Wall clock time and date at job start Tue Mar 31 2020 00:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34780 * 119.99865 * 2 1 4 4 O 1.21603 * 120.00058 * 0.27325 * 3 2 1 5 5 C 1.47435 * 119.99939 * 180.02562 * 3 2 1 6 6 C 1.39731 * 120.20525 * 354.29749 * 5 3 2 7 7 C 1.37751 * 119.92408 * 179.77058 * 6 5 3 8 8 N 1.48026 * 119.82387 * 180.21115 * 7 6 5 9 9 O 1.21799 * 119.99860 * 180.27499 * 8 7 6 10 10 O 1.21801 * 119.99750 * 0.27971 * 8 7 6 11 11 C 1.38604 * 120.35204 * 0.48277 * 7 6 5 12 12 C 1.37955 * 120.42335 * 359.77658 * 11 7 6 13 13 C 1.38959 * 120.06334 * 359.97438 * 12 11 7 14 14 N 1.38875 * 120.17510 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99838 * 5.51815 * 14 13 12 16 16 C 1.50705 * 109.46733 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00292 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99777 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46844 * 60.00244 * 20 18 16 22 22 H 1.48506 * 109.47057 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46893 * 299.99963 * 20 18 16 24 24 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46921 * 300.00003 * 1 2 3 26 26 H 1.08997 * 109.47386 * 60.00003 * 1 2 3 27 27 H 0.97002 * 120.00184 * 179.97438 * 2 1 3 28 28 H 1.08001 * 120.03898 * 359.97438 * 6 5 3 29 29 H 1.07998 * 119.78986 * 179.74050 * 11 7 6 30 30 H 1.08007 * 119.97071 * 179.97438 * 12 11 7 31 31 H 0.97001 * 120.00001 * 185.52148 * 14 13 12 32 32 H 1.08996 * 109.47412 * 300.00376 * 15 14 13 33 33 H 1.09002 * 109.47046 * 60.00584 * 15 14 13 34 34 H 0.97001 * 120.00809 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2203 0.0050 5 6 3.6133 1.1673 -0.0006 6 6 4.3163 -0.0344 0.1189 7 6 5.6938 -0.0281 0.1129 8 7 6.4363 -1.3028 0.2349 9 8 7.6543 -1.3005 0.2350 10 8 5.8293 -2.3540 0.3350 11 6 6.3883 1.1660 -0.0010 12 6 5.7088 2.3612 -0.1144 13 6 4.3193 2.3747 -0.1155 14 7 3.6329 3.5766 -0.2289 15 6 4.3687 4.8205 -0.4691 16 6 3.3982 5.9705 -0.5504 17 1 2.3393 5.7927 -0.4343 18 6 3.8621 7.2496 -0.7729 19 7 5.1516 7.4661 -0.9147 20 14 2.6592 8.6753 -0.8729 21 1 1.9112 8.7823 0.4054 22 1 3.4050 9.9360 -1.1177 23 1 1.7053 8.4408 -1.9866 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.9501 -0.8400 0.0004 28 1 3.7804 -0.9673 0.2125 29 1 7.4682 1.1607 -0.0005 30 1 6.2573 3.2875 -0.2024 31 1 2.6663 3.5926 -0.1492 32 1 5.0680 4.9927 0.3491 33 1 4.9189 4.7419 -1.4068 34 1 5.4780 8.3660 -1.0716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362671726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:47 Heat of formation + Delta-G solvation = -34.171916 kcal Electronic energy + Delta-G solvation = -21099.934273 eV Core-core repulsion = 17614.149209 eV Total energy + Delta-G solvation = -3485.785064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.09656 -41.66130 -39.65103 -37.51769 -37.34176 -35.74657 -34.76334 -32.83160 -31.80236 -29.21245 -27.83951 -26.61602 -25.32361 -24.40857 -22.64817 -21.88630 -20.48235 -19.74304 -19.21852 -18.46124 -18.10948 -17.82222 -17.36474 -16.86877 -16.48160 -16.11469 -15.75388 -15.33645 -15.01390 -14.56406 -14.36998 -14.14068 -14.11892 -13.66845 -13.15800 -13.01903 -12.84720 -12.83083 -12.54549 -12.31435 -12.16098 -12.10133 -11.70233 -11.61080 -11.11353 -10.72522 -10.58620 -10.21576 -8.81763 -8.38015 -6.51399 -0.95027 -0.40402 0.50348 0.53727 1.38777 1.40062 1.48723 1.58118 2.08822 2.25509 2.47813 2.51160 2.98021 3.36039 3.37419 3.76695 3.81555 4.08671 4.31564 4.41362 4.55764 4.62807 4.72219 4.78360 4.89486 4.95957 5.11660 5.14017 5.27793 5.41513 5.52409 5.76298 6.10810 6.36950 6.51730 6.70142 6.75251 7.14277 7.20561 8.72595 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.004826 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.825498 B = 5800.361744 C = 7413.927222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.713 5.713 3 C 0.569 3.431 4 O -0.576 6.576 5 C -0.246 4.246 6 C 0.056 3.944 7 C -0.142 4.142 8 N 0.052 4.948 9 O -0.207 6.207 10 O -0.181 6.181 11 C 0.026 3.974 12 C -0.209 4.209 13 C 0.302 3.698 14 N -0.679 5.679 15 C 0.248 3.752 16 C -0.566 4.566 17 H 0.061 0.939 18 C 0.021 3.979 19 N -0.917 5.917 20 Si 0.971 3.029 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.269 1.269 24 H 0.119 0.881 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.418 0.582 28 H 0.180 0.820 29 H 0.169 0.831 30 H 0.147 0.853 31 H 0.416 0.584 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 -15.809 1.715 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.364 5.364 3 C 0.358 3.642 4 O -0.458 6.458 5 C -0.255 4.255 6 C 0.036 3.964 7 C -0.230 4.230 8 N 0.562 4.438 9 O -0.413 6.413 10 O -0.394 6.394 11 C 0.005 3.995 12 C -0.232 4.232 13 C 0.179 3.821 14 N -0.304 5.304 15 C 0.126 3.874 16 C -0.603 4.603 17 H 0.079 0.921 18 C -0.181 4.181 19 N -0.555 5.555 20 Si 0.795 3.205 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.194 1.194 24 H 0.137 0.863 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.256 0.744 28 H 0.198 0.802 29 H 0.186 0.814 30 H 0.165 0.835 31 H 0.264 0.736 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.192 -14.095 1.588 15.105 hybrid contribution -0.144 0.411 -0.049 0.438 sum -5.336 -13.684 1.539 14.768 Atomic orbital electron populations 1.21775 0.77602 1.04811 1.01805 1.45532 1.08878 1.07710 1.74282 1.17961 0.86299 0.84383 0.75548 1.90496 1.69804 1.32264 1.53220 1.19057 0.93032 0.91805 1.21637 1.20877 0.90857 0.98404 0.86289 1.20512 0.92245 0.83391 1.26853 1.43545 1.00993 1.02833 0.96455 1.94516 0.96196 1.94122 1.56480 1.94453 1.70110 1.20750 1.54119 1.20909 1.02255 0.88399 0.87951 1.20775 0.91496 0.99261 1.11681 1.18653 0.92440 0.86226 0.84802 1.46685 1.12613 1.04809 1.66309 1.19081 0.92581 0.80225 0.95477 1.21423 0.93885 0.92821 1.52212 0.92109 1.25741 0.97220 1.01378 0.93729 1.70002 1.14223 1.23226 1.48029 0.85412 0.78507 0.77575 0.79050 1.19399 1.20101 1.19448 0.86268 0.92789 0.92965 0.74404 0.80244 0.81400 0.83524 0.73610 0.96332 0.96564 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.70 127.77 1.37 2.61 16 2 N -0.71 -13.05 5.66 -487.85 -2.76 -15.81 16 3 C 0.57 16.23 7.75 86.67 0.67 16.91 16 4 O -0.58 -21.38 13.64 -4.04 -0.06 -21.43 16 5 C -0.25 -6.99 5.89 -19.98 -0.12 -7.10 16 6 C 0.06 1.29 9.02 22.52 0.20 1.49 16 7 C -0.14 -3.71 6.84 36.35 0.25 -3.46 16 8 N 0.05 1.46 4.45 -46.52 -0.21 1.25 16 9 O -0.21 -6.29 18.43 18.89 0.35 -5.94 16 10 O -0.18 -4.96 18.43 18.89 0.35 -4.61 16 11 C 0.03 0.68 9.54 22.29 0.21 0.89 16 12 C -0.21 -6.51 9.30 22.38 0.21 -6.30 16 13 C 0.30 10.47 6.65 38.71 0.26 10.73 16 14 N -0.68 -28.59 5.58 -342.53 -1.91 -30.50 16 15 C 0.25 12.15 4.69 85.63 0.40 12.56 16 16 C -0.57 -30.43 9.28 25.60 0.24 -30.19 16 17 H 0.06 3.26 7.60 -2.91 -0.02 3.24 16 18 C 0.02 1.10 5.46 84.65 0.46 1.56 16 19 N -0.92 -50.90 13.29 21.45 0.28 -50.62 16 20 Si 0.97 41.94 29.54 68.60 2.03 43.96 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.42 4.76 6.89 -92.71 -0.64 4.13 16 28 H 0.18 2.74 5.98 -2.91 -0.02 2.72 16 29 H 0.17 3.78 7.59 -2.91 -0.02 3.76 16 30 H 0.15 4.81 6.72 -2.91 -0.02 4.79 16 31 H 0.42 18.31 4.83 -94.68 -0.46 17.85 16 32 H 0.02 0.96 7.73 -2.39 -0.02 0.94 16 33 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -64.17 303.66 2.30 -61.87 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.08 Total: 22.14 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 4.15 Total: -0.31 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -4.60 Total: -95.67 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: 0.64 Total: -31.98 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -64.17 2.30 -61.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362671726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.694 kcal (2) G-P(sol) polarization free energy of solvation -64.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds