Wall clock time and date at job start Tue Mar 31 2020 00:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37712 * 125.63684 * 2 1 4 4 C 1.46412 * 126.27337 * 359.94834 * 3 2 1 5 5 O 1.21646 * 119.99993 * 353.31733 * 4 3 2 6 6 N 1.34768 * 120.00178 * 173.31250 * 4 3 2 7 7 C 1.33238 * 120.00348 * 178.60651 * 6 4 3 8 8 H 1.08001 * 119.99204 * 322.60479 * 7 6 4 9 9 C 1.46782 * 120.00229 * 142.61112 * 7 6 4 10 10 N 1.29314 * 120.00180 * 353.16822 * 9 7 6 11 11 Si 1.86804 * 119.99801 * 173.16555 * 9 7 6 12 12 H 1.48503 * 109.47311 * 179.97438 * 11 9 7 13 13 H 1.48493 * 109.47410 * 300.00455 * 11 9 7 14 14 H 1.48503 * 109.46789 * 60.00185 * 11 9 7 15 15 C 1.46501 * 119.99959 * 358.60069 * 6 4 3 16 16 C 1.53008 * 117.49651 * 159.93646 * 15 6 4 17 17 C 1.52997 * 117.49801 * 91.31668 * 15 6 4 18 18 C 1.38149 * 107.45518 * 180.21038 * 3 2 1 19 19 C 1.39718 * 106.96126 * 359.64167 * 18 3 2 20 20 C 1.34949 * 125.63544 * 179.97438 * 2 1 3 21 21 N 1.48022 * 125.50281 * 359.97438 * 20 2 1 22 22 O 1.31707 * 119.99848 * 359.97438 * 21 20 2 23 23 O 1.31694 * 120.00278 * 179.97438 * 21 20 2 24 24 H 1.09003 * 109.47475 * 95.08909 * 1 2 3 25 25 H 1.09003 * 109.47187 * 215.09462 * 1 2 3 26 26 H 1.09005 * 109.46985 * 335.09189 * 1 2 3 27 27 H 0.97001 * 120.00038 * 175.15040 * 10 9 7 28 28 H 1.08996 * 115.55001 * 305.64336 * 15 6 4 29 29 H 1.09000 * 117.49776 * 359.97438 * 16 15 6 30 30 H 1.09006 * 117.49514 * 145.02615 * 16 15 6 31 31 H 1.08997 * 117.50080 * 214.97999 * 17 15 6 32 32 H 1.09001 * 117.49596 * 359.97373 * 17 15 6 33 33 H 1.07998 * 126.51522 * 179.74501 * 18 3 2 34 34 H 1.08001 * 126.06767 * 180.16638 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2674 1.1192 0.0000 4 6 1.8128 2.5110 -0.0011 5 8 0.6294 2.7642 -0.1247 6 7 2.7053 3.5115 0.1350 7 6 2.2950 4.7788 0.1062 8 1 1.5018 5.0744 -0.5646 9 6 2.9210 5.7732 0.9859 10 7 3.7761 5.3979 1.8804 11 14 2.4826 7.5808 0.8131 12 1 3.2452 8.3728 1.8113 13 1 2.8263 8.0450 -0.5549 14 1 1.0271 7.7615 1.0460 15 6 4.1267 3.2058 0.3147 16 6 5.1332 4.3139 -0.0020 17 6 4.9942 3.1150 -0.9423 18 6 3.5799 0.6882 -0.0048 19 6 3.5502 -0.7087 0.0006 20 6 2.2513 -1.0968 0.0005 21 7 1.7727 -2.4975 0.0017 22 8 0.4805 -2.7519 0.0028 23 8 2.6391 -3.4894 0.0015 24 1 -0.3634 -0.0912 -1.0236 25 1 -0.3634 -0.8409 0.5908 26 1 -0.3633 0.9321 0.4328 27 1 4.2422 6.0605 2.4140 28 1 4.3621 2.5319 1.1384 29 1 4.7377 5.2701 -0.3444 30 1 6.0311 4.3691 0.6136 31 1 5.8006 2.3816 -0.9455 32 1 4.5072 3.2824 -1.9030 33 1 4.4613 1.3123 -0.0100 34 1 4.4094 -1.3630 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346499936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:59 Heat of formation + Delta-G solvation = 90.916269 kcal Electronic energy + Delta-G solvation = -22089.698766 eV Core-core repulsion = 18609.337934 eV Total energy + Delta-G solvation = -3480.360833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.16840 -40.63354 -39.57688 -38.13808 -35.76094 -34.91485 -34.29932 -33.58018 -31.70552 -28.35919 -27.92554 -26.14966 -24.07687 -23.24953 -22.63175 -21.98054 -20.72537 -19.59020 -19.15459 -18.80461 -17.83464 -17.68835 -17.12847 -16.62988 -16.26167 -15.88204 -15.48804 -15.09655 -15.04643 -14.53326 -14.35618 -13.87719 -13.63096 -13.38701 -13.16464 -12.93799 -12.74592 -12.56378 -12.25190 -12.14263 -12.03986 -11.99430 -11.62461 -11.03159 -10.65514 -10.48044 -10.27852 -9.96415 -9.70755 -8.50655 -5.97567 -1.80984 -0.32662 0.26027 1.23111 1.31459 1.42951 1.45518 1.50357 2.22075 2.26491 2.77586 2.86203 3.28625 3.51881 3.58079 3.66488 4.03534 4.11337 4.16567 4.22796 4.35495 4.48485 4.53537 4.61049 4.78691 4.95073 4.99669 5.12348 5.22194 5.38759 5.40149 5.46814 5.58931 5.72521 6.00595 6.35634 7.00276 7.23987 7.95856 8.43829 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.005181 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.985796 B = 5403.089659 C = 6061.339662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.406 5.406 3 C 0.078 3.922 4 C 0.456 3.544 5 O -0.630 6.630 6 N -0.354 5.354 7 C -0.384 4.384 8 H 0.070 0.930 9 C 0.037 3.963 10 N -0.814 5.814 11 Si 0.979 3.021 12 H -0.262 1.262 13 H -0.261 1.261 14 H -0.281 1.281 15 C 0.052 3.948 16 C -0.120 4.120 17 C -0.191 4.191 18 C -0.173 4.173 19 C -0.057 4.057 20 C 0.067 3.933 21 N 0.028 4.972 22 O -0.248 6.248 23 O -0.171 6.171 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.292 0.708 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.212 0.788 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -3.528 -1.697 8.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.083 5.083 3 C -0.044 4.044 4 C 0.249 3.751 5 O -0.521 6.521 6 N -0.066 5.066 7 C -0.514 4.514 8 H 0.088 0.912 9 C -0.180 4.180 10 N -0.443 5.443 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.185 1.185 14 H -0.207 1.207 15 C -0.051 4.051 16 C -0.158 4.158 17 C -0.229 4.229 18 C -0.197 4.197 19 C -0.086 4.086 20 C -0.133 4.133 21 N 0.489 4.511 22 O -0.420 6.420 23 O -0.360 6.360 24 H 0.106 0.894 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.140 0.860 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.228 0.772 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.601 -2.918 -1.520 7.375 hybrid contribution -1.147 0.403 0.051 1.217 sum 5.453 -2.515 -1.470 6.183 Atomic orbital electron populations 1.22598 0.74129 1.06106 1.05142 1.43664 1.08552 1.03017 1.53086 1.21182 0.91011 0.87313 1.04925 1.17192 0.85835 0.83241 0.88842 1.90574 1.17475 1.84272 1.59794 1.41706 1.04754 1.04174 1.55948 1.20179 1.24338 0.84208 1.22664 0.91208 1.27532 0.94853 1.03673 0.91908 1.68973 1.21022 1.38365 1.15899 0.85232 0.78602 0.76652 0.79351 1.18579 1.18500 1.20686 1.21961 0.79745 1.04562 0.98882 1.22843 0.98883 0.93609 1.00472 1.23748 1.02297 1.02847 0.94007 1.22934 0.96383 0.93843 1.06523 1.21455 0.92916 0.96160 0.98068 1.20031 0.91205 0.75356 1.26683 1.49471 1.02624 1.02792 0.96204 1.96247 0.92776 1.92553 1.60400 1.96239 1.49280 1.34208 1.56223 0.89423 0.87698 0.88298 0.89584 0.86000 0.90483 0.87647 0.84514 0.90230 0.77211 0.77525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.09 9.89 127.77 1.26 3.36 16 2 N -0.41 -14.83 3.15 -523.23 -1.65 -16.48 16 3 C 0.08 3.00 6.81 40.33 0.27 3.27 16 4 C 0.46 21.56 7.56 86.37 0.65 22.22 16 5 O -0.63 -34.13 14.48 -4.18 -0.06 -34.19 16 6 N -0.35 -16.29 2.81 -613.08 -1.72 -18.01 16 7 C -0.38 -19.29 8.58 86.72 0.74 -18.55 16 8 H 0.07 3.85 7.76 -2.91 -0.02 3.83 16 9 C 0.04 1.66 3.85 87.30 0.34 2.00 16 10 N -0.81 -35.29 10.39 23.26 0.24 -35.05 16 11 Si 0.98 36.18 29.65 68.60 2.03 38.22 16 12 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 13 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 14 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 15 C 0.05 1.87 3.01 44.99 0.14 2.01 16 16 C -0.12 -3.96 7.60 30.60 0.23 -3.72 16 17 C -0.19 -5.30 8.88 30.59 0.27 -5.02 16 18 C -0.17 -5.05 8.82 22.61 0.20 -4.85 16 19 C -0.06 -1.50 10.49 22.01 0.23 -1.27 16 20 C 0.07 2.22 7.91 128.11 1.01 3.24 16 21 N 0.03 0.98 4.98 -49.78 -0.25 0.73 16 22 O -0.25 -9.18 17.35 3.50 0.06 -9.12 16 23 O -0.17 -5.71 19.73 3.52 0.07 -5.65 16 24 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 25 H 0.10 3.36 6.37 -2.39 -0.02 3.34 16 26 H 0.10 3.83 6.19 -2.38 -0.01 3.81 16 27 H 0.29 11.55 8.27 -92.71 -0.77 10.79 16 28 H 0.12 4.09 6.62 -2.39 -0.02 4.07 16 29 H 0.08 2.95 6.14 -2.39 -0.01 2.93 16 30 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 31 H 0.14 2.58 7.70 -2.39 -0.02 2.56 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.21 5.16 3.15 -2.91 -0.01 5.15 16 34 H 0.21 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -60.88 291.95 5.24 -55.64 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 1.16 Total: 21.24 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.35 Total: 2.67 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -3.37 Total: -68.80 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: 0.07 Total: -48.96 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.22 kcal Total: -60.88 5.24 -55.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346499936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.552 kcal (2) G-P(sol) polarization free energy of solvation -60.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds