Wall clock time and date at job start Tue Mar 31 2020 00:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34661 * 117.00106 * 2 1 4 4 O 1.21410 * 119.99827 * 0.02562 * 3 2 1 5 5 C 1.48220 * 120.00272 * 179.97438 * 3 2 1 6 6 C 1.39698 * 120.00182 * 180.02562 * 5 3 2 7 7 N 1.31805 * 119.99358 * 179.97438 * 6 5 3 8 8 C 1.32945 * 120.00211 * 359.97438 * 7 6 5 9 9 C 1.48320 * 120.00187 * 179.97438 * 8 7 6 10 10 O 1.21490 * 119.99895 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99398 * 0.02562 * 9 8 7 12 12 C 1.46495 * 119.99388 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.47981 * 34.99768 * 12 11 9 14 14 C 1.53002 * 109.46950 * 274.99377 * 12 11 9 15 15 C 1.50707 * 109.46964 * 155.00106 * 12 11 9 16 16 H 1.07997 * 120.00412 * 34.99750 * 15 12 11 17 17 C 1.37878 * 119.99902 * 215.00059 * 15 12 11 18 18 N 1.31508 * 120.00170 * 184.90962 * 17 15 12 19 19 Si 1.86807 * 119.99876 * 4.91088 * 17 15 12 20 20 H 1.48503 * 109.47044 * 84.83582 * 19 17 15 21 21 H 1.48503 * 109.47110 * 204.83208 * 19 17 15 22 22 H 1.48499 * 109.47347 * 324.83521 * 19 17 15 23 23 C 1.39643 * 120.00612 * 0.27602 * 8 7 6 24 24 N 1.31828 * 120.00194 * 359.43649 * 23 8 7 25 25 H 1.08998 * 109.46860 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47104 * 299.99432 * 1 2 3 27 27 H 1.09001 * 109.47384 * 59.99831 * 1 2 3 28 28 H 1.08002 * 120.00500 * 359.96079 * 6 5 3 29 29 H 0.97000 * 120.00441 * 359.97438 * 11 9 8 30 30 H 1.09006 * 109.47034 * 175.03948 * 14 12 11 31 31 H 1.08993 * 109.47019 * 55.04390 * 14 12 11 32 32 H 1.09001 * 109.47478 * 295.03781 * 14 12 11 33 33 H 0.96999 * 120.00090 * 179.97438 * 18 17 15 34 34 H 1.08000 * 119.99954 * 179.73012 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4021 2.2181 0.0005 5 6 3.5436 1.2774 0.0006 6 6 4.1778 2.5222 0.0011 7 7 5.4940 2.5910 0.0021 8 6 6.2180 1.4760 0.0032 9 6 7.6992 1.5534 0.0037 10 8 8.3607 0.5344 0.0042 11 7 8.3111 2.7543 0.0037 12 6 9.7740 2.8308 0.0037 13 1 10.1810 2.0092 -0.5856 14 6 10.2899 2.7320 1.4408 15 6 10.2084 4.1431 -0.5967 16 1 9.6188 5.0331 -0.4337 17 6 11.3586 4.2074 -1.3544 18 7 11.7900 5.3679 -1.7975 19 14 12.3040 2.6459 -1.7514 20 1 11.7144 2.0022 -2.9528 21 1 13.7258 2.9822 -2.0174 22 1 12.2234 1.7120 -0.5996 23 6 5.5841 0.2317 -0.0027 24 7 4.2676 0.1626 0.0020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.5896 3.4280 0.0005 29 1 7.7828 3.5679 0.0030 30 1 11.3794 2.7003 1.4344 31 1 9.9027 1.8247 1.9042 32 1 9.9551 3.6009 2.0076 33 1 12.5994 5.4132 -2.3302 34 1 6.1723 -0.6740 -0.0062 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355144737.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:56 Heat of formation + Delta-G solvation = -90.151343 kcal Electronic energy + Delta-G solvation = -20695.909596 eV Core-core repulsion = 17207.697082 eV Total energy + Delta-G solvation = -3488.212514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.77742 -41.38935 -40.37187 -37.73884 -36.87095 -35.94273 -34.38373 -33.33269 -31.58958 -29.10857 -27.37682 -27.20188 -25.87360 -23.74242 -22.67996 -21.52316 -20.10100 -19.69100 -18.94124 -18.33958 -18.02606 -17.69632 -17.10279 -16.55574 -16.49098 -16.18402 -15.59844 -15.44455 -14.95107 -14.55948 -14.42253 -14.30289 -14.23445 -13.34462 -13.13827 -13.06217 -13.01773 -12.79896 -12.69532 -12.46807 -12.18795 -11.88234 -11.86771 -11.46654 -11.25936 -10.87371 -10.85096 -10.52428 -9.94616 -8.38489 -6.46422 -1.40137 -0.32895 0.84430 1.25415 1.32477 1.36967 1.46674 1.66929 1.97168 2.28231 2.47497 2.60693 2.70812 2.97267 3.05299 3.55889 3.70894 3.74390 4.26257 4.32085 4.35201 4.42806 4.71596 4.72788 4.79539 4.84025 5.04149 5.05611 5.32193 5.44201 5.57340 5.63890 6.01842 6.14899 6.42007 6.58157 6.71473 7.09110 7.24356 8.76444 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037847 B = 0.003466 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.638657 B = 8076.335380 C = 8381.697375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.342 6.342 3 C 0.535 3.465 4 O -0.500 6.500 5 C 0.053 3.947 6 C 0.125 3.875 7 N -0.419 5.419 8 C 0.067 3.933 9 C 0.557 3.443 10 O -0.562 6.562 11 N -0.677 5.677 12 C 0.232 3.768 13 H 0.041 0.959 14 C -0.143 4.143 15 C -0.530 4.530 16 H 0.054 0.946 17 C 0.033 3.967 18 N -0.929 5.929 19 Si 0.928 3.072 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.248 1.248 23 C 0.110 3.890 24 N -0.392 5.392 25 H 0.133 0.867 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.216 0.784 29 H 0.411 0.589 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.271 0.729 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.389 -10.772 4.402 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.257 6.257 3 C 0.377 3.623 4 O -0.387 6.387 5 C -0.089 4.089 6 C -0.037 4.037 7 N -0.136 5.136 8 C -0.075 4.075 9 C 0.340 3.660 10 O -0.442 6.442 11 N -0.325 5.325 12 C 0.129 3.871 13 H 0.058 0.942 14 C -0.201 4.201 15 C -0.569 4.569 16 H 0.073 0.927 17 C -0.168 4.168 18 N -0.568 5.568 19 Si 0.752 3.248 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.172 1.172 23 C -0.052 4.052 24 N -0.109 5.109 25 H 0.152 0.848 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.232 0.768 29 H 0.247 0.753 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -19.987 -11.074 4.308 23.253 hybrid contribution 0.306 0.261 -0.440 0.596 sum -19.681 -10.813 3.868 22.787 Atomic orbital electron populations 1.23750 0.73327 1.06296 1.03325 1.86659 1.25780 1.30607 1.82623 1.20338 0.86775 0.82357 0.72828 1.90878 1.65650 1.36448 1.45755 1.21533 0.92940 0.91930 1.02447 1.24244 0.89818 0.98878 0.90723 1.68622 1.07166 1.30060 1.07763 1.22577 0.95414 0.91921 0.97632 1.18002 0.85619 0.84467 0.77879 1.90748 1.65505 1.35278 1.52637 1.46424 1.09013 1.07816 1.69229 1.19072 0.77004 0.96171 0.94895 0.94151 1.22125 1.00734 1.00192 0.97076 1.21159 1.09422 0.94026 1.32244 0.92739 1.25658 0.97914 0.98789 0.94466 1.69981 1.24120 1.26184 1.36475 0.86034 0.78198 0.80572 0.80006 1.19784 1.20374 1.17182 1.24088 0.89814 0.98982 0.92314 1.68646 1.06584 1.29818 1.05875 0.84847 0.90994 0.91083 0.76760 0.75258 0.92735 0.93769 0.92508 0.91938 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.46 16 2 O -0.34 -6.32 10.39 -55.70 -0.58 -6.90 16 3 C 0.54 11.14 7.96 70.48 0.56 11.70 16 4 O -0.50 -11.29 16.13 20.13 0.32 -10.96 16 5 C 0.05 1.17 6.76 41.99 0.28 1.46 16 6 C 0.12 2.70 10.77 85.05 0.92 3.62 16 7 N -0.42 -11.23 9.70 -183.28 -1.78 -13.01 16 8 C 0.07 1.93 6.76 42.00 0.28 2.22 16 9 C 0.56 20.26 7.78 86.93 0.68 20.94 16 10 O -0.56 -22.83 16.00 -3.69 -0.06 -22.89 16 11 N -0.68 -26.74 5.06 -448.53 -2.27 -29.01 16 12 C 0.23 10.58 2.22 44.25 0.10 10.67 16 13 H 0.04 1.97 4.73 -2.39 -0.01 1.95 16 14 C -0.14 -5.84 9.47 71.98 0.68 -5.16 16 15 C -0.53 -28.23 9.05 25.60 0.23 -28.00 16 16 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 17 C 0.03 1.79 5.47 84.66 0.46 2.25 16 18 N -0.93 -54.77 13.96 21.45 0.30 -54.47 16 19 Si 0.93 42.99 26.99 68.60 1.85 44.84 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.25 -10.96 6.82 99.48 0.68 -10.28 16 23 C 0.11 2.72 10.77 85.03 0.92 3.64 16 24 N -0.39 -9.34 10.27 -183.37 -1.88 -11.23 16 25 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.22 3.48 7.64 -2.91 -0.02 3.46 16 29 H 0.41 15.28 7.94 -92.71 -0.74 14.55 16 30 H 0.05 2.22 8.14 -2.38 -0.02 2.21 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.21 4.49 7.64 -2.91 -0.02 4.47 16 Total: -1.00 -65.60 310.27 2.60 -62.99 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.39 Total: 15.83 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 6.31 Total: 24.80 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -5.63 Total: -107.72 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.31 Total: -40.75 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.85 Total: 44.84 kcal Total: -65.60 2.60 -62.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355144737.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.157 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds