Wall clock time and date at job start Tue Mar 31 2020 01:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34716 * 116.99778 * 2 1 4 4 O 1.21456 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.47815 * 119.99854 * 179.97438 * 3 2 1 6 6 C 1.40041 * 120.10593 * 179.97438 * 5 3 2 7 7 C 1.38380 * 117.97962 * 179.97438 * 6 5 3 8 8 C 1.39483 * 118.03038 * 0.02562 * 7 6 5 9 9 N 1.38984 * 120.02916 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99717 * 174.91280 * 9 8 7 11 11 O 1.21268 * 120.00081 * 5.08852 * 10 9 8 12 12 C 1.50704 * 120.00227 * 185.08325 * 10 9 8 13 13 C 1.52997 * 109.47562 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.47553 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99680 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99916 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47294 * 60.00379 * 18 16 14 20 20 H 1.48499 * 109.47390 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47367 * 300.00018 * 18 16 14 22 22 N 1.32789 * 119.93464 * 359.97438 * 8 7 6 23 23 N 1.28363 * 122.17917 * 0.02562 * 22 8 7 24 24 H 1.08996 * 109.47798 * 300.00310 * 1 2 3 25 25 H 1.08999 * 109.47008 * 60.00781 * 1 2 3 26 26 H 1.09007 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.07999 * 121.01219 * 359.97438 * 6 5 3 28 28 H 1.07995 * 120.98323 * 179.72369 * 7 6 5 29 29 H 0.96996 * 120.00538 * 354.91272 * 9 8 7 30 30 H 1.09002 * 109.46909 * 300.00456 * 12 10 9 31 31 H 1.09002 * 109.46890 * 60.00014 * 12 10 9 32 32 H 1.09006 * 109.46887 * 300.00458 * 13 12 10 33 33 H 1.09002 * 109.47232 * 59.99947 * 13 12 10 34 34 H 0.97000 * 120.00600 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2189 -0.0005 5 6 3.5396 1.2777 0.0006 6 6 4.1777 2.5243 0.0000 7 6 5.5613 2.5455 0.0011 8 6 6.2355 1.3244 0.0022 9 7 7.6251 1.2971 0.0028 10 6 8.2759 0.1216 0.1073 11 8 7.6526 -0.9187 0.1078 12 6 9.7783 0.0997 0.2234 13 6 10.2609 -1.3484 0.3270 14 6 11.7632 -1.3703 0.4437 15 1 12.3182 -0.4438 0.4443 16 6 12.4290 -2.5728 0.5507 17 7 11.7531 -3.7009 0.5505 18 14 14.2911 -2.5997 0.6961 19 1 14.7037 -1.8520 1.9110 20 1 14.7596 -4.0053 0.7966 21 1 14.8907 -1.9634 -0.5043 22 7 5.5484 0.1881 0.0026 23 7 4.2650 0.1653 0.0016 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.6073 3.4414 -0.0012 28 1 6.1031 3.4797 -0.0037 29 1 8.1265 2.1240 -0.0720 30 1 10.2177 0.5665 -0.6582 31 1 10.0819 0.6489 1.1146 32 1 9.8215 -1.8156 1.2084 33 1 9.9574 -1.8973 -0.5645 34 1 12.2214 -4.5470 0.6261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589797059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:32 Heat of formation + Delta-G solvation = -79.223433 kcal Electronic energy + Delta-G solvation = -20282.921175 eV Core-core repulsion = 16795.182531 eV Total energy + Delta-G solvation = -3487.738644 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.60014 -41.43386 -40.53251 -37.71123 -36.67606 -35.56475 -34.31025 -33.32672 -32.32603 -28.96672 -27.93623 -26.43356 -25.87163 -23.65841 -22.82955 -21.56817 -19.65290 -19.25557 -18.88601 -18.48016 -17.89994 -17.65825 -17.10518 -16.91598 -16.46521 -15.90931 -15.59595 -15.33530 -14.90183 -14.49943 -14.42515 -14.18524 -14.15749 -13.34243 -13.20252 -12.91972 -12.79630 -12.56561 -12.51176 -11.93408 -11.89598 -11.87786 -11.64063 -11.46914 -11.31916 -11.10261 -10.54316 -10.51750 -10.01609 -8.16105 -6.30356 -0.82113 -0.30278 1.02602 1.37513 1.44302 1.48458 1.56007 1.63662 1.67980 2.44355 2.48323 2.79739 3.17466 3.20317 3.51521 3.66036 3.77465 3.92289 4.22740 4.31053 4.32730 4.50633 4.56056 4.65425 4.70833 4.77152 5.06997 5.09651 5.23354 5.52357 5.63629 5.86939 6.17464 6.19238 6.42170 6.88134 7.06082 7.40303 7.53831 8.96370 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.043890 B = 0.002823 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.799315 B = 9916.180000 C =10521.500206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.539 3.461 4 O -0.508 6.508 5 C -0.023 4.023 6 C -0.027 4.027 7 C -0.126 4.126 8 C 0.312 3.688 9 N -0.632 5.632 10 C 0.499 3.501 11 O -0.516 6.516 12 C -0.111 4.111 13 C 0.038 3.962 14 C -0.541 4.541 15 H 0.082 0.918 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.973 3.027 19 H -0.261 1.261 20 H -0.292 1.292 21 H -0.261 1.261 22 N -0.289 5.289 23 N -0.189 5.189 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.128 0.872 27 H 0.202 0.798 28 H 0.223 0.777 29 H 0.447 0.553 30 H 0.119 0.881 31 H 0.118 0.882 32 H -0.018 1.018 33 H -0.017 1.017 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.483 19.964 -1.456 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.381 3.619 4 O -0.395 6.395 5 C -0.171 4.171 6 C -0.054 4.054 7 C -0.157 4.157 8 C 0.074 3.926 9 N -0.282 5.282 10 C 0.288 3.712 11 O -0.386 6.386 12 C -0.151 4.151 13 C 0.000 4.000 14 C -0.579 4.579 15 H 0.100 0.900 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.797 3.203 19 H -0.186 1.186 20 H -0.218 1.218 21 H -0.186 1.186 22 N -0.141 5.141 23 N -0.037 5.037 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.146 0.854 27 H 0.219 0.781 28 H 0.239 0.761 29 H 0.290 0.710 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.000 1.000 33 H 0.001 0.999 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.987 17.640 -1.428 24.531 hybrid contribution 0.640 0.858 0.051 1.072 sum -16.346 18.498 -1.377 24.724 Atomic orbital electron populations 1.23707 0.73519 1.06069 1.03338 1.86698 1.25814 1.31408 1.82821 1.20308 0.87215 0.82015 0.72332 1.90832 1.65912 1.36111 1.46688 1.21956 0.93047 0.93705 1.08408 1.22550 0.94507 0.98279 0.90072 1.22424 0.94066 0.98531 1.00693 1.20950 0.87498 0.92907 0.91217 1.43626 1.01985 1.12218 1.70392 1.22023 0.92045 0.82706 0.74426 1.90842 1.69455 1.33587 1.44748 1.21696 0.86798 1.00653 1.05953 1.18735 0.95118 0.91313 0.94839 1.21685 0.92547 0.93456 1.50218 0.90032 1.26151 1.04346 0.95290 0.94834 1.70177 1.38093 0.98356 1.51292 0.85378 0.78443 0.76927 0.79515 1.18588 1.21780 1.18566 1.73897 0.99891 1.24494 1.15794 1.73495 0.99634 1.26542 1.03979 0.90926 0.90878 0.85367 0.78071 0.76069 0.70971 0.86327 0.86416 0.99981 0.99892 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.35 -8.56 10.39 -56.26 -0.58 -9.15 16 3 C 0.54 13.16 7.95 70.36 0.56 13.72 16 4 O -0.51 -12.22 16.17 19.98 0.32 -11.90 16 5 C -0.02 -0.58 6.83 41.97 0.29 -0.29 16 6 C -0.03 -0.41 9.71 22.74 0.22 -0.19 16 7 C -0.13 -1.69 10.04 22.60 0.23 -1.46 16 8 C 0.31 7.91 7.50 133.04 1.00 8.90 16 9 N -0.63 -14.52 5.38 -308.14 -1.66 -16.18 16 10 C 0.50 17.93 7.79 87.66 0.68 18.62 16 11 O -0.52 -25.27 14.26 -2.99 -0.04 -25.31 16 12 C -0.11 -3.96 5.64 29.85 0.17 -3.79 16 13 C 0.04 2.01 4.26 29.85 0.13 2.14 16 14 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 15 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 16 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 17 N -0.94 -59.39 13.29 21.45 0.28 -59.10 16 18 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 22 N -0.29 -10.57 9.07 -54.98 -0.50 -11.06 16 23 N -0.19 -6.41 11.30 -48.53 -0.55 -6.96 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.20 1.67 7.71 -2.91 -0.02 1.65 16 28 H 0.22 0.24 8.06 -2.91 -0.02 0.22 16 29 H 0.45 4.82 8.71 -92.71 -0.81 4.01 16 30 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 32 H -0.02 -1.12 8.10 -2.38 -0.02 -1.14 16 33 H -0.02 -1.07 8.10 -2.39 -0.02 -1.08 16 34 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -89.70 312.99 4.80 -84.89 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: 0.34 Total: -0.46 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.16 Total: 9.79 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -2.42 Total: -93.31 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.30 Total: -46.35 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -89.70 4.80 -84.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589797059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.668 kcal (2) G-P(sol) polarization free energy of solvation -89.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds