Wall clock time and date at job start Tue Mar 31 2020 00:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35728 * 116.99846 * 2 1 4 4 N 1.32148 * 119.73076 * 0.02562 * 3 2 1 5 5 C 1.31993 * 121.71949 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.99475 * 359.97438 * 5 4 3 7 7 C 1.38705 * 119.35274 * 0.26692 * 6 5 4 8 8 C 1.39036 * 118.41886 * 359.51421 * 7 6 5 9 9 N 1.39889 * 120.51342 * 180.23279 * 8 7 6 10 10 C 1.34775 * 119.99859 * 325.84643 * 9 8 7 11 11 O 1.21393 * 120.00218 * 4.23567 * 10 9 8 12 12 C 1.49335 * 119.99849 * 184.23387 * 10 9 8 13 13 O 1.21363 * 119.99850 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00224 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00381 * 179.97438 * 14 12 10 16 16 C 1.50700 * 109.47407 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99928 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99957 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00300 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00031 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47164 * 59.99509 * 20 18 16 22 22 H 1.48499 * 109.47258 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47128 * 299.99633 * 20 18 16 24 24 H 1.09003 * 109.46922 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47037 * 299.99497 * 1 2 3 26 26 H 1.08997 * 109.47243 * 59.99926 * 1 2 3 27 27 H 1.08008 * 119.50135 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.32262 * 180.02562 * 6 5 4 29 29 H 1.08006 * 120.78938 * 179.74911 * 7 6 5 30 30 H 0.97001 * 119.99705 * 145.83750 * 9 8 7 31 31 H 0.97001 * 119.99689 * 0.02562 * 14 12 10 32 32 H 1.08998 * 109.47396 * 300.00512 * 15 14 12 33 33 H 1.09000 * 109.46667 * 60.00126 * 15 14 12 34 34 H 0.96994 * 120.00338 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 7 1.3202 2.3142 0.0005 5 6 1.8782 3.5104 0.0000 6 6 3.2517 3.6544 -0.0005 7 6 4.0539 2.5229 -0.0062 8 6 3.4392 1.2759 -0.0008 9 7 4.2061 0.1059 -0.0012 10 6 5.3806 0.0704 -0.6613 11 8 5.8101 1.0749 -1.1905 12 6 6.1536 -1.2048 -0.7416 13 8 5.7245 -2.2089 -0.2120 14 7 7.3279 -1.2406 -1.4020 15 6 8.0866 -2.4914 -1.4803 16 6 9.3516 -2.2632 -2.2668 17 1 9.5690 -1.2843 -2.6678 18 6 10.2315 -3.3042 -2.4743 19 7 9.9671 -4.4962 -1.9855 20 14 11.8000 -3.0213 -3.4486 21 1 12.6223 -1.9856 -2.7730 22 1 12.5689 -4.2892 -3.5280 23 1 11.4559 -2.5639 -4.8188 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.2512 4.3898 0.0001 28 1 3.6967 4.6384 -0.0005 29 1 5.1306 2.6086 -0.0108 30 1 3.8925 -0.6797 0.4736 31 1 7.6711 -0.4379 -1.8249 32 1 8.3399 -2.8263 -0.4744 33 1 7.4828 -3.2521 -1.9752 34 1 10.5862 -5.2285 -2.1312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427897829.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:23 Heat of formation + Delta-G solvation = -65.161664 kcal Electronic energy + Delta-G solvation = -20726.193451 eV Core-core repulsion = 17239.064571 eV Total energy + Delta-G solvation = -3487.128880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30040 -40.01180 -38.26352 -37.84212 -35.49045 -34.28296 -32.39530 -31.98241 -30.17887 -27.80642 -27.43545 -25.16556 -23.49985 -23.07390 -21.80435 -19.98639 -19.00826 -18.47295 -17.46817 -17.04011 -16.46267 -16.11721 -15.68652 -15.49990 -15.20997 -15.01790 -14.39389 -14.27696 -13.83563 -13.61619 -13.43892 -13.13031 -12.73828 -12.06804 -12.00403 -11.93277 -11.45962 -11.33356 -11.08078 -11.03727 -10.91355 -10.35915 -10.07981 -9.56396 -9.51099 -9.11283 -8.84242 -8.22234 -8.11849 -6.23135 -4.30832 0.76509 1.06556 1.78418 2.56552 2.81407 3.24235 3.28835 3.30908 3.47587 3.67440 3.95967 4.16405 4.30930 4.65833 4.79759 4.93699 5.04456 5.10415 5.11549 5.13493 5.19167 5.42286 5.66395 5.89038 6.03142 6.33684 6.89773 7.01402 7.06677 7.17158 7.34738 7.52702 7.56915 7.80357 7.85593 8.35117 8.53911 8.80704 9.35490 10.86891 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.003318 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.444742 B = 8436.566820 C = 9089.603671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.306 6.306 3 C 0.302 3.698 4 N -0.523 5.523 5 C 0.118 3.882 6 C -0.189 4.189 7 C -0.048 4.048 8 C 0.083 3.917 9 N -0.637 5.637 10 C 0.510 3.490 11 O -0.510 6.510 12 C 0.493 3.507 13 O -0.533 6.533 14 N -0.670 5.670 15 C 0.246 3.754 16 C -0.548 4.548 17 H 0.066 0.934 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.907 3.093 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.161 0.839 28 H 0.142 0.858 29 H 0.159 0.841 30 H 0.428 0.572 31 H 0.404 0.596 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.352 14.128 4.899 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.213 6.213 3 C 0.120 3.880 4 N -0.247 5.247 5 C -0.038 4.038 6 C -0.209 4.209 7 C -0.076 4.076 8 C -0.015 4.015 9 N -0.285 5.285 10 C 0.293 3.707 11 O -0.384 6.384 12 C 0.271 3.729 13 O -0.411 6.411 14 N -0.319 5.319 15 C 0.127 3.873 16 C -0.586 4.586 17 H 0.084 0.916 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.734 3.266 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.178 0.822 28 H 0.160 0.840 29 H 0.177 0.823 30 H 0.267 0.733 31 H 0.239 0.761 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.996 13.480 4.872 22.233 hybrid contribution 1.435 0.259 -0.511 1.545 sum -15.562 13.739 4.360 21.212 Atomic orbital electron populations 1.22869 0.76872 1.03138 1.02365 1.86251 1.23183 1.23968 1.87888 1.19647 0.87569 0.85574 0.95170 1.67333 1.39824 0.98509 1.19054 1.22379 0.93047 0.93480 0.94882 1.21948 0.94408 0.99666 1.04920 1.21717 1.02321 0.89466 0.94076 1.17768 0.87501 0.88022 1.08164 1.43001 1.20058 1.14222 1.51209 1.20963 0.81475 0.90323 0.77898 1.90708 1.67767 1.35421 1.44474 1.19592 0.83521 0.87533 0.82273 1.90749 1.68914 1.34781 1.46687 1.46415 1.18894 1.16547 1.50039 1.19356 0.90101 0.79647 0.98232 1.21162 1.04720 0.97025 1.35696 0.91581 1.24937 0.98565 0.94732 0.95612 1.69953 1.37135 1.01001 1.44141 0.86415 0.82238 0.77624 0.80327 1.19949 1.21024 1.19947 0.88439 0.92276 0.92272 0.82166 0.84011 0.82304 0.73333 0.76080 0.94649 0.94667 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.78 10.05 -18.89 -0.19 -3.97 16 3 C 0.30 3.92 7.51 -16.92 -0.13 3.79 16 4 N -0.52 -6.09 9.21 -13.15 -0.12 -6.21 16 5 C 0.12 1.09 11.17 -17.53 -0.20 0.89 16 6 C -0.19 -1.77 10.10 -39.46 -0.40 -2.17 16 7 C -0.05 -0.59 8.81 -39.11 -0.34 -0.94 16 8 C 0.08 1.13 6.35 -83.39 -0.53 0.60 16 9 N -0.64 -9.32 5.18 -10.08 -0.05 -9.38 16 10 C 0.51 8.65 7.74 -11.64 -0.09 8.56 16 11 O -0.51 -8.92 13.92 5.46 0.08 -8.85 16 12 C 0.49 9.85 7.89 -11.64 -0.09 9.76 16 13 O -0.53 -11.83 16.48 5.49 0.09 -11.74 16 14 N -0.67 -14.31 5.54 -61.95 -0.34 -14.66 16 15 C 0.25 6.35 5.43 -5.19 -0.03 6.32 16 16 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 16 17 H 0.07 1.67 7.60 -52.49 -0.40 1.27 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 20 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 26 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 27 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 28 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 29 H 0.16 2.02 6.27 -52.48 -0.33 1.70 16 30 H 0.43 5.94 8.05 -40.82 -0.33 5.61 16 31 H 0.40 7.95 7.79 -40.82 -0.32 7.63 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -31.36 309.41 -4.80 -36.16 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -3.46 Total: 8.15 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: -1.17 Total: 14.95 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.22 Total: -54.98 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.02 Total: -24.56 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.36 -4.80 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427897829.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.998 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds