Wall clock time and date at job start Tue Mar 31 2020 00:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34661 * 117.00305 * 2 1 4 4 O 1.21413 * 119.99894 * 359.97438 * 3 2 1 5 5 C 1.48219 * 120.00162 * 180.02562 * 3 2 1 6 6 C 1.39698 * 120.00588 * 179.97438 * 5 3 2 7 7 N 1.31808 * 119.99794 * 180.02562 * 6 5 3 8 8 C 1.32944 * 119.99654 * 359.97438 * 7 6 5 9 9 C 1.48318 * 119.99271 * 180.02562 * 8 7 6 10 10 O 1.21493 * 119.99934 * 179.97438 * 9 8 7 11 11 N 1.34782 * 120.00180 * 0.02562 * 9 8 7 12 12 C 1.46493 * 120.00011 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47450 * 325.00268 * 12 11 9 14 14 C 1.53003 * 109.47141 * 85.00005 * 12 11 9 15 15 C 1.50696 * 109.47147 * 204.99697 * 12 11 9 16 16 H 1.08003 * 120.00247 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00407 * 180.02562 * 15 12 11 18 18 N 1.31510 * 119.99911 * 359.97438 * 17 15 12 19 19 Si 1.86795 * 120.00367 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47132 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47356 * 119.99469 * 19 17 15 22 22 H 1.48494 * 109.47465 * 239.99953 * 19 17 15 23 23 C 1.39636 * 120.01037 * 359.97438 * 8 7 6 24 24 N 1.31815 * 120.00500 * 0.02562 * 23 8 7 25 25 H 1.09001 * 109.46706 * 300.00291 * 1 2 3 26 26 H 1.09003 * 109.47147 * 60.00088 * 1 2 3 27 27 H 1.08994 * 109.47531 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00018 * 359.97438 * 6 5 3 29 29 H 0.97000 * 119.99925 * 359.97438 * 11 9 8 30 30 H 1.08996 * 109.47427 * 299.99937 * 14 12 11 31 31 H 1.09001 * 109.47157 * 59.99693 * 14 12 11 32 32 H 1.09000 * 109.47216 * 179.97438 * 14 12 11 33 33 H 0.96999 * 120.00545 * 180.02562 * 18 17 15 34 34 H 1.08001 * 119.99938 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1998 0.0000 4 8 1.4022 2.2181 -0.0005 5 6 3.5436 1.2773 -0.0006 6 6 4.1779 2.5220 -0.0011 7 7 5.4942 2.5908 -0.0021 8 6 6.2180 1.4756 -0.0021 9 6 7.6992 1.5531 -0.0027 10 8 8.3608 0.5341 -0.0022 11 7 8.3113 2.7539 -0.0027 12 6 9.7742 2.8304 -0.0027 13 1 10.1810 2.0088 0.5867 14 6 10.2901 2.7315 -1.4397 15 6 10.2086 4.1426 0.5977 16 1 9.4689 4.8488 0.9449 17 6 11.5504 4.4417 0.7037 18 7 12.4512 3.5817 0.2813 19 14 12.0889 6.0679 1.4485 20 1 10.8913 6.8522 1.8434 21 1 12.9290 5.8101 2.6456 22 1 12.8743 6.8346 0.4484 23 6 5.5841 0.2315 -0.0005 24 7 4.2677 0.1624 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.5898 3.4278 -0.0015 29 1 7.7830 3.5675 -0.0027 30 1 9.9759 1.7825 -1.8741 31 1 9.8832 3.5532 -2.0292 32 1 11.3786 2.7889 -1.4398 33 1 13.3951 3.7918 0.3562 34 1 6.1722 -0.6743 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355144738.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:58 Heat of formation + Delta-G solvation = -88.860947 kcal Electronic energy + Delta-G solvation = -20621.383770 eV Core-core repulsion = 17133.227212 eV Total energy + Delta-G solvation = -3488.156558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.77145 -41.37769 -40.31854 -37.73325 -36.85983 -35.94592 -34.31827 -33.28420 -30.97440 -29.07279 -27.38067 -27.17539 -25.86514 -23.81836 -22.75973 -21.52673 -19.94087 -19.67995 -18.90959 -18.02498 -17.87853 -17.69037 -17.08084 -16.56000 -16.47085 -16.19361 -15.64555 -15.39884 -14.92023 -14.46102 -14.35862 -14.27771 -13.73959 -13.14888 -13.05660 -13.01343 -12.91234 -12.77039 -12.67578 -12.28838 -12.18490 -12.13461 -11.87712 -11.43831 -11.12069 -10.86714 -10.62657 -10.51556 -9.87986 -8.18493 -6.35413 -1.39424 -0.32747 0.85386 1.26024 1.45299 1.46900 1.58549 1.69660 2.00793 2.42271 2.48688 2.60974 2.76666 3.00033 3.12570 3.56429 3.71180 3.77342 4.26604 4.32425 4.35665 4.71790 4.73445 4.84563 4.91862 5.04513 5.05785 5.36676 5.51295 5.60785 5.65546 5.83416 6.06922 6.11322 6.42496 6.69260 6.75734 7.18591 7.38393 8.87988 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.037231 B = 0.003291 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.874926 B = 8507.261896 C = 9052.608418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.343 6.343 3 C 0.536 3.464 4 O -0.499 6.499 5 C 0.052 3.948 6 C 0.126 3.874 7 N -0.418 5.418 8 C 0.069 3.931 9 C 0.555 3.445 10 O -0.566 6.566 11 N -0.677 5.677 12 C 0.267 3.733 13 H 0.012 0.988 14 C -0.136 4.136 15 C -0.548 4.548 16 H 0.071 0.929 17 C 0.018 3.982 18 N -0.914 5.914 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.278 1.278 23 C 0.108 3.892 24 N -0.392 5.392 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.218 0.782 29 H 0.411 0.589 30 H 0.019 0.981 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.267 0.733 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.865 -3.952 -1.038 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.257 6.257 3 C 0.378 3.622 4 O -0.387 6.387 5 C -0.089 4.089 6 C -0.036 4.036 7 N -0.135 5.135 8 C -0.073 4.073 9 C 0.338 3.662 10 O -0.445 6.445 11 N -0.325 5.325 12 C 0.165 3.835 13 H 0.030 0.970 14 C -0.195 4.195 15 C -0.587 4.587 16 H 0.089 0.911 17 C -0.183 4.183 18 N -0.552 5.552 19 Si 0.796 3.204 20 H -0.186 1.186 21 H -0.209 1.209 22 H -0.204 1.204 23 C -0.053 4.053 24 N -0.109 5.109 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.235 0.765 29 H 0.247 0.753 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -21.414 -4.384 -1.054 21.884 hybrid contribution 0.322 0.967 0.302 1.063 sum -21.092 -3.418 -0.752 21.381 Atomic orbital electron populations 1.23751 0.73311 1.06290 1.03343 1.86661 1.25799 1.30641 1.82616 1.20320 0.86731 0.82358 0.72822 1.90875 1.65623 1.36402 1.45769 1.21559 0.92969 0.91946 1.02473 1.24274 0.89774 0.98886 0.90629 1.68618 1.07152 1.29883 1.07833 1.22540 0.95258 0.91971 0.97549 1.18021 0.85653 0.84526 0.78015 1.90760 1.65655 1.35535 1.52590 1.46277 1.09393 1.07609 1.69200 1.18550 0.74462 0.96614 0.93902 0.97047 1.21922 1.03216 0.97365 0.96968 1.21531 0.92875 1.02610 1.41641 0.91059 1.25739 0.96401 1.00710 0.95405 1.70030 1.01599 1.36904 1.46713 0.85305 0.78395 0.78859 0.77841 1.18602 1.20866 1.20376 1.24036 0.89849 0.98973 0.92479 1.68640 1.06481 1.29917 1.05835 0.91018 0.90998 0.84885 0.76525 0.75318 0.96228 0.94157 0.91016 0.92406 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.34 -6.42 10.39 -55.70 -0.58 -7.00 16 3 C 0.54 11.22 7.96 70.48 0.56 11.78 16 4 O -0.50 -11.20 16.13 20.12 0.32 -10.87 16 5 C 0.05 1.17 6.76 41.98 0.28 1.46 16 6 C 0.13 2.73 10.77 85.05 0.92 3.64 16 7 N -0.42 -11.35 9.70 -183.29 -1.78 -13.12 16 8 C 0.07 2.10 6.76 42.00 0.28 2.38 16 9 C 0.55 21.77 7.79 86.93 0.68 22.45 16 10 O -0.57 -25.53 16.00 -3.69 -0.06 -25.59 16 11 N -0.68 -28.32 5.06 -448.54 -2.27 -30.59 16 12 C 0.27 13.56 2.56 44.25 0.11 13.67 16 13 H 0.01 0.68 7.58 -2.39 -0.02 0.66 16 14 C -0.14 -6.70 9.26 71.98 0.67 -6.03 16 15 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 17 C 0.02 0.95 5.30 84.66 0.45 1.39 16 18 N -0.91 -51.20 11.32 21.45 0.24 -50.96 16 19 Si 0.97 41.52 29.54 68.60 2.03 43.54 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 23 C 0.11 2.85 10.77 85.03 0.92 3.77 16 24 N -0.39 -9.69 10.27 -183.38 -1.88 -11.57 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.22 3.41 7.64 -2.91 -0.02 3.38 16 29 H 0.41 15.45 7.89 -92.71 -0.73 14.72 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 33 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.20 4.88 7.64 -2.91 -0.02 4.86 16 Total: -1.00 -64.65 310.52 2.73 -61.91 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.42 Total: 16.74 kcal Atomic # 6 Polarization: 21.23 SS G_CDS: 6.29 Total: 27.52 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.69 Total: -106.25 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.31 Total: -43.46 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -64.65 2.73 -61.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355144738.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.946 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds