Wall clock time and date at job start Tue Mar 31 2020 01:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34716 * 116.99778 * 2 1 4 4 O 1.21456 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.47815 * 119.99854 * 179.97438 * 3 2 1 6 6 C 1.40041 * 120.10593 * 179.97438 * 5 3 2 7 7 C 1.38380 * 117.97962 * 179.97438 * 6 5 3 8 8 C 1.39483 * 118.03038 * 0.02562 * 7 6 5 9 9 N 1.38984 * 120.02916 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99717 * 174.91280 * 9 8 7 11 11 O 1.21268 * 120.00081 * 5.08852 * 10 9 8 12 12 C 1.50704 * 120.00227 * 185.08325 * 10 9 8 13 13 C 1.52997 * 109.47562 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.47553 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99680 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99916 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47294 * 60.00379 * 18 16 14 20 20 H 1.48499 * 109.47390 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47367 * 300.00018 * 18 16 14 22 22 N 1.32789 * 119.93464 * 359.97438 * 8 7 6 23 23 N 1.28363 * 122.17917 * 0.02562 * 22 8 7 24 24 H 1.08996 * 109.47798 * 300.00310 * 1 2 3 25 25 H 1.08999 * 109.47008 * 60.00781 * 1 2 3 26 26 H 1.09007 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.07999 * 121.01219 * 359.97438 * 6 5 3 28 28 H 1.07995 * 120.98323 * 179.72369 * 7 6 5 29 29 H 0.96996 * 120.00538 * 354.91272 * 9 8 7 30 30 H 1.09002 * 109.46909 * 300.00456 * 12 10 9 31 31 H 1.09002 * 109.46890 * 60.00014 * 12 10 9 32 32 H 1.09006 * 109.46887 * 300.00458 * 13 12 10 33 33 H 1.09002 * 109.47232 * 59.99947 * 13 12 10 34 34 H 0.97000 * 120.00600 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2189 -0.0005 5 6 3.5396 1.2777 0.0006 6 6 4.1777 2.5243 0.0000 7 6 5.5613 2.5455 0.0011 8 6 6.2355 1.3244 0.0022 9 7 7.6251 1.2971 0.0028 10 6 8.2759 0.1216 0.1073 11 8 7.6526 -0.9187 0.1078 12 6 9.7783 0.0997 0.2234 13 6 10.2609 -1.3484 0.3270 14 6 11.7632 -1.3703 0.4437 15 1 12.3182 -0.4438 0.4443 16 6 12.4290 -2.5728 0.5507 17 7 11.7531 -3.7009 0.5505 18 14 14.2911 -2.5997 0.6961 19 1 14.7037 -1.8520 1.9110 20 1 14.7596 -4.0053 0.7966 21 1 14.8907 -1.9634 -0.5043 22 7 5.5484 0.1881 0.0026 23 7 4.2650 0.1653 0.0016 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.6073 3.4414 -0.0012 28 1 6.1031 3.4797 -0.0037 29 1 8.1265 2.1240 -0.0720 30 1 10.2177 0.5665 -0.6582 31 1 10.0819 0.6489 1.1146 32 1 9.8215 -1.8156 1.2084 33 1 9.9574 -1.8973 -0.5645 34 1 12.2214 -4.5470 0.6261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589797059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:33 Heat of formation + Delta-G solvation = -51.434504 kcal Electronic energy + Delta-G solvation = -20281.716157 eV Core-core repulsion = 16795.182531 eV Total energy + Delta-G solvation = -3486.533626 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59652 -40.43925 -39.26481 -36.79749 -35.45353 -33.59783 -33.38014 -31.87070 -30.81844 -28.15909 -26.27241 -25.46258 -24.61354 -22.12002 -21.76828 -20.18909 -18.64685 -18.19743 -17.71213 -17.14371 -16.75543 -16.55702 -15.76019 -15.58081 -14.82606 -14.66632 -14.54797 -14.29670 -13.68578 -13.55600 -13.47863 -12.67652 -12.48198 -12.25061 -12.02433 -11.35797 -11.28279 -11.08249 -10.96575 -10.95068 -10.67658 -10.61449 -10.06595 -10.01836 -9.72040 -9.27240 -9.14617 -8.92673 -8.37237 -6.00666 -4.06286 0.13605 0.53185 2.02877 2.22833 2.67798 2.92506 3.31490 3.36822 3.37986 3.48623 3.75176 4.12527 4.31415 4.36473 4.43514 4.59724 4.82581 4.91121 4.99774 5.21128 5.31896 5.34283 5.48185 5.52255 5.95489 6.02393 6.02623 6.25324 6.68433 7.21627 7.34057 7.66900 7.75714 7.99399 8.22939 8.36691 8.55217 9.01196 9.57757 11.10087 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.043890 B = 0.002823 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.799315 B = 9916.180000 C =10521.500206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.332 6.332 3 C 0.539 3.461 4 O -0.504 6.504 5 C -0.020 4.020 6 C -0.032 4.032 7 C -0.167 4.167 8 C 0.334 3.666 9 N -0.656 5.656 10 C 0.493 3.507 11 O -0.450 6.450 12 C -0.125 4.125 13 C 0.035 3.965 14 C -0.531 4.531 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.887 5.887 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 N -0.228 5.228 23 N -0.142 5.142 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.165 0.835 28 H 0.162 0.838 29 H 0.420 0.580 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 15.849 -1.418 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C 0.381 3.619 4 O -0.391 6.391 5 C -0.167 4.167 6 C -0.060 4.060 7 C -0.199 4.199 8 C 0.097 3.903 9 N -0.303 5.303 10 C 0.280 3.720 11 O -0.315 6.315 12 C -0.165 4.165 13 C -0.002 4.002 14 C -0.569 4.569 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 N -0.082 5.082 23 N 0.008 4.992 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.183 0.817 28 H 0.180 0.820 29 H 0.258 0.742 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.708 13.455 -1.385 22.283 hybrid contribution 1.054 2.064 0.046 2.318 sum -16.655 15.519 -1.338 22.804 Atomic orbital electron populations 1.23379 0.75721 1.04238 1.02594 1.86708 1.23476 1.31342 1.83138 1.20310 0.87242 0.81917 0.72475 1.90848 1.65851 1.36106 1.46245 1.21530 0.92777 0.92726 1.09654 1.22089 0.94011 0.98537 0.91335 1.21872 0.94494 0.98444 1.05096 1.20718 0.87573 0.91953 0.90009 1.44254 1.01961 1.12855 1.71277 1.22237 0.92195 0.82112 0.75407 1.90847 1.68387 1.30858 1.41443 1.21958 0.86116 1.05429 1.02992 1.18950 0.95371 0.87012 0.98909 1.21118 0.91673 0.92532 1.51625 0.92557 1.25021 0.98403 0.95679 0.95200 1.69977 1.35628 0.97504 1.49430 0.86634 0.85556 0.77047 0.78574 1.20231 1.21248 1.20231 1.74111 0.99008 1.21246 1.13792 1.73596 0.99681 1.24509 1.01431 0.91670 0.91671 0.87571 0.81745 0.82006 0.74202 0.89562 0.89525 0.95548 0.95525 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.33 -4.01 10.39 -40.54 -0.42 -4.43 16 3 C 0.54 6.75 7.95 34.65 0.28 7.02 16 4 O -0.50 -6.48 16.17 -19.23 -0.31 -6.79 16 5 C -0.02 -0.27 6.83 -82.85 -0.57 -0.83 16 6 C -0.03 -0.30 9.71 -38.85 -0.38 -0.68 16 7 C -0.17 -1.48 10.04 -39.07 -0.39 -1.87 16 8 C 0.33 4.50 7.50 -154.57 -1.16 3.34 16 9 N -0.66 -8.23 5.38 -11.33 -0.06 -8.29 16 10 C 0.49 8.80 7.79 -10.98 -0.09 8.72 16 11 O -0.45 -10.35 14.26 5.57 0.08 -10.27 16 12 C -0.12 -2.29 5.64 -27.88 -0.16 -2.44 16 13 C 0.04 0.90 4.26 -27.89 -0.12 0.78 16 14 C -0.53 -14.52 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 N -0.23 -4.03 9.07 31.27 0.28 -3.75 16 23 N -0.14 -2.33 11.30 33.31 0.38 -1.95 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.11 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.17 1.10 7.71 -52.49 -0.40 0.70 16 28 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 29 H 0.42 3.17 8.71 -40.82 -0.36 2.81 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 33 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -37.04 312.99 -5.22 -42.26 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -3.68 Total: -3.60 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.92 Total: 2.12 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 1.34 Total: -40.18 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.65 Total: -21.49 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -37.04 -5.22 -42.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589797059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.174 kcal (2) G-P(sol) polarization free energy of solvation -37.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds