Wall clock time and date at job start Tue Mar 31 2020 00:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35496 * 117.00337 * 2 1 4 4 C 1.39165 * 119.52796 * 180.02562 * 3 2 1 5 5 C 1.37964 * 119.26527 * 179.97438 * 4 3 2 6 6 C 1.40286 * 118.35458 * 359.97438 * 5 4 3 7 7 C 1.47613 * 120.49520 * 180.02562 * 6 5 4 8 8 O 1.21583 * 120.00144 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99586 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72388 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 O 1.21293 * 120.00086 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00069 * 180.02562 * 11 10 9 14 14 C 1.37097 * 120.00084 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00027 * 359.97438 * 14 13 11 16 16 C 1.38954 * 119.99944 * 179.97438 * 14 13 11 17 17 N 1.31410 * 120.00276 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99680 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46923 * 60.00279 * 18 16 14 20 20 H 1.48504 * 109.46709 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47176 * 300.00026 * 18 16 14 22 22 C 1.39528 * 119.00176 * 0.27547 * 6 5 4 23 23 N 1.31660 * 120.62831 * 359.42840 * 22 6 5 24 24 H 1.08996 * 109.47499 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46846 * 299.99669 * 1 2 3 26 26 H 1.09006 * 109.47262 * 59.99394 * 1 2 3 27 27 H 1.08001 * 120.37020 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.82342 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 30 30 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 32 32 H 0.97002 * 120.00050 * 359.97438 * 13 11 10 33 33 H 0.96997 * 119.99888 * 179.97438 * 17 16 14 34 34 H 1.07998 * 119.68263 * 179.72554 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 3.4344 1.2685 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 3.2525 3.6511 -0.0016 7 6 3.8670 4.9933 -0.0028 8 8 5.0774 5.1077 -0.0037 9 7 3.0861 6.0918 -0.0038 10 6 3.6960 7.4239 0.0012 11 6 2.6132 8.4720 0.0058 12 8 1.4468 8.1392 0.0046 13 7 2.9408 9.7794 0.0103 14 6 1.9558 10.7329 0.0140 15 1 0.9172 10.4365 0.0129 16 6 2.2936 12.0808 0.0192 17 7 3.5572 12.4415 0.0200 18 14 0.9514 13.3800 0.0235 19 1 0.1084 13.2168 1.2351 20 1 1.5696 14.7302 0.0281 21 1 0.1093 13.2258 -1.1900 22 6 1.8646 3.5076 0.0043 23 7 1.3139 2.3118 -0.0010 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 4.0210 0.3617 -0.0005 28 1 5.1324 2.5775 -0.0019 29 1 2.1204 6.0006 -0.0034 30 1 4.3148 7.5369 0.8914 31 1 4.3140 7.5439 -0.8886 32 1 3.8736 10.0456 0.0109 33 1 3.7930 13.3823 0.0232 34 1 1.2362 4.3859 0.0084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343546165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:10 Heat of formation + Delta-G solvation = -72.666752 kcal Electronic energy + Delta-G solvation = -20314.489765 eV Core-core repulsion = 16827.035440 eV Total energy + Delta-G solvation = -3487.454325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02765 -39.57070 -38.30936 -37.69120 -34.58175 -33.79611 -32.75716 -31.51108 -31.20650 -28.16365 -27.19860 -24.80553 -24.11350 -23.20390 -20.62189 -19.69739 -18.77402 -18.26532 -17.72986 -17.32881 -16.34162 -15.73169 -15.34737 -15.33151 -15.07169 -14.65704 -14.45022 -14.10732 -14.08101 -13.72382 -13.38355 -13.23516 -12.93618 -12.23992 -12.16351 -12.02086 -11.65582 -11.45726 -11.12389 -10.52639 -10.35533 -10.25931 -10.22185 -9.72065 -9.65485 -9.00794 -8.72472 -8.67833 -8.13301 -6.54073 -3.96287 0.53329 0.94840 2.74158 2.83636 3.12067 3.18475 3.20816 3.27681 3.66192 3.72424 3.94791 4.08882 4.57943 4.65323 4.79612 4.82770 4.89958 5.03285 5.03567 5.14360 5.32719 5.34660 5.56161 5.80886 5.90932 5.93521 6.01663 6.05965 6.55627 6.85408 7.43438 7.47190 7.67895 7.88541 8.29725 8.42012 9.01575 9.35805 9.83377 10.62645 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034335 B = 0.002990 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.303312 B = 9361.998262 C =10156.842283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.305 6.305 3 C 0.337 3.663 4 C -0.199 4.199 5 C 0.017 3.983 6 C -0.220 4.220 7 C 0.565 3.435 8 O -0.545 6.545 9 N -0.702 5.702 10 C 0.109 3.891 11 C 0.427 3.573 12 O -0.598 6.598 13 N -0.547 5.547 14 C -0.306 4.306 15 H 0.105 0.895 16 C 0.027 3.973 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.182 3.818 23 N -0.542 5.542 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.410 0.590 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -19.800 -0.015 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.212 6.212 3 C 0.159 3.841 4 C -0.219 4.219 5 C -0.009 4.009 6 C -0.226 4.226 7 C 0.351 3.649 8 O -0.424 6.424 9 N -0.355 5.355 10 C -0.018 4.018 11 C 0.212 3.788 12 O -0.485 6.485 13 N -0.182 5.182 14 C -0.436 4.436 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.024 3.976 23 N -0.266 5.266 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.249 0.751 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.695 -20.050 -0.023 20.121 hybrid contribution 0.107 1.085 0.006 1.091 sum -1.588 -18.965 -0.017 19.031 Atomic orbital electron populations 1.22929 0.76788 1.03116 1.02914 1.86203 1.23337 1.24535 1.87092 1.20121 0.89538 0.84788 0.89689 1.21034 0.91780 0.99587 1.09525 1.21533 1.01336 0.89601 0.88429 1.20830 0.95017 0.94829 1.11908 1.17814 0.86550 0.83655 0.76855 1.90771 1.13706 1.87059 1.50898 1.45610 1.11300 1.04919 1.73716 1.20996 0.95604 0.81717 1.03531 1.19710 0.89398 0.83861 0.85807 1.90495 1.19638 1.80842 1.57524 1.41784 1.10139 1.03828 1.62417 1.19689 0.90157 0.85284 1.48447 0.87673 1.25333 0.97299 0.98331 0.96691 1.69603 1.16246 1.18480 1.49087 0.85868 0.80038 0.78855 0.79186 1.19742 1.20839 1.19748 1.22783 0.91797 0.94056 0.88976 1.67346 1.40490 0.98601 1.20132 0.88486 0.91956 0.91961 0.83392 0.82679 0.75139 0.89549 0.89537 0.76992 0.91486 0.81445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.37 101.05 1.05 1.33 16 2 O -0.31 -3.13 10.46 -18.18 -0.19 -3.32 16 3 C 0.34 3.84 7.49 -16.96 -0.13 3.71 16 4 C -0.20 -1.99 10.02 -39.34 -0.39 -2.38 16 5 C 0.02 0.18 9.70 -38.91 -0.38 -0.19 16 6 C -0.22 -2.83 5.89 -104.82 -0.62 -3.45 16 7 C 0.57 8.80 7.77 -12.43 -0.10 8.70 16 8 O -0.55 -9.87 16.41 5.29 0.09 -9.78 16 9 N -0.70 -11.32 5.48 -62.50 -0.34 -11.67 16 10 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 11 C 0.43 9.53 7.85 -10.98 -0.09 9.44 16 12 O -0.60 -14.88 15.24 5.55 0.08 -14.79 16 13 N -0.55 -13.31 5.29 -10.96 -0.06 -13.36 16 14 C -0.31 -8.20 9.68 -14.93 -0.14 -8.35 16 15 H 0.11 2.92 7.16 -52.49 -0.38 2.55 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 17 N -0.89 -23.60 13.05 55.50 0.72 -22.88 16 18 Si 0.93 20.31 29.55 -169.99 -5.02 15.29 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 C 0.18 2.21 10.71 -17.14 -0.18 2.02 16 23 N -0.54 -6.63 9.18 -12.97 -0.12 -6.75 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.16 1.55 7.73 -52.49 -0.41 1.14 16 29 H 0.41 6.38 5.49 -40.82 -0.22 6.16 16 30 H 0.09 1.47 8.14 -51.92 -0.42 1.04 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.40 9.25 7.90 -40.82 -0.32 8.93 16 33 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.17 1.84 6.41 -52.49 -0.34 1.50 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -31.46 308.81 -4.62 -36.09 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -3.33 Total: 13.20 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -1.11 Total: 13.34 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.20 Total: -54.66 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.02 Total: -27.90 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.46 -4.62 -36.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.581 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds