Wall clock time and date at job start Tue Mar 31 2020 00:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35496 * 117.00337 * 2 1 4 4 C 1.39165 * 119.52796 * 180.02562 * 3 2 1 5 5 C 1.37964 * 119.26527 * 179.97438 * 4 3 2 6 6 C 1.40286 * 118.35458 * 359.97438 * 5 4 3 7 7 C 1.47613 * 120.49520 * 180.02562 * 6 5 4 8 8 O 1.21583 * 120.00144 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99586 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72388 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 O 1.21293 * 120.00086 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00069 * 180.02562 * 11 10 9 14 14 C 1.37097 * 120.00084 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00027 * 359.97438 * 14 13 11 16 16 C 1.38954 * 119.99944 * 179.97438 * 14 13 11 17 17 N 1.31410 * 120.00276 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99680 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46923 * 60.00279 * 18 16 14 20 20 H 1.48504 * 109.46709 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47176 * 300.00026 * 18 16 14 22 22 C 1.39528 * 119.00176 * 0.27547 * 6 5 4 23 23 N 1.31660 * 120.62831 * 359.42840 * 22 6 5 24 24 H 1.08996 * 109.47499 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46846 * 299.99669 * 1 2 3 26 26 H 1.09006 * 109.47262 * 59.99394 * 1 2 3 27 27 H 1.08001 * 120.37020 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.82342 * 180.02562 * 5 4 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 30 30 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 32 32 H 0.97002 * 120.00050 * 359.97438 * 13 11 10 33 33 H 0.96997 * 119.99888 * 179.97438 * 17 16 14 34 34 H 1.07998 * 119.68263 * 179.72554 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 3.4344 1.2685 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 3.2525 3.6511 -0.0016 7 6 3.8670 4.9933 -0.0028 8 8 5.0774 5.1077 -0.0037 9 7 3.0861 6.0918 -0.0038 10 6 3.6960 7.4239 0.0012 11 6 2.6132 8.4720 0.0058 12 8 1.4468 8.1392 0.0046 13 7 2.9408 9.7794 0.0103 14 6 1.9558 10.7329 0.0140 15 1 0.9172 10.4365 0.0129 16 6 2.2936 12.0808 0.0192 17 7 3.5572 12.4415 0.0200 18 14 0.9514 13.3800 0.0235 19 1 0.1084 13.2168 1.2351 20 1 1.5696 14.7302 0.0281 21 1 0.1093 13.2258 -1.1900 22 6 1.8646 3.5076 0.0043 23 7 1.3139 2.3118 -0.0010 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 4.0210 0.3617 -0.0005 28 1 5.1324 2.5775 -0.0019 29 1 2.1204 6.0006 -0.0034 30 1 4.3148 7.5369 0.8914 31 1 4.3140 7.5439 -0.8886 32 1 3.8736 10.0456 0.0109 33 1 3.7930 13.3823 0.0232 34 1 1.2362 4.3859 0.0084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343546165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:10 Heat of formation + Delta-G solvation = -97.870347 kcal Electronic energy + Delta-G solvation = -20315.582675 eV Core-core repulsion = 16827.035440 eV Total energy + Delta-G solvation = -3488.547235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.96379 -40.84449 -39.90548 -38.68682 -36.28051 -35.41349 -33.66162 -33.38671 -32.26539 -29.40660 -28.18287 -26.50906 -25.16920 -24.14829 -21.82527 -21.40656 -20.12870 -19.61159 -19.07561 -18.27963 -17.38554 -17.14013 -16.73898 -16.72901 -16.48313 -16.00215 -15.64198 -15.53708 -15.22040 -15.09523 -14.38396 -14.29375 -13.90903 -13.88132 -13.57669 -13.53478 -12.89590 -12.78447 -12.46328 -12.22408 -12.13518 -11.55654 -11.42136 -11.10432 -10.74580 -10.56113 -10.30309 -10.08841 -9.66958 -8.50540 -6.00641 -0.41901 0.09166 1.38576 1.43457 1.54043 1.71629 1.91370 1.91775 2.01021 2.31312 2.70757 3.06741 3.13255 3.16896 3.59240 3.75432 3.92043 4.03057 4.22607 4.42998 4.43504 4.43859 4.43965 4.56691 4.67578 4.79508 5.01420 5.16144 5.24790 5.38887 5.92004 6.05092 6.39395 6.49277 6.59012 7.02857 7.04954 7.44671 7.94777 8.66082 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034335 B = 0.002990 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.303312 B = 9361.998262 C =10156.842283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.330 3.670 4 C -0.189 4.189 5 C 0.019 3.981 6 C -0.234 4.234 7 C 0.571 3.429 8 O -0.572 6.572 9 N -0.703 5.703 10 C 0.121 3.879 11 C 0.432 3.568 12 O -0.624 6.624 13 N -0.559 5.559 14 C -0.338 4.338 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 0.996 3.004 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.270 1.270 22 C 0.181 3.819 23 N -0.555 5.555 24 H 0.127 0.873 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.178 0.822 28 H 0.166 0.834 29 H 0.412 0.588 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 -20.980 -0.013 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.214 6.214 3 C 0.152 3.848 4 C -0.209 4.209 5 C -0.007 4.007 6 C -0.240 4.240 7 C 0.359 3.641 8 O -0.453 6.453 9 N -0.357 5.357 10 C -0.007 4.007 11 C 0.219 3.781 12 O -0.512 6.512 13 N -0.194 5.194 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.819 3.181 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.195 1.195 22 C 0.024 3.976 23 N -0.279 5.279 24 H 0.145 0.855 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.195 0.805 28 H 0.184 0.816 29 H 0.252 0.748 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.234 0.766 33 H 0.089 0.911 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.784 -21.257 -0.021 21.332 hybrid contribution 0.101 1.294 0.005 1.298 sum -1.683 -19.963 -0.016 20.034 Atomic orbital electron populations 1.23150 0.75469 1.05038 1.02525 1.86213 1.24659 1.23856 1.86719 1.20454 0.90280 0.84927 0.89172 1.21304 0.91443 1.00197 1.07946 1.21702 1.01807 0.89372 0.87781 1.20655 0.95448 0.93820 1.14047 1.18116 0.86099 0.84206 0.75700 1.90754 1.14792 1.87494 1.52262 1.45605 1.11508 1.04488 1.74089 1.20834 0.93993 0.81122 1.04704 1.20409 0.90014 0.84033 0.83616 1.90474 1.21289 1.81364 1.58054 1.41832 1.09894 1.04315 1.63358 1.19707 0.89991 0.86555 1.50443 0.89502 1.26116 0.99480 0.99698 0.95781 1.69669 1.17557 1.19140 1.49229 0.84944 0.77469 0.76575 0.79111 1.19480 1.19692 1.19495 1.22829 0.91636 0.94386 0.88792 1.67356 1.40938 0.98826 1.20758 0.85482 0.92332 0.92344 0.80510 0.81613 0.74816 0.88315 0.88308 0.76644 0.91062 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.37 113.37 1.18 1.61 16 2 O -0.31 -5.69 10.46 -87.97 -0.92 -6.61 16 3 C 0.33 6.93 7.49 84.83 0.64 7.56 16 4 C -0.19 -3.33 10.02 22.43 0.22 -3.10 16 5 C 0.02 0.38 9.70 22.70 0.22 0.60 16 6 C -0.23 -5.80 5.89 -19.99 -0.12 -5.92 16 7 C 0.57 17.35 7.77 86.72 0.67 18.03 16 8 O -0.57 -20.23 16.41 -3.98 -0.07 -20.29 16 9 N -0.70 -22.35 5.48 -469.92 -2.58 -24.92 16 10 C 0.12 4.25 6.15 85.63 0.53 4.77 16 11 C 0.43 19.41 7.85 87.66 0.69 20.10 16 12 O -0.62 -31.36 15.24 -3.07 -0.05 -31.40 16 13 N -0.56 -27.51 5.29 -306.98 -1.62 -29.13 16 14 C -0.34 -18.35 9.68 84.04 0.81 -17.53 16 15 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 16 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 17 N -0.92 -48.21 13.05 21.66 0.28 -47.93 16 18 Si 1.00 41.33 29.55 68.60 2.03 43.36 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 C 0.18 4.28 10.71 85.03 0.91 5.19 16 23 N -0.55 -12.98 9.18 -307.82 -2.82 -15.81 16 24 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.84 8.10 -2.38 -0.02 0.82 16 26 H 0.06 0.84 8.10 -2.38 -0.02 0.82 16 27 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.17 3.00 7.73 -2.91 -0.02 2.98 16 29 H 0.41 12.78 5.49 -92.71 -0.51 12.27 16 30 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 31 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 33 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 34 H 0.17 3.75 6.41 -2.91 -0.02 3.73 16 Total: -1.00 -66.40 308.81 0.40 -66.00 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.07 Total: 35.46 kcal Atomic # 6 Polarization: 25.05 SS G_CDS: 6.22 Total: 31.27 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.74 Total: -117.79 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -1.03 Total: -58.31 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -66.40 0.40 -66.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.871 kcal (2) G-P(sol) polarization free energy of solvation -66.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds