Wall clock time and date at job start Tue Mar 31 2020 00:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35944 * 117.00102 * 2 1 4 4 C 1.38300 * 120.03974 * 359.73553 * 3 2 1 5 5 C 1.39116 * 119.93777 * 179.72233 * 4 3 2 6 6 N 1.39328 * 119.99211 * 180.27214 * 5 4 3 7 7 C 1.34778 * 120.00198 * 35.35592 * 6 5 4 8 8 O 1.21805 * 119.99570 * 355.28333 * 7 6 5 9 9 C 1.41617 * 120.00169 * 175.27639 * 7 6 5 10 10 H 1.08000 * 119.99912 * 0.02562 * 9 7 6 11 11 C 1.40135 * 119.99790 * 179.97438 * 9 7 6 12 12 N 1.30627 * 120.00652 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99962 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47054 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47218 * 119.99917 * 13 11 9 16 16 H 1.48502 * 109.47311 * 240.00283 * 13 11 9 17 17 C 1.39254 * 120.01494 * 0.54362 * 5 4 3 18 18 C 1.37955 * 120.07936 * 359.73228 * 17 5 4 19 19 C 1.38930 * 120.06389 * 359.97438 * 18 17 5 20 20 N 1.39965 * 120.00782 * 179.97438 * 19 18 17 21 21 C 1.34773 * 120.00437 * 24.80147 * 20 19 18 22 22 N 1.34779 * 120.00293 * 185.65665 * 21 20 19 23 23 O 1.21596 * 119.99566 * 5.65955 * 21 20 19 24 24 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47423 * 59.99150 * 1 2 3 26 26 H 1.09000 * 109.46608 * 299.99753 * 1 2 3 27 27 H 1.08001 * 120.03329 * 359.97083 * 4 3 2 28 28 H 0.96995 * 120.00283 * 215.34957 * 6 5 4 29 29 H 0.96994 * 120.00829 * 179.97438 * 12 11 9 30 30 H 1.07997 * 119.96201 * 179.70758 * 17 5 4 31 31 H 1.08003 * 119.96735 * 179.97438 * 18 17 5 32 32 H 0.97005 * 120.00042 * 204.81010 * 20 19 18 33 33 H 0.96998 * 120.00010 * 0.02562 * 22 21 20 34 34 H 0.96998 * 119.99733 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3717 -0.0055 5 6 1.9276 3.6101 0.0003 6 7 1.1706 4.7798 0.0005 7 6 0.0027 4.8267 0.6714 8 8 -0.4334 3.8226 1.2056 9 6 -0.7174 6.0432 0.7554 10 1 -0.3308 6.9333 0.2815 11 6 -1.9321 6.0917 1.4526 12 7 -2.4000 5.0150 2.0254 13 14 -2.8823 7.6962 1.5628 14 1 -2.1443 8.7595 0.8350 15 1 -4.2246 7.5195 0.9526 16 1 -3.0337 8.0849 2.9880 17 6 3.3183 3.6809 0.0003 18 6 4.0695 2.5238 0.0000 19 6 3.4400 1.2853 0.0004 20 7 4.2033 0.1121 -0.0004 21 6 5.4593 0.1249 0.4881 22 7 6.2342 -0.9730 0.3841 23 8 5.8934 1.1270 1.0229 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3632 0.5138 0.8900 27 1 0.2152 2.3165 -0.0103 28 1 1.4843 5.5605 -0.4821 29 1 -3.2405 5.0486 2.5082 30 1 3.8094 4.6427 0.0001 31 1 5.1480 2.5808 -0.0004 32 1 3.8284 -0.7103 -0.3528 33 1 5.8880 -1.7722 -0.0428 34 1 7.1380 -0.9638 0.7361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357348050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:33 Heat of formation + Delta-G solvation = -100.453763 kcal Electronic energy + Delta-G solvation = -21390.580539 eV Core-core repulsion = 17901.921278 eV Total energy + Delta-G solvation = -3488.659260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84681 -40.64589 -39.75088 -37.99286 -36.05972 -35.03340 -34.57190 -33.74374 -31.08922 -30.03952 -28.59987 -27.58897 -24.35671 -23.23971 -22.38171 -21.58440 -19.71993 -19.45315 -18.99566 -18.51599 -17.66955 -16.98516 -16.86046 -16.73941 -16.43076 -16.11656 -15.83819 -15.42087 -15.06496 -14.76465 -14.60594 -14.15206 -13.75442 -13.63650 -13.13423 -12.84406 -12.73018 -12.62418 -12.39994 -12.07663 -11.98688 -11.72762 -11.29923 -10.98939 -10.66634 -10.12910 -9.85602 -9.32894 -8.39995 -8.28393 -7.00829 0.39778 0.52157 1.38718 1.40448 1.58243 1.82281 2.07205 2.21374 2.28331 2.39189 2.90727 3.01229 3.54960 3.64824 4.02474 4.24333 4.32647 4.35303 4.45860 4.59069 4.72100 4.85407 4.98809 5.21990 5.26849 5.47203 5.56462 5.79074 5.89534 5.91091 6.01367 6.18430 6.23518 6.50852 6.74384 7.01821 7.41235 7.59422 8.38709 8.56902 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.004187 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.801337 B = 6686.121688 C = 7320.641964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.319 6.319 3 C 0.110 3.890 4 C -0.217 4.217 5 C 0.180 3.820 6 N -0.693 5.693 7 C 0.529 3.471 8 O -0.611 6.611 9 C -0.564 4.564 10 H 0.090 0.910 11 C 0.033 3.967 12 N -0.799 5.799 13 Si 1.001 2.999 14 H -0.247 1.247 15 H -0.266 1.266 16 H -0.269 1.269 17 C -0.180 4.180 18 C -0.077 4.077 19 C 0.094 3.906 20 N -0.659 5.659 21 C 0.698 3.302 22 N -0.837 5.837 23 O -0.624 6.624 24 H 0.137 0.863 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.127 0.873 28 H 0.407 0.593 29 H 0.279 0.721 30 H 0.144 0.856 31 H 0.156 0.844 32 H 0.421 0.579 33 H 0.416 0.584 34 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.502 -10.236 -7.008 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.233 6.233 3 C 0.062 3.938 4 C -0.239 4.239 5 C 0.081 3.919 6 N -0.338 5.338 7 C 0.338 3.662 8 O -0.498 6.498 9 C -0.599 4.599 10 H 0.108 0.892 11 C -0.185 4.185 12 N -0.427 5.427 13 Si 0.820 3.180 14 H -0.170 1.170 15 H -0.191 1.191 16 H -0.194 1.194 17 C -0.202 4.202 18 C -0.097 4.097 19 C -0.003 4.003 20 N -0.308 5.308 21 C 0.397 3.603 22 N -0.407 5.407 23 O -0.505 6.505 24 H 0.155 0.845 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.144 0.856 28 H 0.243 0.757 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.173 0.827 32 H 0.259 0.741 33 H 0.247 0.753 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 10.348 -10.338 -6.117 15.854 hybrid contribution -0.792 0.385 -0.112 0.887 sum 9.556 -9.953 -6.229 15.139 Atomic orbital electron populations 1.23128 0.77022 1.05102 1.00924 1.85847 1.22562 1.25618 1.89253 1.18493 0.90247 0.84766 1.00327 1.21254 1.00771 0.91423 1.10495 1.17971 0.90934 0.87069 0.95907 1.43663 1.23183 1.12774 1.54140 1.17399 0.79709 0.90475 0.78571 1.90585 1.69259 1.38081 1.51917 1.20576 1.06885 0.96454 1.35982 0.89178 1.26991 0.97845 1.01661 0.92017 1.70155 1.17782 1.31283 1.23523 0.84922 0.77710 0.76436 0.78962 1.16951 1.19063 1.19364 1.20958 0.90776 0.99751 1.08742 1.21052 1.01076 0.89308 0.98308 1.16711 0.85935 0.87220 1.10392 1.42029 1.12954 1.11513 1.64322 1.16139 0.81039 0.84488 0.78626 1.42677 1.18016 1.14113 1.65854 1.90911 1.74449 1.34367 1.50783 0.84517 0.93127 0.94820 0.85565 0.75744 0.91112 0.83856 0.82700 0.74124 0.75277 0.74045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 9.81 113.37 1.11 2.11 16 2 O -0.32 -10.55 9.91 -92.92 -0.92 -11.47 16 3 C 0.11 4.23 6.70 22.61 0.15 4.38 16 4 C -0.22 -9.89 7.67 22.50 0.17 -9.72 16 5 C 0.18 8.05 6.29 38.41 0.24 8.29 16 6 N -0.69 -32.60 5.30 -311.45 -1.65 -34.25 16 7 C 0.53 30.39 7.40 85.08 0.63 31.02 16 8 O -0.61 -39.57 12.30 -4.68 -0.06 -39.62 16 9 C -0.56 -31.09 9.31 23.57 0.22 -30.87 16 10 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 11 C 0.03 1.78 5.50 85.33 0.47 2.25 16 12 N -0.80 -46.98 11.73 21.85 0.26 -46.72 16 13 Si 1.00 39.37 29.56 68.60 2.03 41.40 16 14 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 15 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 17 C -0.18 -6.83 9.96 22.45 0.22 -6.61 16 18 C -0.08 -2.76 8.71 22.37 0.19 -2.57 16 19 C 0.09 3.29 6.46 38.33 0.25 3.54 16 20 N -0.66 -17.27 5.29 -316.56 -1.67 -18.94 16 21 C 0.70 17.97 8.64 179.05 1.55 19.52 16 22 N -0.84 -11.27 8.88 -184.74 -1.64 -12.91 16 23 O -0.62 -21.85 14.34 -4.02 -0.06 -21.90 16 24 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 25 H 0.05 1.57 7.65 -2.39 -0.02 1.55 16 26 H 0.03 1.24 7.67 -2.39 -0.02 1.22 16 27 H 0.13 6.50 4.46 -2.91 -0.01 6.49 16 28 H 0.41 16.13 8.78 -92.71 -0.81 15.32 16 29 H 0.28 14.71 8.29 -92.71 -0.77 13.94 16 30 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.16 5.42 5.78 -2.91 -0.02 5.40 16 32 H 0.42 8.29 8.36 -92.70 -0.77 7.51 16 33 H 0.42 2.62 8.85 -92.71 -0.82 1.80 16 34 H 0.43 4.54 8.93 -92.71 -0.83 3.71 16 Total: -1.00 -80.85 297.87 -0.52 -81.38 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -2.02 Total: 41.70 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 5.21 Total: 21.35 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -4.71 Total: -112.82 kcal Atomic # 8 Polarization: -71.96 SS G_CDS: -1.04 Total: -73.00 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -80.85 -0.52 -81.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357348050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.078 kcal (2) G-P(sol) polarization free energy of solvation -80.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds