Wall clock time and date at job start Tue Mar 31 2020 00:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34661 * 117.00305 * 2 1 4 4 O 1.21413 * 119.99894 * 359.97438 * 3 2 1 5 5 C 1.48219 * 120.00162 * 180.02562 * 3 2 1 6 6 C 1.39698 * 120.00588 * 179.97438 * 5 3 2 7 7 N 1.31808 * 119.99794 * 180.02562 * 6 5 3 8 8 C 1.32944 * 119.99654 * 359.97438 * 7 6 5 9 9 C 1.48318 * 119.99271 * 180.02562 * 8 7 6 10 10 O 1.21493 * 119.99934 * 179.97438 * 9 8 7 11 11 N 1.34782 * 120.00180 * 0.02562 * 9 8 7 12 12 C 1.46493 * 120.00011 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47450 * 325.00268 * 12 11 9 14 14 C 1.53003 * 109.47141 * 85.00005 * 12 11 9 15 15 C 1.50696 * 109.47147 * 204.99697 * 12 11 9 16 16 H 1.08003 * 120.00247 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00407 * 180.02562 * 15 12 11 18 18 N 1.31510 * 119.99911 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00367 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47132 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47356 * 119.99469 * 19 17 15 22 22 H 1.48494 * 109.47465 * 239.99953 * 19 17 15 23 23 C 1.39636 * 120.01037 * 359.97438 * 8 7 6 24 24 N 1.31815 * 120.00500 * 0.02562 * 23 8 7 25 25 H 1.09001 * 109.46706 * 300.00291 * 1 2 3 26 26 H 1.09003 * 109.47147 * 60.00088 * 1 2 3 27 27 H 1.08994 * 109.47531 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00018 * 359.97438 * 6 5 3 29 29 H 0.97000 * 119.99925 * 359.97438 * 11 9 8 30 30 H 1.08996 * 109.47427 * 299.99937 * 14 12 11 31 31 H 1.09001 * 109.47157 * 59.99693 * 14 12 11 32 32 H 1.09000 * 109.47216 * 179.97438 * 14 12 11 33 33 H 0.96999 * 120.00545 * 180.02562 * 18 17 15 34 34 H 1.08001 * 119.99938 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4022 2.2181 -0.0005 5 6 3.5436 1.2773 -0.0006 6 6 4.1779 2.5220 -0.0011 7 7 5.4942 2.5908 -0.0021 8 6 6.2180 1.4756 -0.0021 9 6 7.6992 1.5531 -0.0027 10 8 8.3608 0.5341 -0.0022 11 7 8.3113 2.7539 -0.0027 12 6 9.7742 2.8304 -0.0027 13 1 10.1810 2.0088 0.5867 14 6 10.2901 2.7315 -1.4397 15 6 10.2086 4.1426 0.5977 16 1 9.4689 4.8488 0.9449 17 6 11.5504 4.4417 0.7037 18 7 12.4512 3.5817 0.2813 19 14 12.0889 6.0679 1.4485 20 1 10.8913 6.8522 1.8434 21 1 12.9290 5.8101 2.6456 22 1 12.8743 6.8346 0.4484 23 6 5.5841 0.2315 -0.0005 24 7 4.2677 0.1624 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.5898 3.4278 -0.0015 29 1 7.7830 3.5675 -0.0027 30 1 9.9759 1.7825 -1.8741 31 1 9.8832 3.5532 -2.0292 32 1 11.3786 2.7889 -1.4398 33 1 13.3951 3.7918 0.3562 34 1 6.1722 -0.6743 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355144738.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:58 Heat of formation + Delta-G solvation = -67.240205 kcal Electronic energy + Delta-G solvation = -20620.446224 eV Core-core repulsion = 17133.227212 eV Total energy + Delta-G solvation = -3487.219012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.69730 -40.42314 -38.77852 -36.88545 -35.07952 -34.76719 -32.48941 -32.11954 -29.22760 -28.26679 -26.15173 -25.31638 -24.80450 -22.49781 -21.45868 -19.85399 -18.78121 -18.36468 -17.80206 -17.09394 -16.85089 -16.08152 -15.41723 -15.27661 -15.22873 -14.91526 -14.28333 -14.07679 -13.66504 -13.45322 -13.08510 -12.50040 -12.46956 -12.04604 -11.82763 -11.59624 -11.28059 -11.17879 -11.15897 -11.02221 -10.85305 -10.39034 -10.29502 -9.97114 -9.76999 -9.27958 -9.11113 -8.62835 -8.09360 -6.17956 -4.27349 -0.29532 0.71461 1.86561 2.09712 2.97252 3.21915 3.29315 3.31934 3.39145 3.62409 3.73732 3.88402 4.12142 4.32930 4.46459 4.74074 4.76148 4.83141 5.12807 5.15475 5.17826 5.30785 5.81112 5.91175 6.65880 6.73080 6.86331 7.03389 7.10957 7.25051 7.32572 7.45447 7.62777 7.81115 8.05671 8.45655 8.63688 8.88069 9.39860 10.88177 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037231 B = 0.003291 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.874926 B = 8507.261896 C = 9052.608418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.333 6.333 3 C 0.532 3.468 4 O -0.491 6.491 5 C 0.042 3.958 6 C 0.119 3.881 7 N -0.411 5.411 8 C 0.084 3.916 9 C 0.551 3.449 10 O -0.535 6.535 11 N -0.675 5.675 12 C 0.261 3.739 13 H 0.054 0.946 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.064 0.936 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.100 3.900 24 N -0.389 5.389 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.190 0.810 29 H 0.401 0.599 30 H 0.016 0.984 31 H 0.029 0.971 32 H 0.094 0.906 33 H 0.265 0.735 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.618 -4.784 -1.217 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.248 6.248 3 C 0.373 3.627 4 O -0.378 6.378 5 C -0.098 4.098 6 C -0.043 4.043 7 N -0.128 5.128 8 C -0.060 4.060 9 C 0.332 3.668 10 O -0.412 6.412 11 N -0.322 5.322 12 C 0.160 3.840 13 H 0.072 0.928 14 C -0.207 4.207 15 C -0.573 4.573 16 H 0.082 0.918 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.064 4.064 24 N -0.106 5.106 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.207 0.793 29 H 0.236 0.764 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -19.138 -5.203 -1.230 19.871 hybrid contribution -0.184 1.305 0.360 1.366 sum -19.322 -3.898 -0.870 19.731 Atomic orbital electron populations 1.23397 0.75611 1.04212 1.02795 1.86677 1.23551 1.31396 1.83148 1.20528 0.87205 0.82039 0.72893 1.90874 1.65588 1.36051 1.45291 1.21254 0.92258 0.91987 1.04332 1.23878 0.90737 0.97916 0.91722 1.68703 1.06038 1.30269 1.07820 1.23235 0.97632 0.90694 0.94394 1.17636 0.83930 0.85632 0.79592 1.90786 1.64156 1.34698 1.51592 1.46552 1.10885 1.06499 1.68220 1.18943 0.72191 0.98456 0.94460 0.92842 1.22095 1.04726 0.96900 0.96962 1.21230 0.92394 1.02179 1.41539 0.91767 1.24880 0.96313 0.97371 0.95077 1.69899 1.01284 1.35071 1.45782 0.86357 0.78720 0.82987 0.78851 1.19641 1.20837 1.20824 1.23980 0.89636 0.99411 0.93324 1.68565 1.06942 1.29495 1.05584 0.91545 0.91558 0.87607 0.79305 0.76420 0.96458 0.95201 0.88795 0.92518 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.33 -3.53 10.39 -40.39 -0.42 -3.95 16 3 C 0.53 6.21 7.96 34.83 0.28 6.49 16 4 O -0.49 -6.15 16.13 -19.20 -0.31 -6.46 16 5 C 0.04 0.52 6.76 -82.74 -0.56 -0.04 16 6 C 0.12 1.42 10.77 -17.02 -0.18 1.24 16 7 N -0.41 -5.89 9.70 -9.28 -0.09 -5.98 16 8 C 0.08 1.30 6.76 -82.72 -0.56 0.74 16 9 C 0.55 10.68 7.79 -12.11 -0.09 10.59 16 10 O -0.53 -11.74 16.00 5.37 0.09 -11.65 16 11 N -0.67 -13.96 5.06 -55.73 -0.28 -14.24 16 12 C 0.26 6.44 2.56 -69.09 -0.18 6.26 16 13 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 14 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 15 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -24.28 11.32 55.43 0.63 -23.65 16 19 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.10 1.36 10.77 -17.04 -0.18 1.17 16 24 N -0.39 -5.15 10.27 -9.31 -0.10 -5.24 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.19 1.78 7.64 -52.49 -0.40 1.38 16 29 H 0.40 7.60 7.89 -40.82 -0.32 7.28 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.20 2.38 7.64 -52.49 -0.40 1.98 16 LS Contribution 310.52 15.07 4.68 4.68 Total: -1.00 -30.10 310.52 -4.77 -34.87 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.49 Total: 4.32 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -0.46 Total: 11.98 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.16 Total: -49.12 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.64 Total: -22.06 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.10 -4.77 -34.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355144738.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.368 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds