Wall clock time and date at job start Tue Mar 31 2020 01:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00196 * 2 1 4 4 O 1.20822 * 119.99985 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99974 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.46783 * 184.45415 * 5 3 2 7 7 C 1.36650 * 119.99812 * 88.00257 * 6 5 3 8 8 H 1.07996 * 119.99768 * 310.14978 * 7 6 5 9 9 C 1.39158 * 119.99831 * 130.15279 * 7 6 5 10 10 N 1.31302 * 119.99586 * 159.43907 * 9 7 6 11 11 Si 1.86797 * 120.00280 * 339.44025 * 9 7 6 12 12 H 1.48503 * 109.46894 * 94.65918 * 11 9 7 13 13 H 1.48494 * 109.47376 * 214.66009 * 11 9 7 14 14 H 1.48503 * 109.47136 * 334.66513 * 11 9 7 15 15 C 1.34780 * 120.00168 * 267.99733 * 6 5 3 16 16 O 1.21788 * 119.99566 * 354.89500 * 15 6 5 17 17 C 1.41813 * 120.00089 * 174.89159 * 15 6 5 18 18 C 1.35369 * 120.00239 * 174.45917 * 17 15 6 19 19 C 1.46412 * 120.00469 * 180.02562 * 18 17 15 20 20 N 1.31946 * 125.88133 * 359.68445 * 19 18 17 21 21 C 1.33188 * 109.22060 * 179.86849 * 20 19 18 22 22 C 1.35509 * 108.45986 * 0.40504 * 21 20 19 23 23 N 1.36304 * 107.10526 * 359.75352 * 22 21 20 24 24 H 0.97008 * 126.51114 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47220 * 59.99563 * 1 2 3 26 26 H 1.09003 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47109 * 299.99260 * 1 2 3 28 28 H 1.08996 * 109.46787 * 64.45695 * 5 3 2 29 29 H 1.09000 * 109.47056 * 304.45584 * 5 3 2 30 30 H 0.96999 * 119.99555 * 180.02562 * 10 9 7 31 31 H 1.08005 * 119.99746 * 354.46346 * 17 15 6 32 32 H 1.08006 * 119.99413 * 359.97438 * 18 17 15 33 33 H 1.07998 * 125.76721 * 180.12693 * 21 20 19 34 34 H 1.07994 * 126.44922 * 179.78401 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9820 2.6754 0.1068 7 6 4.1415 3.2483 1.3371 8 1 3.3624 3.1587 2.0796 9 6 5.3078 3.9473 1.6331 10 7 5.3189 4.8203 2.6139 11 14 6.8575 3.6438 0.6353 12 1 6.9470 4.6458 -0.4570 13 1 8.0460 3.7654 1.5173 14 1 6.8114 2.2788 0.0522 15 6 4.2071 3.3990 -1.0078 16 8 4.1559 2.8648 -2.1011 17 6 4.5035 4.7822 -0.9075 18 6 4.8395 5.4844 -2.0149 19 6 5.1461 6.9124 -1.9113 20 7 5.1251 7.6295 -0.8040 21 6 5.4603 8.8865 -1.0892 22 6 5.6941 8.9766 -2.4210 23 7 5.4979 7.7347 -2.9474 24 1 5.5904 7.4816 -3.8793 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 3.9520 0.8515 -0.9280 29 1 3.9600 0.7130 0.8465 30 1 6.1318 5.3078 2.8200 31 1 4.4611 5.2752 0.0525 32 1 4.8824 4.9911 -2.9748 33 1 5.5294 9.6979 -0.3799 34 1 5.9821 9.8650 -2.9632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493352428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:05 Heat of formation + Delta-G solvation = -18.959392 kcal Electronic energy + Delta-G solvation = -21638.376508 eV Core-core repulsion = 18153.251109 eV Total energy + Delta-G solvation = -3485.125399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55532 -40.07812 -38.92546 -35.99738 -34.82160 -33.23334 -32.26502 -32.06249 -29.33255 -28.19018 -26.64954 -24.75157 -23.30006 -21.35463 -20.93794 -19.99810 -19.05640 -17.53344 -17.28376 -17.08044 -16.26244 -15.94055 -15.51022 -15.10021 -14.68936 -14.37416 -13.85891 -13.63279 -13.60510 -13.18934 -12.89106 -12.85704 -12.70863 -12.27359 -11.73314 -11.58084 -11.34506 -11.02033 -10.74027 -10.40914 -10.20665 -10.01567 -9.88812 -9.67097 -9.44247 -9.14599 -8.81703 -7.91618 -7.52631 -6.55245 -4.26953 1.35161 2.62094 2.82022 3.08671 3.17100 3.27667 3.28309 3.30661 3.64900 4.11231 4.30614 4.39502 4.86114 4.87376 5.22634 5.32599 5.40331 5.41967 5.53898 5.65683 5.75232 5.78294 5.99824 6.02425 6.22563 6.44565 6.80079 6.84361 7.02510 7.19842 7.44174 7.57338 7.60537 8.33732 8.37377 8.39982 8.83575 9.08778 9.50822 10.51736 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.005827 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.743741 B = 4803.757837 C = 5466.790227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.445 3.555 4 O -0.490 6.490 5 C 0.114 3.886 6 N -0.433 5.433 7 C -0.351 4.351 8 H 0.104 0.896 9 C 0.087 3.913 10 N -0.832 5.832 11 Si 0.848 3.152 12 H -0.254 1.254 13 H -0.279 1.279 14 H -0.261 1.261 15 C 0.507 3.493 16 O -0.599 6.599 17 C -0.106 4.106 18 C -0.080 4.080 19 C 0.242 3.758 20 N -0.461 5.461 21 C -0.025 4.025 22 C -0.064 4.064 23 N -0.566 5.566 24 H 0.418 0.582 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.282 0.718 31 H 0.163 0.837 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 0.086 -7.486 7.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.286 3.714 4 O -0.375 6.375 5 C -0.011 4.011 6 N -0.152 5.152 7 C -0.478 4.478 8 H 0.122 0.878 9 C -0.125 4.125 10 N -0.464 5.464 11 Si 0.672 3.328 12 H -0.178 1.178 13 H -0.205 1.205 14 H -0.185 1.185 15 C 0.301 3.699 16 O -0.486 6.486 17 C -0.130 4.130 18 C -0.102 4.102 19 C -0.016 4.016 20 N -0.180 5.180 21 C -0.176 4.176 22 C -0.199 4.199 23 N -0.168 5.168 24 H 0.256 0.744 25 H 0.076 0.924 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.152 0.848 33 H 0.186 0.814 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.775 0.008 -7.032 7.075 hybrid contribution 0.886 0.392 -1.447 1.741 sum 0.112 0.400 -8.479 8.489 Atomic orbital electron populations 1.23133 0.77490 1.02841 1.02280 1.86504 1.22646 1.34408 1.84957 1.24791 0.93119 0.81141 0.72368 1.90658 1.66736 1.36267 1.43872 1.21061 0.86250 0.88100 1.05706 1.43251 1.58479 1.06896 1.06561 1.19005 1.03747 1.34362 0.90697 0.87812 1.25589 0.97698 0.94083 0.95156 1.69660 1.29490 1.19250 1.28010 0.87182 0.83589 0.80826 0.81243 1.17836 1.20500 1.18484 1.17262 0.81274 0.87492 0.83822 1.90665 1.57971 1.73027 1.26967 1.22511 0.95127 0.94550 1.00848 1.20856 1.02854 0.86875 0.99657 1.21732 1.04004 0.93237 0.82587 1.70579 1.18243 1.03597 1.25544 1.22435 1.06067 0.95355 0.93773 1.22788 1.11900 0.88853 0.96392 1.43418 1.53312 1.09062 1.11015 0.74394 0.92370 0.88697 0.92191 0.86854 0.86443 0.90723 0.82002 0.84786 0.81364 0.80795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.23 10.56 -39.25 -0.41 -6.65 16 3 C 0.45 9.12 8.01 36.01 0.29 9.41 16 4 O -0.49 -11.74 16.18 -18.75 -0.30 -12.05 16 5 C 0.11 2.33 6.03 -5.19 -0.03 2.30 16 6 N -0.43 -10.63 1.48 -119.29 -0.18 -10.81 16 7 C -0.35 -9.23 9.09 -15.06 -0.14 -9.37 16 8 H 0.10 2.93 8.06 -52.49 -0.42 2.50 16 9 C 0.09 2.28 3.66 -17.44 -0.06 2.21 16 10 N -0.83 -22.77 13.95 55.51 0.77 -21.99 16 11 Si 0.85 20.38 25.20 -169.99 -4.28 16.10 16 12 H -0.25 -6.16 6.17 56.52 0.35 -5.81 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.26 -6.23 7.11 56.52 0.40 -5.82 16 15 C 0.51 12.76 5.79 -14.89 -0.09 12.68 16 16 O -0.60 -15.36 15.65 5.11 0.08 -15.28 16 17 C -0.11 -2.58 5.63 -39.24 -0.22 -2.80 16 18 C -0.08 -1.67 9.43 -37.32 -0.35 -2.02 16 19 C 0.24 4.69 7.88 -154.49 -1.22 3.47 16 20 N -0.46 -9.65 10.76 -11.43 -0.12 -9.77 16 21 C -0.02 -0.40 11.84 -17.94 -0.21 -0.61 16 22 C -0.06 -0.83 12.03 -16.54 -0.20 -1.03 16 23 N -0.57 -8.03 6.22 -10.76 -0.07 -8.10 16 24 H 0.42 4.32 8.96 -40.82 -0.37 3.95 16 25 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.11 2.18 7.30 -51.93 -0.38 1.80 16 29 H 0.12 2.08 8.05 -51.93 -0.42 1.66 16 30 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.16 4.31 5.41 -52.48 -0.28 4.02 16 32 H 0.13 2.55 7.47 -52.48 -0.39 2.16 16 33 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -34.21 304.43 -4.65 -38.86 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.56 Total: 9.31 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -1.17 Total: 15.80 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.41 Total: -50.67 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.64 Total: -33.97 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.28 Total: 16.10 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.21 -4.65 -38.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493352428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.903 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds