0021 8 6 6.2180 1.4758 0.0032 9 6 7.6992 1.5533 0.0037 10 8 8.3608 0.5344 0.0042 11 7 8.3111 2.7541 -0.0024 12 6 9.7741 2.8307 -0.0079 13 6 10.2080 4.2979 -0.0136 14 6 11.7129 4.3767 -0.0199 15 1 12.3010 3.4708 -0.0193 16 6 12.3389 5.6051 -0.0252 17 7 11.6227 6.7081 -0.0243 18 14 14.2043 5.7027 -0.0322 19 1 14.7308 5.0265 -1.2450 20 1 14.6255 7.1267 -0.0379 21 1 14.7397 5.0325 1.1799 22 6 5.5840 0.2316 -0.0023 23 7 4.2676 0.1625 0.0021 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.5897 3.4279 0.0004 28 1 7.7828 3.5677 -0.0031 29 1 10.1669 2.3395 0.8823 30 1 10.1605 2.3337 -0.8976 31 1 9.8150 4.7895 -0.9035 32 1 9.8215 4.7946 0.8765 33 1 12.0632 7.5723 -0.0284 34 1 6.1723 -0.6741 -0.0059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342630210.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:16 Heat of formation + Delta-G solvation = -95.883940 kcal Electronic energy + Delta-G solvation = -20076.722877 eV Core-core repulsion = 16588.261780 eV Total energy + Delta-G solvation = -3488.461098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.81125 -41.41071 -40.40208 -37.74954 -36.75544 -35.95515 -34.79458 -33.35150 -31.58473 -29.20452 -27.61080 -26.51623 -25.77848 -23.48607 -22.82844 -22.02573 -19.86325 -19.44513 -18.76122 -18.48452 -18.01496 -17.71178 -16.86311 -16.76382 -16.50805 -16.25939 -15.88219 -15.82786 -14.94404 -14.82275 -14.38318 -14.27982 -14.27838 -13.26727 -13.12161 -13.06807 -12.92965 -12.72756 -12.54639 -12.24677 -12.20139 -11.88891 -11.82021 -11.57217 -11.34071 -10.90954 -10.59213 -10.56816 -10.12381 -8.22338 -6.33053 -1.43767 -0.35260 0.81062 1.24003 1.43822 1.46015 1.53777 1.59133 1.83760 2.42112 2.42934 2.57806 2.66909 2.95625 3.12662 3.52562 3.63878 3.68364 4.25840 4.30777 4.34893 4.44487 4.49060 4.71526 4.81227 4.85327 5.03646 5.14584 5.45575 5.58006 5.58562 5.78571 6.04099 6.15500 6.38747 6.44213 6.79973 6.95238 7.36327 8.89328 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.046773 B = 0.002683 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.493028 B =10434.782714 C =11007.501780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.534 3.466 4 O -0.500 6.500 5 C 0.055 3.945 6 C 0.125 3.875 7 N -0.419 5.419 8 C 0.065 3.935 9 C 0.566 3.434 10 O -0.553 6.553 11 N -0.693 5.693 12 C 0.137 3.863 13 C 0.020 3.980 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.268 1.268 22 C 0.113 3.887 23 N -0.393 5.393 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.134 0.866 27 H 0.216 0.784 28 H 0.415 0.585 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.265 0.735 34 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.691 -12.181 0.044 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.257 6.257 3 C 0.376 3.624 4 O -0.387 6.387 5 C -0.086 4.086 6 C -0.036 4.036 7 N -0.136 5.136 8 C -0.077 4.077 9 C 0.349 3.651 10 O -0.431 6.431 11 N -0.343 5.343 12 C 0.014 3.986 13 C -0.017 4.017 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.049 4.049 23 N -0.110 5.110 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.152 0.848 27 H 0.232 0.768 28 H 0.252 0.748 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -21.430 -12.412 0.048 24.765 hybrid contribution 0.533 0.877 -0.001 1.027 sum -20.896 -11.535 0.047 23.869 Atomic orbital electron populations 1.23753 0.73313 1.06325 1.03323 1.86658 1.25789 1.30617 1.82614 1.20360 0.86836 0.82356 0.72862 1.90883 1.65670 1.36467 1.45700 1.21531 0.92916 0.91937 1.02203 1.24226 0.89799 0.98880 0.90709 1.68604 1.07213 1.30030 1.07764 1.22477 0.95184 0.91973 0.98093 1.17869 0.85649 0.84037 0.77537 1.90785 1.65512 1.35200 1.51631 1.46100 1.08751 1.08484 1.70925 1.21437 0.77169 0.98985 1.00987 1.19152 0.95871 0.90279 0.96418 1.21437 0.92480 0.92940 1.51517 0.91805 1.25895 1.03624 0.95344 0.94487 1.70063 1.37551 0.98109 1.50971 0.85488 0.79226 0.77087 0.79183 1.19250 1.20895 1.19245 1.24117 0.89793 0.98993 0.92013 1.68659 1.06652 1.29789 1.05872 0.91049 0.91040 0.84817 0.76764 0.74783 0.92230 0.92216 0.97394 0.97395 0.92595 0.77389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.34 -5.91 10.39 -55.72 -0.58 -6.49 16 3 C 0.53 10.38 7.96 70.48 0.56 10.94 16 4 O -0.50 -10.70 16.13 20.15 0.32 -10.37 16 5 C 0.06 1.12 6.76 41.98 0.28 1.41 16 6 C 0.13 2.44 10.77 85.05 0.92 3.35 16 7 N -0.42 -10.03 9.70 -183.29 -1.78 -11.80 16 8 C 0.06 1.66 6.76 42.00 0.28 1.95 16 9 C 0.57 18.09 7.82 86.93 0.68 18.77 16 10 O -0.55 -20.14 16.34 -3.69 -0.06 -20.20 16 11 N -0.69 -23.84 5.55 -465.53 -2.58 -26.42 16 12 C 0.14 5.61 5.61 86.38 0.48 6.09 16 13 C 0.02 1.00 5.09 29.85 0.15 1.15 16 14 C -0.55 -29.77 9.11 25.60 0.23 -29.54 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 16 C 0.01 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 18 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 22 C 0.11 2.47 10.77 85.03 0.92 3.39 16 23 N -0.39 -8.50 10.27 -183.37 -1.88 -10.39 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.22 3.09 7.64 -2.91 -0.02 3.06 16 28 H 0.42 13.35 7.82 -92.71 -0.73 12.63 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.21 3.90 7.64 -2.91 -0.02 3.88 16 Total: -1.00 -66.28 315.34 2.34 -63.94 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.42 Total: 10.86 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.17 Total: 19.71 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -5.96 Total: -102.50 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.31 Total: -37.06 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -66.28 2.34 -63.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342630210.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.944 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds