Wall clock time and date at job start Tue Mar 31 2020 00:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38970 * 119.99974 * 2 1 4 4 C 1.39270 * 119.92182 * 6.58267 * 3 2 1 5 5 C 1.36552 * 120.20348 * 180.27693 * 4 3 2 6 6 C 1.39909 * 120.04752 * 359.45538 * 5 4 3 7 7 C 1.47341 * 120.08081 * 180.25541 * 6 5 4 8 8 O 1.21521 * 120.00362 * 146.43202 * 7 6 5 9 9 N 1.34778 * 119.99257 * 326.43068 * 7 6 5 10 10 C 1.46503 * 120.00425 * 353.82643 * 9 7 6 11 11 C 1.33302 * 119.99692 * 173.83442 * 9 7 6 12 12 H 1.07999 * 119.99870 * 17.11127 * 11 9 7 13 13 C 1.46785 * 120.00017 * 197.11749 * 11 9 7 14 14 N 1.29318 * 119.99732 * 11.79113 * 13 11 9 15 15 Si 1.86797 * 120.00255 * 191.78446 * 13 11 9 16 16 H 1.48502 * 109.46765 * 90.00320 * 15 13 11 17 17 H 1.48496 * 109.47534 * 209.99971 * 15 13 11 18 18 H 1.48505 * 109.47178 * 330.00674 * 15 13 11 19 19 C 1.39911 * 119.84751 * 0.26842 * 6 5 4 20 20 C 1.37610 * 119.79687 * 0.02562 * 19 6 5 21 21 N 1.48019 * 120.02715 * 179.97438 * 20 19 6 22 22 O 1.31703 * 119.99894 * 5.95619 * 21 20 19 23 23 O 1.31698 * 120.00162 * 185.95449 * 21 20 19 24 24 H 1.08996 * 109.46873 * 60.00386 * 1 2 3 25 25 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 299.99852 * 1 2 3 27 27 H 0.97001 * 120.00444 * 180.02562 * 2 1 3 28 28 H 1.07998 * 119.90146 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.97835 * 179.72362 * 5 4 3 30 30 H 1.09002 * 109.46898 * 93.43019 * 10 9 7 31 31 H 1.08996 * 109.47385 * 213.43357 * 10 9 7 32 32 H 1.08998 * 109.46701 * 333.43566 * 10 9 7 33 33 H 0.97002 * 119.99653 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.10135 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1598 1.2035 0.0000 4 6 1.4687 2.4047 0.1384 5 6 2.1451 3.5909 0.1335 6 6 3.5378 3.6027 0.0006 7 6 4.2689 4.8819 0.0009 8 8 5.3826 4.9452 0.4831 9 7 3.7024 5.9818 -0.5337 10 6 2.4201 5.8784 -1.2346 11 6 4.3090 7.1638 -0.4248 12 1 5.3563 7.2114 -0.1656 13 6 3.5535 8.4006 -0.6571 14 7 2.2635 8.3642 -0.7411 15 14 4.4552 10.0272 -0.8313 16 1 4.7898 10.2572 -2.2597 17 1 3.5877 11.1290 -0.3426 18 1 5.7050 9.9887 -0.0301 19 6 4.2348 2.3969 -0.1327 20 6 3.5462 1.2054 -0.1331 21 7 4.2783 -0.0732 -0.2744 22 8 5.5953 -0.0805 -0.2820 23 8 3.6129 -1.2035 -0.3926 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 0.3941 2.3983 0.2458 29 1 1.6051 4.5205 0.2366 30 1 1.6076 6.0862 -0.5383 31 1 2.3928 6.6003 -2.0507 32 1 2.3058 4.8715 -1.6361 33 1 1.7643 9.1815 -0.8950 34 1 5.3098 2.4012 -0.2359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522273154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:27 Heat of formation + Delta-G solvation = 30.580174 kcal Electronic energy + Delta-G solvation = -21510.629287 eV Core-core repulsion = 18027.652085 eV Total energy + Delta-G solvation = -3482.977202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85329 -40.43165 -39.16213 -37.05862 -36.71687 -35.44230 -34.09672 -32.96686 -31.34258 -28.53122 -27.95129 -27.22437 -26.04964 -23.84733 -23.28638 -21.47249 -19.57937 -19.32123 -19.03017 -18.73783 -17.61567 -17.23819 -17.09709 -16.61205 -16.14004 -15.89894 -15.46392 -15.35400 -15.05298 -14.88157 -14.18280 -13.91944 -13.66433 -13.20808 -13.13318 -13.12147 -12.90089 -12.57824 -12.40465 -12.35099 -12.11835 -12.04717 -11.96358 -11.37963 -11.04949 -10.68133 -10.46357 -10.00883 -8.91964 -8.54746 -5.77150 -1.78139 -0.17966 0.04104 0.11066 1.35060 1.43501 1.52096 1.86095 2.06448 2.25702 2.45666 2.91870 3.04143 3.15073 3.60243 3.72890 3.86169 3.95792 4.31070 4.36798 4.46677 4.61576 4.67037 4.71862 4.80497 4.95655 5.00048 5.14922 5.18491 5.24538 5.34904 5.59166 5.77646 5.96952 6.36001 6.39474 7.13729 7.40021 8.09081 8.44593 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.004542 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.301477 B = 6163.557432 C = 7011.355252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.696 5.696 3 C 0.304 3.696 4 C -0.179 4.179 5 C 0.013 3.987 6 C -0.157 4.157 7 C 0.436 3.564 8 O -0.650 6.650 9 N -0.412 5.412 10 C 0.104 3.896 11 C -0.395 4.395 12 H 0.071 0.929 13 C 0.022 3.978 14 N -0.842 5.842 15 Si 0.990 3.010 16 H -0.265 1.265 17 H -0.262 1.262 18 H -0.279 1.279 19 C 0.011 3.989 20 C -0.098 4.098 21 N 0.024 4.976 22 O -0.267 6.267 23 O -0.211 6.211 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.417 0.583 28 H 0.200 0.800 29 H 0.167 0.833 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.291 0.709 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.505 -9.831 -1.040 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.333 5.333 3 C 0.184 3.816 4 C -0.201 4.201 5 C -0.008 4.008 6 C -0.163 4.163 7 C 0.228 3.772 8 O -0.542 6.542 9 N -0.125 5.125 10 C -0.038 4.038 11 C -0.524 4.524 12 H 0.089 0.911 13 C -0.190 4.190 14 N -0.474 5.474 15 Si 0.813 3.187 16 H -0.190 1.190 17 H -0.186 1.186 18 H -0.204 1.204 19 C -0.010 4.010 20 C -0.195 4.195 21 N 0.474 4.526 22 O -0.435 6.435 23 O -0.389 6.389 24 H 0.101 0.899 25 H 0.124 0.876 26 H 0.103 0.897 27 H 0.266 0.734 28 H 0.217 0.783 29 H 0.184 0.816 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.589 -9.337 -0.846 17.342 hybrid contribution 1.551 0.146 -0.080 1.560 sum -13.038 -9.191 -0.925 15.979 Atomic orbital electron populations 1.22303 0.75918 1.05947 1.03940 1.46302 1.09646 1.05945 1.71450 1.17965 0.86368 0.90260 0.87011 1.20848 1.02767 0.87178 1.09348 1.21880 0.91481 1.00793 0.86631 1.19654 0.94936 0.91758 1.09986 1.18102 0.88062 0.84961 0.86038 1.90538 1.22805 1.86204 1.54682 1.42569 1.20067 1.06295 1.43558 1.22017 0.84775 0.99689 0.97307 1.20414 0.95423 0.83185 1.53398 0.91089 1.27487 0.95555 1.01823 0.94154 1.68994 1.07324 1.31927 1.39190 0.84995 0.78368 0.76184 0.79166 1.18970 1.18595 1.20380 1.20608 1.00860 0.89007 0.90533 1.19786 0.90765 0.80953 1.28015 1.50354 1.03120 1.03628 0.95468 1.96313 0.89236 1.95918 1.62039 1.95773 1.66237 1.19014 1.57845 0.89862 0.87567 0.89701 0.73381 0.78287 0.81567 0.91007 0.91967 0.91586 0.89712 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 9.98 127.77 1.27 1.70 16 2 N -0.70 -12.12 5.71 -360.82 -2.06 -14.18 16 3 C 0.30 7.15 6.64 38.51 0.26 7.40 16 4 C -0.18 -3.46 9.24 22.12 0.20 -3.26 16 5 C 0.01 0.35 7.55 22.28 0.17 0.51 16 6 C -0.16 -6.03 5.21 -20.07 -0.10 -6.14 16 7 C 0.44 22.15 7.29 86.64 0.63 22.78 16 8 O -0.65 -39.48 16.37 -3.78 -0.06 -39.54 16 9 N -0.41 -20.64 2.93 -657.83 -1.93 -22.57 16 10 C 0.10 4.09 7.07 127.77 0.90 4.99 16 11 C -0.40 -21.83 9.63 86.71 0.83 -21.00 16 12 H 0.07 4.37 7.32 -2.91 -0.02 4.35 16 13 C 0.02 1.07 5.30 87.30 0.46 1.53 16 14 N -0.84 -38.44 10.41 23.26 0.24 -38.20 16 15 Si 0.99 38.97 29.66 68.60 2.03 41.01 16 16 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 17 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 19 C 0.01 0.44 9.13 22.53 0.21 0.64 16 20 C -0.10 -3.18 6.89 36.48 0.25 -2.93 16 21 N 0.02 0.86 4.98 -46.22 -0.23 0.63 16 22 O -0.27 -11.18 19.17 3.51 0.07 -11.11 16 23 O -0.21 -6.72 16.33 3.52 0.06 -6.67 16 24 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.08 0.36 7.68 -2.39 -0.02 0.34 16 27 H 0.42 8.34 5.13 -106.06 -0.54 7.79 16 28 H 0.20 1.84 6.69 -2.91 -0.02 1.82 16 29 H 0.17 4.25 5.31 -2.91 -0.02 4.24 16 30 H 0.07 2.65 6.40 -2.39 -0.02 2.63 16 31 H 0.06 2.61 6.75 -2.39 -0.02 2.60 16 32 H 0.07 2.13 5.83 -2.39 -0.01 2.11 16 33 H 0.29 12.03 8.26 -92.71 -0.77 11.27 16 34 H 0.13 5.60 7.51 -2.91 -0.02 5.58 16 Total: -1.00 -73.79 293.94 3.84 -69.94 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.63 Total: 14.44 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.09 Total: 6.24 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -3.97 Total: -74.32 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: 0.06 Total: -57.32 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.01 kcal Total: -73.79 3.84 -69.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522273154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.525 kcal (2) G-P(sol) polarization free energy of solvation -73.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds