Wall clock time and date at job start Tue Mar 31 2020 00:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37712 * 125.63684 * 2 1 4 4 C 1.46412 * 126.27337 * 359.94834 * 3 2 1 5 5 O 1.21646 * 119.99993 * 353.31733 * 4 3 2 6 6 N 1.34768 * 120.00178 * 173.31250 * 4 3 2 7 7 C 1.33238 * 120.00348 * 178.60651 * 6 4 3 8 8 H 1.08001 * 119.99204 * 322.60479 * 7 6 4 9 9 C 1.46782 * 120.00229 * 142.61112 * 7 6 4 10 10 N 1.29314 * 120.00180 * 353.16822 * 9 7 6 11 11 Si 1.86804 * 119.99801 * 173.16555 * 9 7 6 12 12 H 1.48503 * 109.47311 * 179.97438 * 11 9 7 13 13 H 1.48493 * 109.47410 * 300.00455 * 11 9 7 14 14 H 1.48503 * 109.46789 * 60.00185 * 11 9 7 15 15 C 1.46501 * 119.99959 * 358.60069 * 6 4 3 16 16 C 1.53008 * 117.49651 * 159.93646 * 15 6 4 17 17 C 1.52997 * 117.49801 * 91.31668 * 15 6 4 18 18 C 1.38149 * 107.45518 * 180.21038 * 3 2 1 19 19 C 1.39718 * 106.96126 * 359.64167 * 18 3 2 20 20 C 1.34949 * 125.63544 * 179.97438 * 2 1 3 21 21 N 1.48022 * 125.50281 * 359.97438 * 20 2 1 22 22 O 1.31707 * 119.99848 * 359.97438 * 21 20 2 23 23 O 1.31694 * 120.00278 * 179.97438 * 21 20 2 24 24 H 1.09003 * 109.47475 * 95.08909 * 1 2 3 25 25 H 1.09003 * 109.47187 * 215.09462 * 1 2 3 26 26 H 1.09005 * 109.46985 * 335.09189 * 1 2 3 27 27 H 0.97001 * 120.00038 * 175.15040 * 10 9 7 28 28 H 1.08996 * 115.55001 * 305.64336 * 15 6 4 29 29 H 1.09000 * 117.49776 * 359.97438 * 16 15 6 30 30 H 1.09006 * 117.49514 * 145.02615 * 16 15 6 31 31 H 1.08997 * 117.50080 * 214.97999 * 17 15 6 32 32 H 1.09001 * 117.49596 * 359.97373 * 17 15 6 33 33 H 1.07998 * 126.51522 * 179.74501 * 18 3 2 34 34 H 1.08001 * 126.06767 * 180.16638 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2674 1.1192 0.0000 4 6 1.8128 2.5110 -0.0011 5 8 0.6294 2.7642 -0.1247 6 7 2.7053 3.5115 0.1350 7 6 2.2950 4.7788 0.1062 8 1 1.5018 5.0744 -0.5646 9 6 2.9210 5.7732 0.9859 10 7 3.7761 5.3979 1.8804 11 14 2.4826 7.5808 0.8131 12 1 3.2452 8.3728 1.8113 13 1 2.8263 8.0450 -0.5549 14 1 1.0271 7.7615 1.0460 15 6 4.1267 3.2058 0.3147 16 6 5.1332 4.3139 -0.0020 17 6 4.9942 3.1150 -0.9423 18 6 3.5799 0.6882 -0.0048 19 6 3.5502 -0.7087 0.0006 20 6 2.2513 -1.0968 0.0005 21 7 1.7727 -2.4975 0.0017 22 8 0.4805 -2.7519 0.0028 23 8 2.6391 -3.4894 0.0015 24 1 -0.3634 -0.0912 -1.0236 25 1 -0.3634 -0.8409 0.5908 26 1 -0.3633 0.9321 0.4328 27 1 4.2422 6.0605 2.4140 28 1 4.3621 2.5319 1.1384 29 1 4.7377 5.2701 -0.3444 30 1 6.0311 4.3691 0.6136 31 1 5.8006 2.3816 -0.9455 32 1 4.5072 3.2824 -1.9030 33 1 4.4613 1.3123 -0.0100 34 1 4.4094 -1.3630 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346499936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:59 Heat of formation + Delta-G solvation = 104.679593 kcal Electronic energy + Delta-G solvation = -22089.101944 eV Core-core repulsion = 18609.337934 eV Total energy + Delta-G solvation = -3479.764010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.75171 -39.06910 -38.11103 -36.52909 -34.31060 -33.30129 -32.89556 -31.94936 -30.24346 -26.84613 -26.50887 -24.55278 -22.59515 -21.92165 -21.11512 -20.60789 -19.21820 -18.14159 -17.69651 -17.22176 -16.34522 -16.18419 -15.46467 -15.11408 -14.78608 -14.40086 -13.96796 -13.72772 -13.50489 -13.09347 -12.98049 -12.30440 -12.24394 -11.97308 -11.64482 -11.43422 -11.09257 -11.03565 -10.80903 -10.74892 -10.63065 -10.52928 -10.13451 -9.54548 -9.11734 -8.92812 -8.79505 -8.50116 -8.07127 -6.83858 -4.18249 -0.37394 1.09947 1.71160 2.56426 2.72841 2.94964 2.99236 3.02814 3.77855 3.89715 4.31897 4.42636 4.78082 4.86334 4.95871 5.09908 5.42343 5.43589 5.51027 5.57335 5.73676 5.81406 5.88944 5.97119 6.05934 6.14024 6.36158 6.51565 6.68506 6.70765 6.89830 6.90813 6.96314 7.16682 7.75925 8.05492 8.70717 8.91351 9.65245 10.11926 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.005181 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.985796 B = 5403.089659 C = 6061.339662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.395 5.395 3 C 0.103 3.897 4 C 0.472 3.528 5 O -0.585 6.585 6 N -0.348 5.348 7 C -0.340 4.340 8 H 0.103 0.897 9 C 0.054 3.946 10 N -0.805 5.805 11 Si 0.927 3.073 12 H -0.279 1.279 13 H -0.266 1.266 14 H -0.265 1.265 15 C 0.078 3.922 16 C -0.117 4.117 17 C -0.224 4.224 18 C -0.197 4.197 19 C -0.080 4.080 20 C 0.076 3.924 21 N 0.030 4.970 22 O -0.221 6.221 23 O -0.192 6.192 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.283 0.717 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.190 0.810 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -2.448 -1.794 5.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.072 5.072 3 C -0.021 4.021 4 C 0.264 3.736 5 O -0.472 6.472 6 N -0.061 5.061 7 C -0.470 4.470 8 H 0.121 0.879 9 C -0.163 4.163 10 N -0.435 5.435 11 Si 0.751 3.249 12 H -0.204 1.204 13 H -0.190 1.190 14 H -0.189 1.189 15 C -0.027 4.027 16 C -0.155 4.155 17 C -0.263 4.263 18 C -0.221 4.221 19 C -0.110 4.110 20 C -0.125 4.125 21 N 0.491 4.509 22 O -0.400 6.400 23 O -0.374 6.374 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.136 0.864 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.207 0.793 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.693 -1.878 -1.625 4.450 hybrid contribution -0.286 0.217 0.076 0.367 sum 3.407 -1.661 -1.549 4.095 Atomic orbital electron populations 1.22658 0.74183 1.06789 1.04713 1.43552 1.08157 1.02763 1.52744 1.21493 0.89470 0.88597 1.02524 1.16668 0.86121 0.81625 0.89170 1.90626 1.15592 1.83118 1.57912 1.41564 1.03113 1.04820 1.56574 1.20367 1.23156 0.82616 1.20885 0.87902 1.27083 0.95318 1.01303 0.92586 1.68976 1.21183 1.37188 1.16155 0.85990 0.79869 0.80211 0.78830 1.20393 1.19040 1.18924 1.21739 0.81571 1.02891 0.96468 1.22882 0.98905 0.94319 0.99384 1.23690 1.03086 1.03421 0.96096 1.22694 0.97393 0.93286 1.08700 1.20938 0.92888 0.96360 1.00789 1.19658 0.90486 0.75922 1.26396 1.49369 1.02642 1.02467 0.96451 1.96230 0.92565 1.92419 1.58746 1.96257 1.49455 1.33965 1.57723 0.90056 0.88706 0.86409 0.90437 0.86890 0.87994 0.89554 0.89082 0.89102 0.79316 0.81687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 9.89 59.85 0.59 1.55 16 2 N -0.40 -7.33 3.15 -116.73 -0.37 -7.70 16 3 C 0.10 1.99 6.81 -81.97 -0.56 1.43 16 4 C 0.47 10.78 7.56 -12.97 -0.10 10.68 16 5 O -0.58 -14.87 14.48 5.24 0.08 -14.80 16 6 N -0.35 -7.82 2.81 -107.76 -0.30 -8.12 16 7 C -0.34 -8.15 8.58 -13.49 -0.12 -8.27 16 8 H 0.10 2.61 7.76 -52.49 -0.41 2.21 16 9 C 0.05 1.20 3.85 -15.16 -0.06 1.14 16 10 N -0.81 -17.65 10.39 56.00 0.58 -17.07 16 11 Si 0.93 17.45 29.65 -169.99 -5.04 12.41 16 12 H -0.28 -5.11 7.11 56.52 0.40 -4.70 16 13 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 14 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 15 C 0.08 1.45 3.01 -67.93 -0.20 1.25 16 16 C -0.12 -2.03 7.60 -26.73 -0.20 -2.24 16 17 C -0.22 -3.46 8.88 -26.73 -0.24 -3.69 16 18 C -0.20 -3.20 8.82 -39.06 -0.34 -3.54 16 19 C -0.08 -1.23 10.49 -39.98 -0.42 -1.65 16 20 C 0.08 1.34 7.91 -144.53 -1.14 0.20 16 21 N 0.03 0.56 4.98 32.92 0.16 0.73 16 22 O -0.22 -4.22 17.35 -31.57 -0.55 -4.76 16 23 O -0.19 -3.55 19.73 -31.56 -0.62 -4.17 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.09 1.49 6.37 -51.93 -0.33 1.16 16 26 H 0.12 2.13 6.19 -51.93 -0.32 1.81 16 27 H 0.28 5.78 8.27 -40.82 -0.34 5.44 16 28 H 0.11 2.03 6.62 -51.93 -0.34 1.69 16 29 H 0.10 1.97 6.14 -51.93 -0.32 1.65 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.13 7.70 -51.93 -0.40 0.73 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.19 2.74 3.15 -52.49 -0.17 2.57 16 34 H 0.17 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -26.96 291.95 -7.56 -34.52 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -3.11 Total: 7.70 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.79 Total: -3.14 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.08 Total: -32.16 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -1.09 Total: -23.74 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.04 Total: 12.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.96 -7.56 -34.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346499936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.203 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds