Wall clock time and date at job start Tue Mar 31 2020 00:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35725 * 116.99863 * 2 1 4 4 C 1.39225 * 120.37886 * 180.02562 * 3 2 1 5 5 C 1.38325 * 118.44611 * 180.02562 * 4 3 2 6 6 C 1.39471 * 119.13077 * 0.02562 * 5 4 3 7 7 C 1.47923 * 119.65795 * 179.97438 * 6 5 4 8 8 O 1.21550 * 119.99675 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00343 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00489 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47549 * 180.02562 * 10 9 7 12 12 O 1.21299 * 119.99858 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00140 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99760 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00575 * 0.02562 * 14 13 11 16 16 C 1.38950 * 119.99962 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00040 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00174 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47199 * 60.00665 * 18 16 14 20 20 H 1.48503 * 109.47335 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47598 * 300.00840 * 18 16 14 22 22 N 1.32796 * 120.68234 * 359.97438 * 6 5 4 23 23 C 1.31377 * 121.69861 * 0.04599 * 22 6 5 24 24 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46831 * 299.99985 * 1 2 3 26 26 H 1.08999 * 109.47566 * 59.99047 * 1 2 3 27 27 H 1.08001 * 120.77935 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.43337 * 179.72950 * 5 4 3 29 29 H 0.97008 * 119.99645 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.47556 * 300.00350 * 10 9 7 31 31 H 1.09005 * 109.47050 * 60.00367 * 10 9 7 32 32 H 0.97003 * 120.00411 * 0.02562 * 13 11 10 33 33 H 0.97006 * 120.00447 * 179.97438 * 17 16 14 34 34 H 1.08000 * 119.59745 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4350 1.2914 -0.0005 5 6 4.0210 2.5444 0.0000 6 6 3.2051 3.6755 0.0017 7 6 3.8195 5.0212 0.0028 8 8 5.0294 5.1368 0.0019 9 7 3.0376 6.1190 0.0039 10 6 3.6460 7.4516 0.0056 11 6 2.5622 8.4987 0.0072 12 8 1.3961 8.1646 0.0073 13 7 2.8885 9.8063 0.0084 14 6 1.9024 10.7588 0.0093 15 1 0.8642 10.4614 0.0094 16 6 2.2388 12.1070 0.0111 17 7 3.5021 12.4690 0.0114 18 14 0.8954 13.4048 0.0115 19 1 0.0521 13.2440 1.2233 20 1 1.5121 14.7558 0.0129 21 1 0.0537 13.2467 -1.2016 22 7 1.8825 3.5570 0.0021 23 6 1.2947 2.3821 0.0020 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 4.0414 0.3977 -0.0014 28 1 5.0963 2.6454 0.0040 29 1 2.0720 6.0266 0.0042 30 1 4.2641 7.5677 0.8959 31 1 4.2646 7.5698 -0.8841 32 1 3.8210 10.0736 0.0079 33 1 3.7370 13.4102 0.0123 34 1 0.2162 2.3252 0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360621584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:30 Heat of formation + Delta-G solvation = -71.849380 kcal Electronic energy + Delta-G solvation = -20303.726712 eV Core-core repulsion = 16816.307831 eV Total energy + Delta-G solvation = -3487.418881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06045 -39.53901 -38.37981 -37.75816 -34.48491 -33.71984 -32.69587 -31.37571 -30.96656 -28.24261 -27.46885 -24.88419 -24.06900 -23.19031 -20.61780 -19.59878 -18.66910 -18.21657 -17.77527 -17.32867 -16.31457 -15.79529 -15.34736 -15.29498 -15.14399 -14.58337 -14.44972 -14.18854 -14.10985 -13.72758 -13.32450 -13.27060 -12.83635 -12.36975 -12.15135 -12.01361 -11.77731 -11.60828 -11.08324 -10.48684 -10.30600 -10.21191 -10.06252 -9.63993 -9.59875 -8.92335 -8.65642 -8.59451 -8.07214 -6.48790 -3.90651 0.52240 0.92616 2.71478 2.75400 3.15912 3.22485 3.24203 3.31699 3.73087 3.79710 4.05557 4.14387 4.22145 4.52502 4.72577 4.72939 4.77006 4.90736 5.02891 5.11109 5.19490 5.32876 5.51623 5.72343 5.92331 5.97329 6.09988 6.11936 6.67849 6.74833 7.45849 7.48525 7.89288 7.94552 8.40611 8.48947 9.07379 9.42073 9.90508 10.68145 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034618 B = 0.002989 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.634465 B = 9365.161991 C =10153.350955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.309 6.309 3 C 0.095 3.905 4 C -0.119 4.119 5 C -0.070 4.070 6 C 0.046 3.954 7 C 0.570 3.430 8 O -0.545 6.545 9 N -0.686 5.686 10 C 0.106 3.894 11 C 0.428 3.572 12 O -0.593 6.593 13 N -0.550 5.550 14 C -0.305 4.305 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.896 5.896 18 Si 0.934 3.066 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 N -0.415 5.415 23 C 0.020 3.980 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.150 0.850 28 H 0.157 0.843 29 H 0.421 0.579 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.396 0.604 33 H 0.274 0.726 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -21.919 -0.017 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.220 6.220 3 C 0.046 3.954 4 C -0.145 4.145 5 C -0.091 4.091 6 C -0.093 4.093 7 C 0.355 3.645 8 O -0.424 6.424 9 N -0.339 5.339 10 C -0.021 4.021 11 C 0.214 3.786 12 O -0.479 6.479 13 N -0.185 5.185 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 N -0.127 5.127 23 C -0.141 4.141 24 H 0.123 0.877 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.175 0.825 29 H 0.261 0.739 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.085 -21.223 -0.017 21.325 hybrid contribution -0.291 0.186 0.000 0.346 sum -2.376 -21.037 -0.016 21.171 Atomic orbital electron populations 1.23204 0.77519 1.04617 1.02074 1.86047 1.22087 1.25975 1.87890 1.20362 0.93361 0.85832 0.95798 1.20912 0.91549 0.98828 1.03178 1.21985 1.02356 0.90499 0.94216 1.21074 0.89312 0.94493 1.04382 1.17675 0.86178 0.83336 0.77343 1.90775 1.13421 1.86623 1.51537 1.45575 1.12207 1.04345 1.71774 1.21032 0.95681 0.81946 1.03470 1.19724 0.89447 0.83834 0.85609 1.90517 1.19639 1.80763 1.57028 1.41778 1.10091 1.03784 1.62818 1.19687 0.90153 0.85310 1.48260 0.87721 1.25317 0.97284 0.98282 0.96839 1.69607 1.16254 1.18338 1.49402 0.85872 0.80068 0.78863 0.79151 1.19784 1.20876 1.19788 1.67463 1.11015 1.27026 1.07207 1.22983 1.00773 0.86629 1.03751 0.87707 0.91998 0.91989 0.83265 0.82528 0.73870 0.89545 0.89535 0.77026 0.91563 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.61 10.50 -18.88 -0.20 -2.80 16 3 C 0.09 0.94 6.72 -38.85 -0.26 0.68 16 4 C -0.12 -1.15 10.12 -39.18 -0.40 -1.54 16 5 C -0.07 -0.81 9.62 -39.09 -0.38 -1.19 16 6 C 0.05 0.67 6.74 -83.02 -0.56 0.11 16 7 C 0.57 9.85 7.80 -12.30 -0.10 9.75 16 8 O -0.55 -10.30 16.31 5.32 0.09 -10.22 16 9 N -0.69 -12.60 5.52 -62.41 -0.34 -12.94 16 10 C 0.11 2.03 6.15 -5.20 -0.03 2.00 16 11 C 0.43 10.10 7.85 -10.99 -0.09 10.01 16 12 O -0.59 -15.69 15.24 5.54 0.08 -15.61 16 13 N -0.55 -13.83 5.29 -10.96 -0.06 -13.89 16 14 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 15 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 17 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 18 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 N -0.42 -5.86 9.52 -9.68 -0.09 -5.96 16 23 C 0.02 0.22 10.21 -17.38 -0.18 0.04 16 24 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 26 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 27 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.16 1.65 7.63 -52.49 -0.40 1.25 16 29 H 0.42 8.03 6.76 -40.82 -0.28 7.75 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.17 1.32 6.31 -52.49 -0.33 0.99 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -32.70 308.42 -4.73 -37.44 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -3.33 Total: 13.99 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: -1.23 Total: 13.01 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.23 Total: -56.16 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.03 Total: -28.63 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.70 -4.73 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360621584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.413 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds