Wall clock time and date at job start Tue Mar 31 2020 00:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38970 * 119.99974 * 2 1 4 4 C 1.39270 * 119.92182 * 6.58267 * 3 2 1 5 5 C 1.36552 * 120.20348 * 180.27693 * 4 3 2 6 6 C 1.39909 * 120.04752 * 359.45538 * 5 4 3 7 7 C 1.47341 * 120.08081 * 180.25541 * 6 5 4 8 8 O 1.21521 * 120.00362 * 146.43202 * 7 6 5 9 9 N 1.34778 * 119.99257 * 326.43068 * 7 6 5 10 10 C 1.46503 * 120.00425 * 353.82643 * 9 7 6 11 11 C 1.33302 * 119.99692 * 173.83442 * 9 7 6 12 12 H 1.07999 * 119.99870 * 17.11127 * 11 9 7 13 13 C 1.46785 * 120.00017 * 197.11749 * 11 9 7 14 14 N 1.29318 * 119.99732 * 11.79113 * 13 11 9 15 15 Si 1.86797 * 120.00255 * 191.78446 * 13 11 9 16 16 H 1.48502 * 109.46765 * 90.00320 * 15 13 11 17 17 H 1.48496 * 109.47534 * 209.99971 * 15 13 11 18 18 H 1.48505 * 109.47178 * 330.00674 * 15 13 11 19 19 C 1.39911 * 119.84751 * 0.26842 * 6 5 4 20 20 C 1.37610 * 119.79687 * 0.02562 * 19 6 5 21 21 N 1.48019 * 120.02715 * 179.97438 * 20 19 6 22 22 O 1.31703 * 119.99894 * 5.95619 * 21 20 19 23 23 O 1.31698 * 120.00162 * 185.95449 * 21 20 19 24 24 H 1.08996 * 109.46873 * 60.00386 * 1 2 3 25 25 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 299.99852 * 1 2 3 27 27 H 0.97001 * 120.00444 * 180.02562 * 2 1 3 28 28 H 1.07998 * 119.90146 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.97835 * 179.72362 * 5 4 3 30 30 H 1.09002 * 109.46898 * 93.43019 * 10 9 7 31 31 H 1.08996 * 109.47385 * 213.43357 * 10 9 7 32 32 H 1.08998 * 109.46701 * 333.43566 * 10 9 7 33 33 H 0.97002 * 119.99653 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.10135 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1598 1.2035 0.0000 4 6 1.4687 2.4047 0.1384 5 6 2.1451 3.5909 0.1335 6 6 3.5378 3.6027 0.0006 7 6 4.2689 4.8819 0.0009 8 8 5.3826 4.9452 0.4831 9 7 3.7024 5.9818 -0.5337 10 6 2.4201 5.8784 -1.2346 11 6 4.3090 7.1638 -0.4248 12 1 5.3563 7.2114 -0.1656 13 6 3.5535 8.4006 -0.6571 14 7 2.2635 8.3642 -0.7411 15 14 4.4552 10.0272 -0.8313 16 1 4.7898 10.2572 -2.2597 17 1 3.5877 11.1290 -0.3426 18 1 5.7050 9.9887 -0.0301 19 6 4.2348 2.3969 -0.1327 20 6 3.5462 1.2054 -0.1331 21 7 4.2783 -0.0732 -0.2744 22 8 5.5953 -0.0805 -0.2820 23 8 3.6129 -1.2035 -0.3926 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 0.3941 2.3983 0.2458 29 1 1.6051 4.5205 0.2366 30 1 1.6076 6.0862 -0.5383 31 1 2.3928 6.6003 -2.0507 32 1 2.3058 4.8715 -1.6361 33 1 1.7643 9.1815 -0.8950 34 1 5.3098 2.4012 -0.2359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522273154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:27 Heat of formation + Delta-G solvation = 51.035394 kcal Electronic energy + Delta-G solvation = -21509.742282 eV Core-core repulsion = 18027.652085 eV Total energy + Delta-G solvation = -3482.090197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.52755 -38.81406 -37.80260 -35.82965 -34.87386 -34.11890 -32.36129 -31.57423 -30.11871 -26.94627 -26.91896 -25.73226 -24.51875 -22.47615 -22.06540 -19.90943 -18.10836 -18.02338 -17.51809 -17.19965 -16.30503 -15.86436 -15.66860 -14.90980 -14.68502 -14.52279 -14.32354 -14.15305 -13.68208 -13.37139 -12.71667 -12.55083 -12.48315 -12.09498 -11.68749 -11.45438 -11.38096 -11.10358 -11.01303 -10.71147 -10.62128 -10.57449 -10.45572 -10.12775 -9.44735 -9.23393 -8.57265 -8.16063 -7.76956 -6.71754 -3.81387 -0.42497 1.12842 1.33907 1.36776 2.97430 3.07328 3.10660 3.15471 3.29366 3.93689 4.07646 4.31649 4.58098 4.78774 4.85691 4.87463 5.10800 5.14373 5.19077 5.30181 5.38971 5.62910 5.70917 5.96245 6.08199 6.15268 6.40599 6.46122 6.61413 6.81226 6.93111 6.95352 7.10041 7.43166 7.87869 8.27110 8.99093 9.23032 9.92407 10.29498 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.004542 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.301477 B = 6163.557432 C = 7011.355252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.717 5.717 3 C 0.285 3.715 4 C -0.211 4.211 5 C 0.003 3.997 6 C -0.139 4.139 7 C 0.449 3.551 8 O -0.593 6.593 9 N -0.403 5.403 10 C 0.096 3.904 11 C -0.341 4.341 12 H 0.111 0.889 13 C 0.041 3.959 14 N -0.842 5.842 15 Si 0.932 3.068 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.262 1.262 19 C 0.022 3.978 20 C -0.086 4.086 21 N 0.019 4.981 22 O -0.180 6.180 23 O -0.245 6.245 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.419 0.581 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.279 0.721 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.486 -9.156 -0.768 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.359 5.359 3 C 0.171 3.829 4 C -0.234 4.234 5 C -0.017 4.017 6 C -0.146 4.146 7 C 0.240 3.760 8 O -0.480 6.480 9 N -0.116 5.116 10 C -0.047 4.047 11 C -0.470 4.470 12 H 0.129 0.871 13 C -0.171 4.171 14 N -0.476 5.476 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.186 1.186 19 C 0.000 4.000 20 C -0.182 4.182 21 N 0.479 4.521 22 O -0.371 6.371 23 O -0.412 6.412 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.270 0.730 28 H 0.164 0.836 29 H 0.173 0.827 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.673 -8.656 -0.553 12.992 hybrid contribution 0.399 0.125 -0.185 0.458 sum -9.273 -8.531 -0.738 12.622 Atomic orbital electron populations 1.21786 0.79497 1.03357 1.01964 1.45915 1.07292 1.07084 1.75572 1.17736 0.87644 0.88593 0.88955 1.20423 1.00763 0.89507 1.12673 1.21846 0.93685 0.98986 0.87223 1.20100 0.93254 0.94385 1.06826 1.17312 0.88409 0.83253 0.87002 1.90602 1.20152 1.84850 1.52433 1.42403 1.18929 1.06869 1.43443 1.21980 0.86475 0.98277 0.97993 1.20629 0.96147 0.81017 1.49211 0.87145 1.26899 0.94712 1.00071 0.95446 1.69009 1.07073 1.30546 1.40962 0.85813 0.79844 0.79423 0.79146 1.19913 1.20687 1.18645 1.20921 1.01929 0.87987 0.89114 1.19741 0.89656 0.82071 1.26687 1.50254 1.03186 1.03337 0.95307 1.96287 0.88596 1.95688 1.56570 1.95825 1.66428 1.18549 1.60419 0.91878 0.90029 0.92006 0.73046 0.83634 0.82671 0.91993 0.90418 0.94695 0.90916 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 9.98 59.84 0.60 1.16 16 2 N -0.72 -8.23 5.71 -65.40 -0.37 -8.60 16 3 C 0.29 3.95 6.64 -83.86 -0.56 3.39 16 4 C -0.21 -2.62 9.24 -39.81 -0.37 -2.99 16 5 C 0.00 0.04 7.55 -39.57 -0.30 -0.25 16 6 C -0.14 -2.63 5.21 -104.94 -0.55 -3.18 16 7 C 0.45 10.77 7.29 -12.56 -0.09 10.68 16 8 O -0.59 -16.48 16.37 5.35 0.09 -16.40 16 9 N -0.40 -9.72 2.93 -121.89 -0.36 -10.08 16 10 C 0.10 1.92 7.07 59.85 0.42 2.35 16 11 C -0.34 -8.93 9.63 -13.46 -0.13 -9.06 16 12 H 0.11 3.10 7.32 -52.49 -0.38 2.72 16 13 C 0.04 0.98 5.30 -15.16 -0.08 0.89 16 14 N -0.84 -19.71 10.41 56.00 0.58 -19.13 16 15 Si 0.93 18.96 29.66 -169.99 -5.04 13.91 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 19 C 0.02 0.39 9.13 -39.18 -0.36 0.04 16 20 C -0.09 -1.43 6.89 -79.79 -0.55 -1.98 16 21 N 0.02 0.33 4.98 34.04 0.17 0.50 16 22 O -0.18 -3.45 19.17 -31.57 -0.61 -4.05 16 23 O -0.24 -4.11 16.33 -31.57 -0.52 -4.63 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.38 7.68 -51.93 -0.40 -0.01 16 27 H 0.42 5.18 5.13 -41.66 -0.21 4.97 16 28 H 0.15 1.31 6.69 -52.49 -0.35 0.96 16 29 H 0.16 2.27 5.31 -52.49 -0.28 1.99 16 30 H 0.06 1.21 6.40 -51.93 -0.33 0.87 16 31 H 0.08 1.66 6.75 -51.93 -0.35 1.31 16 32 H 0.03 0.59 5.83 -51.93 -0.30 0.29 16 33 H 0.28 6.08 8.26 -40.82 -0.34 5.74 16 34 H 0.16 3.03 7.51 -52.49 -0.39 2.63 16 LS Contribution 293.94 15.07 4.43 4.43 Total: -1.00 -30.31 293.94 -6.56 -36.87 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -2.98 Total: 6.13 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.96 Total: 1.04 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.02 Total: -37.31 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.03 Total: -25.08 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.04 Total: 13.91 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.31 -6.56 -36.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522273154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.909 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds