Wall clock time and date at job start Tue Mar 31 2020 00:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34780 * 119.99865 * 2 1 4 4 O 1.21603 * 120.00058 * 0.27325 * 3 2 1 5 5 C 1.47435 * 119.99939 * 180.02562 * 3 2 1 6 6 C 1.39731 * 120.20525 * 354.29749 * 5 3 2 7 7 C 1.37751 * 119.92408 * 179.77058 * 6 5 3 8 8 N 1.48026 * 119.82387 * 180.21115 * 7 6 5 9 9 O 1.21799 * 119.99860 * 180.27499 * 8 7 6 10 10 O 1.21801 * 119.99750 * 0.27971 * 8 7 6 11 11 C 1.38604 * 120.35204 * 0.48277 * 7 6 5 12 12 C 1.37955 * 120.42335 * 359.77658 * 11 7 6 13 13 C 1.38959 * 120.06334 * 359.97438 * 12 11 7 14 14 N 1.38875 * 120.17510 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99838 * 5.51815 * 14 13 12 16 16 C 1.50705 * 109.46733 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00292 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99777 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46844 * 60.00244 * 20 18 16 22 22 H 1.48506 * 109.47057 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46893 * 299.99963 * 20 18 16 24 24 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46921 * 300.00003 * 1 2 3 26 26 H 1.08997 * 109.47386 * 60.00003 * 1 2 3 27 27 H 0.97002 * 120.00184 * 179.97438 * 2 1 3 28 28 H 1.08001 * 120.03898 * 359.97438 * 6 5 3 29 29 H 1.07998 * 119.78986 * 179.74050 * 11 7 6 30 30 H 1.08007 * 119.97071 * 179.97438 * 12 11 7 31 31 H 0.97001 * 120.00001 * 185.52148 * 14 13 12 32 32 H 1.08996 * 109.47412 * 300.00376 * 15 14 13 33 33 H 1.09002 * 109.47046 * 60.00584 * 15 14 13 34 34 H 0.97001 * 120.00809 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2203 0.0050 5 6 3.6133 1.1673 -0.0006 6 6 4.3163 -0.0344 0.1189 7 6 5.6938 -0.0281 0.1129 8 7 6.4363 -1.3028 0.2349 9 8 7.6543 -1.3005 0.2350 10 8 5.8293 -2.3540 0.3350 11 6 6.3883 1.1660 -0.0010 12 6 5.7088 2.3612 -0.1144 13 6 4.3193 2.3747 -0.1155 14 7 3.6329 3.5766 -0.2289 15 6 4.3687 4.8205 -0.4691 16 6 3.3982 5.9705 -0.5504 17 1 2.3393 5.7927 -0.4343 18 6 3.8621 7.2496 -0.7729 19 7 5.1516 7.4661 -0.9147 20 14 2.6592 8.6753 -0.8729 21 1 1.9112 8.7823 0.4054 22 1 3.4050 9.9360 -1.1177 23 1 1.7053 8.4408 -1.9866 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.9501 -0.8400 0.0004 28 1 3.7804 -0.9673 0.2125 29 1 7.4682 1.1607 -0.0005 30 1 6.2573 3.2875 -0.2024 31 1 2.6663 3.5926 -0.1492 32 1 5.0680 4.9927 0.3491 33 1 4.9189 4.7419 -1.4068 34 1 5.4780 8.3660 -1.0716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362671726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:48 Heat of formation + Delta-G solvation = -15.140079 kcal Electronic energy + Delta-G solvation = -21099.108990 eV Core-core repulsion = 17614.149209 eV Total energy + Delta-G solvation = -3484.959781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85703 -40.45590 -38.44848 -36.26755 -35.93233 -34.59539 -32.93222 -31.65149 -30.38124 -27.63507 -26.84547 -25.19972 -24.00970 -22.90570 -21.33718 -20.69429 -19.33333 -18.46232 -17.66348 -17.22703 -16.92043 -16.27778 -16.11599 -15.42242 -15.30466 -14.57468 -14.55357 -13.89838 -13.73882 -13.33675 -13.03356 -12.98561 -12.47464 -12.36027 -12.26976 -11.78574 -11.29764 -11.09476 -11.08264 -10.91023 -10.90873 -10.39249 -10.22429 -9.97030 -9.60460 -9.45156 -9.23371 -8.76523 -7.37572 -6.38896 -4.45655 0.29472 0.77027 1.76071 1.77698 2.75485 3.04822 3.16255 3.20811 3.23205 3.69110 3.83717 4.22605 4.43102 4.50901 4.90764 4.99183 5.01108 5.08916 5.25136 5.35133 5.52731 5.61631 5.69600 5.94121 6.03777 6.20197 6.35960 6.65145 6.77847 7.01558 7.24573 7.35052 7.66325 7.76035 7.96664 7.99326 8.38327 8.63512 9.21863 10.71371 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.004826 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.825498 B = 5800.361744 C = 7413.927222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.733 5.733 3 C 0.575 3.425 4 O -0.537 6.537 5 C -0.250 4.250 6 C 0.040 3.960 7 C -0.143 4.143 8 N 0.053 4.947 9 O -0.188 6.188 10 O -0.197 6.197 11 C 0.013 3.987 12 C -0.200 4.200 13 C 0.319 3.681 14 N -0.658 5.658 15 C 0.228 3.772 16 C -0.546 4.546 17 H 0.067 0.933 18 C 0.068 3.932 19 N -0.888 5.888 20 Si 0.908 3.092 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.402 0.598 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.421 0.579 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 -13.751 1.530 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.385 5.385 3 C 0.365 3.635 4 O -0.415 6.415 5 C -0.260 4.260 6 C 0.019 3.981 7 C -0.231 4.231 8 N 0.563 4.437 9 O -0.398 6.398 10 O -0.406 6.406 11 C -0.009 4.009 12 C -0.224 4.224 13 C 0.191 3.809 14 N -0.279 5.279 15 C 0.108 3.892 16 C -0.584 4.584 17 H 0.085 0.915 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.734 3.266 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.237 0.763 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.270 0.730 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.416 -11.960 1.399 12.826 hybrid contribution -0.408 0.036 -0.015 0.410 sum -4.824 -11.925 1.383 12.938 Atomic orbital electron populations 1.21561 0.79042 1.02263 1.02670 1.45610 1.07960 1.08399 1.76533 1.17877 0.86343 0.83769 0.75504 1.90513 1.69273 1.30563 1.51140 1.18981 0.92587 0.92129 1.22336 1.20633 0.91360 0.97860 0.88293 1.20357 0.91710 0.83691 1.27384 1.43462 1.01013 1.02672 0.96574 1.94494 0.95947 1.94015 1.55376 1.94463 1.70259 1.20637 1.55215 1.20765 1.01293 0.89131 0.89697 1.20822 0.91943 0.98810 1.10780 1.18321 0.91746 0.86356 0.84468 1.47058 1.13197 1.04865 1.62790 1.19606 0.93361 0.79111 0.97158 1.21080 0.93633 0.91478 1.52227 0.91520 1.24907 0.95596 0.98929 0.94213 1.69907 1.12695 1.22573 1.47294 0.86390 0.80589 0.80597 0.78976 1.19866 1.20884 1.19884 0.90557 0.91985 0.91954 0.76330 0.83841 0.83273 0.82700 0.73015 0.94633 0.94623 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.70 59.85 0.64 1.41 16 2 N -0.73 -7.71 5.66 -68.17 -0.39 -8.09 16 3 C 0.58 8.52 7.75 -12.51 -0.10 8.42 16 4 O -0.54 -9.83 13.64 5.28 0.07 -9.76 16 5 C -0.25 -3.71 5.89 -104.81 -0.62 -4.33 16 6 C 0.04 0.51 9.02 -39.20 -0.35 0.16 16 7 C -0.14 -2.05 6.84 -79.99 -0.55 -2.60 16 8 N 0.05 0.82 4.45 33.94 0.15 0.97 16 9 O -0.19 -3.05 18.43 -29.46 -0.54 -3.60 16 10 O -0.20 -3.07 18.43 -29.46 -0.54 -3.62 16 11 C 0.01 0.17 9.54 -39.55 -0.38 -0.20 16 12 C -0.20 -3.09 9.30 -39.42 -0.37 -3.46 16 13 C 0.32 5.46 6.65 -83.61 -0.56 4.90 16 14 N -0.66 -13.24 5.58 -59.62 -0.33 -13.58 16 15 C 0.23 5.30 4.69 -5.19 -0.02 5.27 16 16 C -0.55 -14.18 9.28 -34.44 -0.32 -14.50 16 17 H 0.07 1.73 7.60 -52.49 -0.40 1.33 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 20 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.40 3.12 6.89 -40.82 -0.28 2.83 16 28 H 0.14 1.43 5.98 -52.49 -0.31 1.12 16 29 H 0.15 1.80 7.59 -52.49 -0.40 1.41 16 30 H 0.16 2.41 6.72 -52.48 -0.35 2.06 16 31 H 0.42 8.86 4.83 -40.94 -0.20 8.66 16 32 H 0.04 0.86 7.73 -51.93 -0.40 0.45 16 33 H 0.04 0.87 8.12 -51.93 -0.42 0.44 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -29.19 303.66 -7.17 -36.37 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.17 Total: 8.08 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.72 Total: -3.25 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.17 Total: -44.03 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -1.01 Total: -16.97 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.19 -7.17 -36.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362671726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.225 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds