Wall clock time and date at job start Tue Mar 31 2020 01:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 117.00295 * 2 1 4 4 O 1.20826 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00326 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47586 * 179.97438 * 5 3 2 7 7 C 1.36764 * 119.99813 * 96.24769 * 6 5 3 8 8 H 1.07997 * 119.99349 * 164.06264 * 7 6 5 9 9 C 1.39060 * 120.00097 * 344.06823 * 7 6 5 10 10 N 1.31363 * 120.00254 * 348.85158 * 9 7 6 11 11 Si 1.86804 * 119.99957 * 168.85780 * 9 7 6 12 12 H 1.48500 * 109.47139 * 89.99892 * 11 9 7 13 13 H 1.48500 * 109.47247 * 209.99579 * 11 9 7 14 14 H 1.48496 * 109.46959 * 329.99907 * 11 9 7 15 15 C 1.34776 * 119.99885 * 275.97999 * 6 5 3 16 16 O 1.21839 * 120.00039 * 5.55709 * 15 6 5 17 17 C 1.41377 * 119.99664 * 185.55417 * 15 6 5 18 18 C 1.35690 * 119.99540 * 174.15247 * 17 15 6 19 19 C 1.41718 * 120.00465 * 349.75130 * 18 17 15 20 20 C 1.38140 * 126.95428 * 127.77643 * 19 18 17 21 21 N 1.33319 * 107.57107 * 180.02562 * 20 19 18 22 22 C 1.30823 * 109.79883 * 0.02562 * 21 20 19 23 23 N 1.34703 * 109.44084 * 359.72575 * 22 21 20 24 24 H 0.97003 * 126.44963 * 180.27579 * 23 22 21 25 25 H 1.09000 * 109.47240 * 300.00157 * 1 2 3 26 26 H 1.09004 * 109.46788 * 60.00213 * 1 2 3 27 27 H 1.08994 * 109.47412 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47093 * 60.00004 * 5 3 2 29 29 H 1.09001 * 109.46961 * 300.00022 * 5 3 2 30 30 H 0.97002 * 120.00568 * 179.97438 * 10 9 7 31 31 H 1.07993 * 120.00228 * 354.16133 * 17 15 6 32 32 H 1.08001 * 119.99645 * 169.74411 * 18 17 15 33 33 H 1.07995 * 126.21721 * 0.02562 * 20 19 18 34 34 H 1.07997 * 125.28258 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2988 3.2996 1.1770 8 1 4.8430 4.2324 1.1664 9 6 3.9206 2.7288 2.3873 10 7 3.0780 1.7211 2.4035 11 14 4.6107 3.3950 3.9903 12 1 3.7223 4.4686 4.5033 13 1 4.6898 2.2987 4.9888 14 1 5.9685 3.9474 3.7530 15 6 4.0568 3.3596 -1.1614 16 8 3.6831 2.8388 -2.1975 17 6 4.5691 4.6772 -1.1772 18 6 4.7557 5.3184 -2.3584 19 6 4.6470 4.6039 -3.5775 20 6 3.8689 4.9376 -4.6691 21 7 4.0583 4.0017 -5.5995 22 6 4.9035 3.1049 -5.1603 23 7 5.3013 3.4350 -3.9164 24 1 5.9276 2.9435 -3.3622 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.9564 0.7805 -0.8892 29 1 3.9557 0.7809 0.8908 30 1 2.8145 1.3227 3.2477 31 1 4.8120 5.1733 -0.2492 32 1 4.9870 6.3733 -2.3696 33 1 3.2242 5.7999 -4.7535 34 1 5.2348 2.2373 -5.7115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492758945.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:59 Heat of formation + Delta-G solvation = -10.954746 kcal Electronic energy + Delta-G solvation = -22204.224733 eV Core-core repulsion = 18719.446442 eV Total energy + Delta-G solvation = -3484.778292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27243 -39.57442 -38.48217 -35.66177 -34.79821 -33.22869 -31.78955 -31.58811 -29.14061 -27.82213 -26.34466 -25.02370 -22.95055 -20.95286 -20.49090 -19.92356 -19.19523 -17.90091 -16.82161 -16.61380 -15.98296 -15.48105 -15.31121 -14.75356 -14.34376 -14.18258 -13.87082 -13.47985 -13.31579 -12.90952 -12.63033 -12.51336 -12.36846 -12.10675 -11.59627 -11.44502 -11.31592 -10.87066 -10.65324 -10.49854 -9.89115 -9.85933 -9.74019 -9.40271 -9.10977 -8.92451 -8.67282 -8.11638 -7.30892 -6.64096 -4.13974 1.46044 2.88754 3.02521 3.06944 3.09847 3.56262 3.65341 3.73428 3.84850 3.93296 4.29185 4.67254 4.95010 5.18761 5.58307 5.66973 5.74538 5.76459 5.85062 5.90577 6.05029 6.10547 6.25456 6.34755 6.56426 6.70152 6.82940 7.00650 7.15772 7.31999 7.36572 7.48986 7.98194 8.07756 8.62297 8.79989 9.03888 9.21424 9.64676 10.38251 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.006811 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.151748 B = 4110.235179 C = 5384.339801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.374 6.374 3 C 0.487 3.513 4 O -0.505 6.505 5 C 0.152 3.848 6 N -0.414 5.414 7 C -0.324 4.324 8 H 0.109 0.891 9 C 0.033 3.967 10 N -0.873 5.873 11 Si 0.934 3.066 12 H -0.276 1.276 13 H -0.280 1.280 14 H -0.267 1.267 15 C 0.473 3.527 16 O -0.593 6.593 17 C -0.150 4.150 18 C -0.063 4.063 19 C 0.045 3.955 20 C -0.021 4.021 21 N -0.503 5.503 22 C 0.175 3.825 23 N -0.528 5.528 24 H 0.414 0.586 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.276 0.724 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.163 0.837 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -0.255 -2.710 5.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.329 3.671 4 O -0.390 6.390 5 C 0.026 3.974 6 N -0.130 5.130 7 C -0.451 4.451 8 H 0.126 0.874 9 C -0.171 4.171 10 N -0.512 5.512 11 Si 0.760 3.240 12 H -0.201 1.201 13 H -0.205 1.205 14 H -0.192 1.192 15 C 0.266 3.734 16 O -0.480 6.480 17 C -0.172 4.172 18 C -0.086 4.086 19 C -0.072 4.072 20 C -0.172 4.172 21 N -0.222 5.222 22 C -0.108 4.108 23 N -0.128 5.128 24 H 0.252 0.748 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.180 0.820 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.676 -0.390 -3.821 5.316 hybrid contribution 0.349 0.048 2.343 2.370 sum 4.025 -0.342 -1.478 4.301 Atomic orbital electron populations 1.22943 0.78688 1.01886 1.01627 1.86456 1.21686 1.35441 1.85596 1.23959 0.92287 0.80513 0.70347 1.90530 1.66617 1.36454 1.45434 1.20770 0.87281 0.85374 1.03974 1.43514 1.54765 1.08362 1.06406 1.19815 1.34653 1.08157 0.82492 0.87389 1.25353 0.95148 0.96493 1.00126 1.69752 1.29556 1.23799 1.28129 0.85798 0.79247 0.78602 0.80330 1.20124 1.20494 1.19186 1.16984 0.85112 0.87007 0.84264 1.90773 1.55001 1.70077 1.32197 1.22493 0.99380 0.96876 0.98436 1.20423 1.00243 0.98406 0.89493 1.18804 1.01830 0.89723 0.96807 1.22546 1.03325 1.01146 0.90186 1.69825 1.16462 1.04286 1.31639 1.24486 0.99412 1.01409 0.85483 1.43167 1.35119 1.19678 1.14836 0.74815 0.92711 0.93088 0.89504 0.90720 0.84254 0.91306 0.85044 0.84864 0.81990 0.78816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.37 -8.18 10.56 -39.25 -0.41 -8.60 16 3 C 0.49 12.14 6.23 36.00 0.22 12.36 16 4 O -0.51 -14.24 16.02 -18.75 -0.30 -14.54 16 5 C 0.15 3.55 5.10 -5.19 -0.03 3.52 16 6 N -0.41 -9.93 2.17 -119.42 -0.26 -10.19 16 7 C -0.32 -7.67 9.24 -15.05 -0.14 -7.80 16 8 H 0.11 2.34 5.76 -52.49 -0.30 2.04 16 9 C 0.03 0.78 5.15 -17.45 -0.09 0.69 16 10 N -0.87 -21.61 8.92 55.50 0.49 -21.11 16 11 Si 0.93 18.27 29.57 -169.99 -5.03 13.24 16 12 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 13 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 14 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 15 C 0.47 10.93 7.03 -15.07 -0.11 10.83 16 16 O -0.59 -14.70 12.67 5.06 0.06 -14.64 16 17 C -0.15 -2.89 9.20 -39.30 -0.36 -3.25 16 18 C -0.06 -1.06 9.98 -39.17 -0.39 -1.45 16 19 C 0.05 0.82 4.72 -83.71 -0.40 0.42 16 20 C -0.02 -0.40 11.92 -16.94 -0.20 -0.60 16 21 N -0.50 -9.58 11.19 -14.03 -0.16 -9.73 16 22 C 0.17 2.88 12.99 -90.41 -1.17 1.71 16 23 N -0.53 -8.84 4.43 -11.75 -0.05 -8.90 16 24 H 0.41 6.21 8.89 -40.82 -0.36 5.85 16 25 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 26 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.63 7.69 -51.93 -0.40 1.23 16 29 H 0.14 3.26 5.92 -51.93 -0.31 2.95 16 30 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 31 H 0.13 2.34 5.99 -52.49 -0.31 2.02 16 32 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.16 2.65 8.06 -52.49 -0.42 2.23 16 34 H 0.20 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -32.82 300.13 -6.08 -38.90 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -3.36 Total: 12.77 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: -1.59 Total: 18.27 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.03 Total: -49.93 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.65 Total: -37.77 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.82 -6.08 -38.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492758945.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.948 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds