Wall clock time and date at job start Tue Mar 31 2020 01:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34229 * 117.00196 * 2 1 4 4 O 1.20822 * 119.99985 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99974 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.46783 * 184.45415 * 5 3 2 7 7 C 1.36650 * 119.99812 * 88.00257 * 6 5 3 8 8 H 1.07996 * 119.99768 * 310.14978 * 7 6 5 9 9 C 1.39158 * 119.99831 * 130.15279 * 7 6 5 10 10 N 1.31302 * 119.99586 * 159.43907 * 9 7 6 11 11 Si 1.86797 * 120.00280 * 339.44025 * 9 7 6 12 12 H 1.48503 * 109.46894 * 94.65918 * 11 9 7 13 13 H 1.48494 * 109.47376 * 214.66009 * 11 9 7 14 14 H 1.48503 * 109.47136 * 334.66513 * 11 9 7 15 15 C 1.34780 * 120.00168 * 267.99733 * 6 5 3 16 16 O 1.21788 * 119.99566 * 354.89500 * 15 6 5 17 17 C 1.41813 * 120.00089 * 174.89159 * 15 6 5 18 18 C 1.35369 * 120.00239 * 174.45917 * 17 15 6 19 19 C 1.46412 * 120.00469 * 180.02562 * 18 17 15 20 20 N 1.31946 * 125.88133 * 359.68445 * 19 18 17 21 21 C 1.33188 * 109.22060 * 179.86849 * 20 19 18 22 22 C 1.35509 * 108.45986 * 0.40504 * 21 20 19 23 23 N 1.36304 * 107.10526 * 359.75352 * 22 21 20 24 24 H 0.97008 * 126.51114 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47220 * 59.99563 * 1 2 3 26 26 H 1.09003 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47109 * 299.99260 * 1 2 3 28 28 H 1.08996 * 109.46787 * 64.45695 * 5 3 2 29 29 H 1.09000 * 109.47056 * 304.45584 * 5 3 2 30 30 H 0.96999 * 119.99555 * 180.02562 * 10 9 7 31 31 H 1.08005 * 119.99746 * 354.46346 * 17 15 6 32 32 H 1.08006 * 119.99413 * 359.97438 * 18 17 15 33 33 H 1.07998 * 125.76721 * 180.12693 * 21 20 19 34 34 H 1.07994 * 126.44922 * 179.78401 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9820 2.6754 0.1068 7 6 4.1415 3.2483 1.3371 8 1 3.3624 3.1587 2.0796 9 6 5.3078 3.9473 1.6331 10 7 5.3189 4.8203 2.6139 11 14 6.8575 3.6438 0.6353 12 1 6.9470 4.6458 -0.4570 13 1 8.0460 3.7654 1.5173 14 1 6.8114 2.2788 0.0522 15 6 4.2071 3.3990 -1.0078 16 8 4.1559 2.8648 -2.1011 17 6 4.5035 4.7822 -0.9075 18 6 4.8395 5.4844 -2.0149 19 6 5.1461 6.9124 -1.9113 20 7 5.1251 7.6295 -0.8040 21 6 5.4603 8.8865 -1.0892 22 6 5.6941 8.9766 -2.4210 23 7 5.4979 7.7347 -2.9474 24 1 5.5904 7.4816 -3.8793 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 3.9520 0.8515 -0.9280 29 1 3.9600 0.7130 0.8465 30 1 6.1318 5.3078 2.8200 31 1 4.4611 5.2752 0.0525 32 1 4.8824 4.9911 -2.9748 33 1 5.5294 9.6979 -0.3799 34 1 5.9821 9.8650 -2.9632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493352428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:05 Heat of formation + Delta-G solvation = -43.500855 kcal Electronic energy + Delta-G solvation = -21639.440705 eV Core-core repulsion = 18153.251109 eV Total energy + Delta-G solvation = -3486.189597 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.84979 -41.73581 -40.67304 -37.57573 -36.69247 -34.93626 -33.98063 -33.57371 -30.90288 -29.56884 -27.99801 -26.64620 -24.91173 -22.61788 -22.44593 -21.61502 -20.70710 -19.14160 -18.89249 -18.69608 -17.83526 -17.51403 -17.30268 -16.77562 -16.18179 -15.97220 -15.55910 -15.15258 -14.96402 -14.72502 -14.54074 -14.35175 -14.20234 -14.00989 -13.38043 -13.07563 -12.94465 -12.90234 -12.54998 -12.11437 -11.78612 -11.72346 -11.30256 -11.13445 -11.02282 -10.89414 -10.75196 -9.82388 -8.95286 -8.56644 -6.31763 -0.25793 1.20879 1.24750 1.28864 1.33153 1.40451 1.65998 2.06717 2.17282 2.18303 2.52329 2.69955 2.92768 3.49622 3.95934 4.00480 4.22015 4.32088 4.32997 4.33875 4.41472 4.44981 4.57954 4.63363 4.68050 5.03009 5.22668 5.31781 5.40026 5.56723 5.65397 5.77372 6.29017 6.45119 6.77284 6.84630 7.10896 7.15556 7.58927 8.53643 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.005827 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.743741 B = 4803.757837 C = 5466.790227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.451 3.549 4 O -0.534 6.534 5 C 0.107 3.893 6 N -0.445 5.445 7 C -0.354 4.354 8 H 0.071 0.929 9 C 0.064 3.936 10 N -0.870 5.870 11 Si 0.897 3.103 12 H -0.259 1.259 13 H -0.272 1.272 14 H -0.257 1.257 15 C 0.509 3.491 16 O -0.611 6.611 17 C -0.164 4.164 18 C -0.031 4.031 19 C 0.187 3.813 20 N -0.504 5.504 21 C -0.065 4.065 22 C -0.007 4.007 23 N -0.541 5.541 24 H 0.439 0.561 25 H 0.055 0.945 26 H 0.141 0.859 27 H 0.055 0.945 28 H 0.129 0.871 29 H 0.143 0.857 30 H 0.284 0.716 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.189 0.811 34 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 0.794 -10.025 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.294 3.706 4 O -0.423 6.423 5 C -0.017 4.017 6 N -0.164 5.164 7 C -0.482 4.482 8 H 0.089 0.911 9 C -0.145 4.145 10 N -0.503 5.503 11 Si 0.720 3.280 12 H -0.184 1.184 13 H -0.198 1.198 14 H -0.180 1.180 15 C 0.304 3.696 16 O -0.500 6.500 17 C -0.189 4.189 18 C -0.053 4.053 19 C -0.069 4.069 20 N -0.224 5.224 21 C -0.216 4.216 22 C -0.144 4.144 23 N -0.145 5.145 24 H 0.281 0.719 25 H 0.074 0.926 26 H 0.159 0.841 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.161 0.839 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.171 0.829 33 H 0.206 0.794 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.218 0.644 -9.592 9.616 hybrid contribution 0.487 0.408 -0.826 1.042 sum 0.705 1.052 -10.418 10.495 Atomic orbital electron populations 1.23535 0.75080 1.05806 1.02047 1.86480 1.24864 1.32114 1.84046 1.24740 0.93182 0.81448 0.71268 1.90642 1.67609 1.37874 1.46163 1.21294 0.86628 0.86237 1.07571 1.43233 1.59104 1.08447 1.05621 1.18650 1.03146 1.35643 0.90745 0.91140 1.25938 0.99557 0.93330 0.95633 1.69733 1.30119 1.20421 1.30025 0.86443 0.80967 0.80511 0.80085 1.18395 1.19789 1.18033 1.17466 0.80439 0.87879 0.83810 1.90621 1.58839 1.73466 1.27082 1.22177 1.01241 0.94515 1.00926 1.21167 0.97078 0.87886 0.99186 1.21334 1.08483 0.93105 0.84016 1.70457 1.18395 1.05989 1.27556 1.23019 1.07848 0.94491 0.96240 1.23703 1.06037 0.89370 0.95335 1.43388 1.51077 1.08727 1.11321 0.71874 0.92598 0.84066 0.92566 0.85348 0.83906 0.90579 0.84933 0.82866 0.79400 0.74852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.91 16 2 O -0.36 -11.80 10.56 -51.41 -0.54 -12.34 16 3 C 0.45 18.67 8.01 71.24 0.57 19.24 16 4 O -0.53 -26.43 16.18 21.98 0.36 -26.07 16 5 C 0.11 4.39 6.03 85.64 0.52 4.91 16 6 N -0.45 -22.45 1.48 -649.51 -0.96 -23.41 16 7 C -0.35 -19.55 9.09 84.16 0.77 -18.78 16 8 H 0.07 4.27 8.06 -2.91 -0.02 4.24 16 9 C 0.06 3.52 3.66 84.99 0.31 3.83 16 10 N -0.87 -49.72 13.95 21.70 0.30 -49.42 16 11 Si 0.90 42.98 25.20 68.60 1.73 44.71 16 12 H -0.26 -12.54 6.17 99.48 0.61 -11.92 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.51 26.11 5.79 85.12 0.49 26.60 16 16 O -0.61 -31.35 15.65 -4.63 -0.07 -31.42 16 17 C -0.16 -8.19 5.63 22.49 0.13 -8.07 16 18 C -0.03 -1.28 9.43 23.74 0.22 -1.06 16 19 C 0.19 7.01 7.88 135.83 1.07 8.08 16 20 N -0.50 -20.92 10.76 -190.07 -2.05 -22.97 16 21 C -0.06 -1.95 11.84 83.86 0.99 -0.96 16 22 C -0.01 -0.15 12.03 83.37 1.00 0.85 16 23 N -0.54 -13.26 6.22 -187.95 -1.17 -14.42 16 24 H 0.44 7.01 8.96 -92.70 -0.83 6.18 16 25 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 26 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 28 H 0.13 4.85 7.30 -2.39 -0.02 4.84 16 29 H 0.14 5.02 8.05 -2.39 -0.02 5.00 16 30 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.13 7.44 5.41 -2.91 -0.02 7.43 16 32 H 0.15 5.61 7.47 -2.91 -0.02 5.59 16 33 H 0.19 4.59 8.06 -2.91 -0.02 4.56 16 34 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -79.38 304.43 5.09 -74.29 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.22 Total: 24.50 kcal Atomic # 6 Polarization: 29.29 SS G_CDS: 7.27 Total: 36.56 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -3.87 Total: -110.22 kcal Atomic # 8 Polarization: -69.58 SS G_CDS: -0.26 Total: -69.84 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.73 Total: 44.71 kcal Total: -79.38 5.09 -74.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493352428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.788 kcal (2) G-P(sol) polarization free energy of solvation -79.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds