Wall clock time and date at job start Tue Mar 31 2020 00:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35944 * 117.00102 * 2 1 4 4 C 1.38300 * 120.03974 * 359.73553 * 3 2 1 5 5 C 1.39116 * 119.93777 * 179.72233 * 4 3 2 6 6 N 1.39328 * 119.99211 * 180.27214 * 5 4 3 7 7 C 1.34778 * 120.00198 * 35.35592 * 6 5 4 8 8 O 1.21805 * 119.99570 * 355.28333 * 7 6 5 9 9 C 1.41617 * 120.00169 * 175.27639 * 7 6 5 10 10 H 1.08000 * 119.99912 * 0.02562 * 9 7 6 11 11 C 1.40135 * 119.99790 * 179.97438 * 9 7 6 12 12 N 1.30627 * 120.00652 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99962 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47054 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47218 * 119.99917 * 13 11 9 16 16 H 1.48502 * 109.47311 * 240.00283 * 13 11 9 17 17 C 1.39254 * 120.01494 * 0.54362 * 5 4 3 18 18 C 1.37955 * 120.07936 * 359.73228 * 17 5 4 19 19 C 1.38930 * 120.06389 * 359.97438 * 18 17 5 20 20 N 1.39965 * 120.00782 * 179.97438 * 19 18 17 21 21 C 1.34773 * 120.00437 * 24.80147 * 20 19 18 22 22 N 1.34779 * 120.00293 * 185.65665 * 21 20 19 23 23 O 1.21596 * 119.99566 * 5.65955 * 21 20 19 24 24 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47423 * 59.99150 * 1 2 3 26 26 H 1.09000 * 109.46608 * 299.99753 * 1 2 3 27 27 H 1.08001 * 120.03329 * 359.97083 * 4 3 2 28 28 H 0.96995 * 120.00283 * 215.34957 * 6 5 4 29 29 H 0.96994 * 120.00829 * 179.97438 * 12 11 9 30 30 H 1.07997 * 119.96201 * 179.70758 * 17 5 4 31 31 H 1.08003 * 119.96735 * 179.97438 * 18 17 5 32 32 H 0.97005 * 120.00042 * 204.81010 * 20 19 18 33 33 H 0.96998 * 120.00010 * 0.02562 * 22 21 20 34 34 H 0.96998 * 119.99733 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3717 -0.0055 5 6 1.9276 3.6101 0.0003 6 7 1.1706 4.7798 0.0005 7 6 0.0027 4.8267 0.6714 8 8 -0.4334 3.8226 1.2056 9 6 -0.7174 6.0432 0.7554 10 1 -0.3308 6.9333 0.2815 11 6 -1.9321 6.0917 1.4526 12 7 -2.4000 5.0150 2.0254 13 14 -2.8823 7.6962 1.5628 14 1 -2.1443 8.7595 0.8350 15 1 -4.2246 7.5195 0.9526 16 1 -3.0337 8.0849 2.9880 17 6 3.3183 3.6809 0.0003 18 6 4.0695 2.5238 0.0000 19 6 3.4400 1.2853 0.0004 20 7 4.2033 0.1121 -0.0004 21 6 5.4593 0.1249 0.4881 22 7 6.2342 -0.9730 0.3841 23 8 5.8934 1.1270 1.0229 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3632 0.5138 0.8900 27 1 0.2152 2.3165 -0.0103 28 1 1.4843 5.5605 -0.4821 29 1 -3.2405 5.0486 2.5082 30 1 3.8094 4.6427 0.0001 31 1 5.1480 2.5808 -0.0004 32 1 3.8284 -0.7103 -0.3528 33 1 5.8880 -1.7722 -0.0428 34 1 7.1380 -0.9638 0.7361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357348050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:34 Heat of formation + Delta-G solvation = -70.211623 kcal Electronic energy + Delta-G solvation = -21389.269141 eV Core-core repulsion = 17901.921278 eV Total energy + Delta-G solvation = -3487.347863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49773 -39.23351 -38.03994 -36.40469 -34.56508 -33.78775 -32.75193 -32.06600 -29.55771 -28.42536 -26.95021 -25.97121 -22.87080 -21.71953 -20.93173 -19.93318 -18.33606 -17.97453 -17.68884 -16.90923 -15.85669 -15.80924 -15.35924 -15.23856 -14.97641 -14.80145 -14.27523 -14.06442 -13.38073 -13.19184 -12.77946 -12.50808 -12.27580 -12.04836 -11.33573 -11.21077 -11.11447 -11.00061 -10.69540 -10.57069 -10.32981 -10.24618 -10.00278 -9.69714 -9.05099 -8.45934 -7.92509 -7.58531 -6.72336 -6.38502 -4.91319 1.94129 2.08106 2.92331 3.02996 3.12219 3.16694 3.26531 3.65843 3.97410 4.28487 4.45677 4.54176 4.72614 5.45017 5.57937 5.63729 5.66137 5.79852 5.90405 5.99725 6.07961 6.28246 6.46821 6.65601 6.76922 6.98070 7.00720 7.18457 7.21857 7.27424 7.77979 7.87965 7.97357 8.04634 8.24474 8.63270 8.79319 9.29914 10.36911 10.57877 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.004187 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.801337 B = 6686.121688 C = 7320.641964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.328 6.328 3 C 0.114 3.886 4 C -0.199 4.199 5 C 0.213 3.787 6 N -0.700 5.700 7 C 0.544 3.456 8 O -0.569 6.569 9 C -0.538 4.538 10 H 0.071 0.929 11 C 0.088 3.912 12 N -0.748 5.748 13 Si 0.912 3.088 14 H -0.262 1.262 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.191 4.191 18 C -0.073 4.073 19 C 0.082 3.918 20 N -0.667 5.667 21 C 0.701 3.299 22 N -0.868 5.868 23 O -0.581 6.581 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.156 0.844 28 H 0.393 0.607 29 H 0.272 0.728 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.406 0.594 33 H 0.396 0.604 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.337 -9.973 -6.374 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.242 6.242 3 C 0.066 3.934 4 C -0.221 4.221 5 C 0.113 3.887 6 N -0.343 5.343 7 C 0.353 3.647 8 O -0.452 6.452 9 C -0.573 4.573 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.375 5.375 13 Si 0.736 3.264 14 H -0.185 1.185 15 H -0.200 1.200 16 H -0.199 1.199 17 C -0.213 4.213 18 C -0.094 4.094 19 C -0.013 4.013 20 N -0.314 5.314 21 C 0.400 3.600 22 N -0.436 5.436 23 O -0.458 6.458 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.173 0.827 28 H 0.226 0.774 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.164 0.836 32 H 0.240 0.760 33 H 0.223 0.777 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.109 -9.990 -5.430 14.569 hybrid contribution -0.554 0.500 -0.277 0.796 sum 8.555 -9.490 -5.707 13.994 Atomic orbital electron populations 1.22996 0.77968 1.02769 1.02623 1.85844 1.21792 1.27006 1.89596 1.18498 0.89651 0.84842 1.00371 1.21385 1.01802 0.89942 1.08994 1.17748 0.89879 0.87570 0.93496 1.44097 1.24145 1.11698 1.54383 1.17030 0.78564 0.90593 0.78486 1.90620 1.67725 1.36847 1.50044 1.20060 1.06003 0.95930 1.35293 0.91100 1.25757 0.97071 0.97385 0.93237 1.70011 1.16864 1.28188 1.22478 0.86234 0.79466 0.81941 0.78710 1.18536 1.19960 1.19932 1.20779 0.92035 0.98303 1.10225 1.20874 1.00744 0.89289 0.98519 1.16641 0.86084 0.85879 1.12745 1.42147 1.12948 1.12054 1.64291 1.15956 0.81126 0.83846 0.79046 1.42963 1.18307 1.15061 1.67259 1.90936 1.73726 1.32290 1.48886 0.89041 0.92796 0.91628 0.82673 0.77356 0.91742 0.86076 0.83574 0.75986 0.77651 0.75364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.33 -5.51 9.91 -19.56 -0.19 -5.70 16 3 C 0.11 2.18 6.70 -39.06 -0.26 1.92 16 4 C -0.20 -4.35 7.67 -39.23 -0.30 -4.65 16 5 C 0.21 4.64 6.29 -83.75 -0.53 4.12 16 6 N -0.70 -15.97 5.30 -12.44 -0.07 -16.03 16 7 C 0.54 15.02 7.40 -14.97 -0.11 14.91 16 8 O -0.57 -17.43 12.30 5.09 0.06 -17.36 16 9 C -0.54 -14.55 9.31 -37.58 -0.35 -14.89 16 10 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 11 C 0.09 2.35 5.50 -17.35 -0.10 2.25 16 12 N -0.75 -21.28 11.73 55.55 0.65 -20.63 16 13 Si 0.91 19.22 29.56 -169.99 -5.02 14.19 16 14 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 C -0.19 -3.65 9.96 -39.31 -0.39 -4.04 16 18 C -0.07 -1.36 8.71 -39.43 -0.34 -1.70 16 19 C 0.08 1.47 6.46 -83.39 -0.54 0.93 16 20 N -0.67 -9.45 5.29 -14.03 -0.07 -9.53 16 21 C 0.70 9.86 8.64 -86.92 -0.75 9.11 16 22 N -0.87 -7.26 8.88 27.64 0.25 -7.01 16 23 O -0.58 -10.64 14.34 5.28 0.08 -10.57 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.80 7.65 -51.93 -0.40 0.41 16 26 H 0.07 1.14 7.67 -51.93 -0.40 0.75 16 27 H 0.16 3.72 4.46 -52.49 -0.23 3.49 16 28 H 0.39 7.66 8.78 -40.82 -0.36 7.31 16 29 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 30 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.15 2.66 5.78 -52.48 -0.30 2.36 16 32 H 0.41 4.55 8.36 -40.82 -0.34 4.21 16 33 H 0.40 2.01 8.85 -40.82 -0.36 1.65 16 34 H 0.41 2.89 8.93 -40.82 -0.36 2.53 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -35.66 297.87 -5.66 -41.32 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -3.15 Total: 17.41 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -2.68 Total: 9.42 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.76 Total: -53.20 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.06 Total: -33.64 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.66 -5.66 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357348050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.892 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds