Wall clock time and date at job start Tue Mar 31 2020 00:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30825 * 125.96432 * 2 1 4 4 C 1.33251 * 109.82850 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.52599 * 179.97438 * 4 3 2 6 6 F 1.39904 * 109.47437 * 15.02498 * 5 4 3 7 7 F 1.39903 * 109.46874 * 135.02617 * 5 4 3 8 8 F 1.39904 * 109.46945 * 255.02795 * 5 4 3 9 9 N 1.30709 * 108.94310 * 0.02562 * 4 3 2 10 10 N 1.34434 * 125.95434 * 179.97438 * 2 1 3 11 11 C 1.46499 * 126.82568 * 359.76629 * 10 2 1 12 12 C 1.53005 * 109.46716 * 90.00053 * 11 10 2 13 13 O 1.42904 * 109.46546 * 179.97438 * 12 11 10 14 14 C 1.42900 * 113.99707 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47452 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99531 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00425 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00165 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47167 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47157 * 120.00283 * 19 17 15 22 22 H 1.48505 * 109.46924 * 240.00448 * 19 17 15 23 23 H 1.09003 * 109.46963 * 270.04529 * 1 2 3 24 24 H 1.09000 * 109.46797 * 30.03443 * 1 2 3 25 25 H 1.08988 * 109.47589 * 150.03703 * 1 2 3 26 26 H 1.08999 * 109.47205 * 209.99603 * 11 10 2 27 27 H 1.08998 * 109.47316 * 330.00276 * 11 10 2 28 28 H 1.08990 * 109.47183 * 299.99684 * 12 11 10 29 29 H 1.09003 * 109.47066 * 60.00552 * 12 11 10 30 30 H 1.09004 * 109.47263 * 300.00183 * 14 13 12 31 31 H 1.09004 * 109.47488 * 60.00059 * 14 13 12 32 32 H 0.97005 * 120.00321 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6885 0.0006 5 6 4.7374 1.6233 0.0002 6 9 4.3129 2.9121 0.3411 7 9 5.6817 1.1813 0.9330 8 9 5.3148 1.6444 -1.2739 9 7 3.6194 -0.6170 0.0004 10 7 2.2963 -1.0882 0.0005 11 6 1.8626 -2.4875 0.0059 12 6 1.7069 -2.9787 -1.4348 13 8 1.2845 -4.3439 -1.4295 14 6 1.1087 -4.9029 -2.7328 15 6 0.6644 -6.3375 -2.6084 16 1 0.5292 -6.7781 -1.6316 17 6 0.4293 -7.0871 -3.7413 18 7 0.5933 -6.5505 -4.9307 19 14 -0.1222 -8.8652 -3.5870 20 1 -0.2320 -9.2266 -2.1508 21 1 -1.4449 -9.0318 -4.2414 22 1 0.8713 -9.7506 -4.2461 23 1 -0.3633 0.0008 1.0277 24 1 -0.3633 0.8897 -0.5144 25 1 -0.3634 -0.8902 -0.5132 26 1 2.6069 -3.0966 0.5189 27 1 0.9067 -2.5697 0.5231 28 1 0.9628 -2.3697 -1.9478 29 1 2.6630 -2.8966 -1.9520 30 1 0.3520 -4.3341 -3.2731 31 1 2.0524 -4.8604 -3.2767 32 1 0.4283 -7.0781 -5.7278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574098799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:38 Heat of formation + Delta-G solvation = -133.023307 kcal Electronic energy + Delta-G solvation = -21146.900303 eV Core-core repulsion = 17114.971982 eV Total energy + Delta-G solvation = -4031.928322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.40987 -48.94716 -48.89428 -43.68168 -38.94800 -36.10828 -34.88575 -34.04225 -31.33210 -29.70380 -29.28886 -27.55519 -24.72388 -24.24522 -22.86275 -21.96027 -19.84337 -19.62738 -19.36660 -18.72193 -18.11867 -17.25531 -17.02029 -16.86151 -16.23584 -15.77249 -15.75822 -15.31970 -15.28483 -15.22785 -15.03918 -15.02657 -14.87928 -14.11892 -13.95097 -13.85692 -13.73054 -13.15511 -12.94019 -12.86205 -12.83532 -12.47371 -12.13151 -11.62403 -11.34308 -11.23381 -11.00432 -10.96677 -10.39237 -8.35171 -6.48125 -0.03243 0.52420 1.13290 1.25438 1.42060 1.42599 1.57338 2.15254 2.32912 2.53135 2.97561 2.99968 3.06277 3.25795 3.40352 3.78702 3.87659 4.13495 4.24518 4.48707 4.51627 4.62684 4.63210 4.76521 4.85214 4.97806 5.09312 5.45720 5.51983 5.88625 6.37023 6.45073 6.72198 7.23842 8.77167 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.033169 B = 0.003075 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.962874 B = 9104.343714 C = 9446.179391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.301 3.699 3 N -0.530 5.530 4 C 0.126 3.874 5 C 0.583 3.417 6 F -0.150 7.150 7 F -0.160 7.160 8 F -0.164 7.164 9 N -0.285 5.285 10 N -0.358 5.358 11 C 0.136 3.864 12 C 0.048 3.952 13 O -0.395 6.395 14 C 0.210 3.790 15 C -0.548 4.548 16 H 0.069 0.931 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.984 3.016 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.276 1.276 23 H 0.126 0.874 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.152 0.848 28 H 0.058 0.942 29 H 0.031 0.969 30 H -0.005 1.005 31 H -0.016 1.016 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 15.344 11.660 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.027 3.973 3 N -0.259 5.259 4 C -0.159 4.159 5 C 0.525 3.475 6 F -0.132 7.132 7 F -0.141 7.141 8 F -0.145 7.145 9 N -0.116 5.116 10 N -0.150 5.150 11 C 0.015 3.985 12 C -0.031 4.031 13 O -0.314 6.314 14 C 0.135 3.865 15 C -0.586 4.586 16 H 0.087 0.913 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.201 1.201 23 H 0.144 0.856 24 H 0.133 0.867 25 H 0.121 0.879 26 H 0.132 0.868 27 H 0.170 0.830 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.013 0.987 31 H 0.001 0.999 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.575 15.050 11.642 19.092 hybrid contribution 0.265 -0.577 -0.769 0.997 sum 1.841 14.473 10.873 18.196 Atomic orbital electron populations 1.20859 0.79049 1.06964 1.07219 1.25471 0.98689 0.80433 0.92725 1.70311 0.99245 1.30449 1.25871 1.23870 0.94277 0.91150 1.06614 1.16144 0.79130 0.77792 0.74397 1.93263 1.89788 1.38152 1.91956 1.93262 1.65915 1.89333 1.65588 1.93267 1.85219 1.96367 1.39651 1.78023 1.00241 1.10332 1.22984 1.50488 1.02389 1.09011 1.53099 1.21836 1.04781 0.74778 0.97091 1.22604 0.98808 0.85153 0.96499 1.87742 1.88356 1.24048 1.31281 1.19913 0.93743 0.93516 0.79324 1.21409 1.46924 0.96303 0.93955 0.91303 1.25961 0.94864 1.04175 0.94200 1.70071 1.49286 1.39174 0.98479 0.85117 0.78066 0.77201 0.78925 1.18421 1.19689 1.20107 0.85551 0.86663 0.87861 0.86792 0.83038 0.92394 0.95063 0.98679 0.99861 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.00 71.24 0.71 -0.24 16 2 C 0.30 6.65 7.98 138.23 1.10 7.75 16 3 N -0.53 -14.13 11.00 -179.73 -1.98 -16.11 16 4 C 0.13 3.57 7.40 138.63 1.03 4.59 16 5 C 0.58 14.69 3.57 71.23 0.25 14.95 16 6 F -0.15 -3.58 17.16 44.97 0.77 -2.81 16 7 F -0.16 -3.92 17.30 44.97 0.78 -3.14 16 8 F -0.16 -4.21 17.30 44.97 0.78 -3.43 16 9 N -0.29 -8.60 12.70 -51.33 -0.65 -9.25 16 10 N -0.36 -9.09 3.64 -338.48 -1.23 -10.32 16 11 C 0.14 3.18 6.50 86.38 0.56 3.74 16 12 C 0.05 1.55 6.26 71.98 0.45 2.00 16 13 O -0.40 -17.04 10.33 -148.98 -1.54 -18.58 16 14 C 0.21 11.04 5.69 71.23 0.41 11.45 16 15 C -0.55 -30.80 9.43 25.60 0.24 -30.55 16 16 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 17 C 0.01 0.37 5.46 84.65 0.46 0.83 16 18 N -0.93 -54.14 13.29 21.44 0.28 -53.85 16 19 Si 0.98 42.35 29.54 68.60 2.03 44.38 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 23 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 1.06 7.77 -2.39 -0.02 1.04 16 26 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.15 2.46 7.73 -2.39 -0.02 2.44 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 31 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -68.28 304.48 5.61 -62.66 By element: Atomic # 1 Polarization: -5.24 SS G_CDS: 1.15 Total: -4.08 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.22 Total: 14.53 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -3.57 Total: -89.53 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.54 Total: -18.58 kcal Atomic # 9 Polarization: -11.71 SS G_CDS: 2.33 Total: -9.38 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -68.28 5.61 -62.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574098799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.360 kcal (2) G-P(sol) polarization free energy of solvation -68.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds