Wall clock time and date at job start Tue Mar 31 2020 00:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47592 * 2 1 4 4 C 1.50708 * 109.47195 * 240.00022 * 2 1 3 5 5 H 1.07993 * 119.99645 * 330.91520 * 4 2 1 6 6 C 1.37871 * 120.00322 * 150.91857 * 4 2 1 7 7 N 1.31519 * 119.99637 * 356.70030 * 6 4 2 8 8 Si 1.86801 * 120.00459 * 176.42301 * 6 4 2 9 9 H 1.48495 * 109.46829 * 89.99406 * 8 6 4 10 10 H 1.48494 * 109.47222 * 210.00072 * 8 6 4 11 11 H 1.48506 * 109.46494 * 329.99842 * 8 6 4 12 12 N 1.46504 * 109.47165 * 120.00120 * 2 1 3 13 13 C 1.39711 * 119.99769 * 274.99917 * 12 2 1 14 14 C 1.39025 * 120.00395 * 359.72205 * 13 12 2 15 15 C 1.38202 * 120.21894 * 179.77056 * 14 13 12 16 16 C 1.38024 * 120.22772 * 0.50504 * 15 14 13 17 17 N 1.48019 * 120.00129 * 179.72770 * 16 15 14 18 18 O 1.21803 * 119.99528 * 353.50079 * 17 16 15 19 19 O 1.21797 * 120.00252 * 173.50275 * 17 16 15 20 20 C 1.39582 * 120.00235 * 359.74987 * 16 15 14 21 21 C 1.47865 * 120.10459 * 179.97438 * 20 16 15 22 22 N 1.34773 * 119.99739 * 119.59165 * 21 20 16 23 23 O 1.21552 * 120.00363 * 299.58521 * 21 20 16 24 24 C 1.38632 * 120.00481 * 180.02562 * 13 12 2 25 25 H 1.09000 * 109.47173 * 295.21750 * 1 2 3 26 26 H 1.09011 * 109.47121 * 55.21434 * 1 2 3 27 27 H 1.08997 * 109.47709 * 175.21019 * 1 2 3 28 28 H 0.96999 * 120.00322 * 5.44736 * 7 6 4 29 29 H 0.96996 * 120.00027 * 94.99929 * 12 2 1 30 30 H 1.07999 * 119.88752 * 359.97438 * 14 13 12 31 31 H 1.07998 * 119.88579 * 180.23834 * 15 14 13 32 32 H 0.97004 * 120.00534 * 359.97438 * 22 21 20 33 33 H 0.97006 * 120.00086 * 179.97438 * 22 21 20 34 34 H 1.08004 * 120.11222 * 359.95126 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4416 -1.4949 -1.6800 6 6 3.2458 -0.3589 -1.7824 7 7 3.9348 0.6394 -1.2741 8 14 3.9152 -1.3055 -3.2471 9 1 3.4413 -0.6724 -4.5040 10 1 5.3996 -1.2866 -3.2122 11 1 3.4365 -2.7101 -3.1892 12 7 2.0182 -0.6907 1.1962 13 6 2.1517 0.0063 2.3996 14 6 1.8265 1.3567 2.4607 15 6 1.9524 2.0493 3.6500 16 6 2.4115 1.4078 4.7826 17 7 2.5500 2.1559 6.0522 18 8 2.3732 3.3609 6.0713 19 8 2.8408 1.5667 7.0777 20 6 2.7456 0.0535 4.7306 21 6 3.2383 -0.6359 5.9424 22 7 2.5577 -1.6854 6.4442 23 8 4.2570 -0.2562 6.4859 24 6 2.6143 -0.6469 3.5315 25 1 -0.3633 0.4378 0.9297 26 1 -0.3634 0.5863 -0.8441 27 1 -0.3634 -1.0240 -0.0858 28 1 3.6289 1.0772 -0.4644 29 1 2.2489 -1.6318 1.1526 30 1 1.4714 1.8652 1.5766 31 1 1.6946 3.0972 3.6923 32 1 1.7445 -1.9883 6.0106 33 1 2.8810 -2.1379 7.2390 34 1 2.8713 -1.6949 3.4853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596106247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:18 Heat of formation + Delta-G solvation = -27.433105 kcal Electronic energy + Delta-G solvation = -21525.112717 eV Core-core repulsion = 18039.619870 eV Total energy + Delta-G solvation = -3485.492847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.76177 -39.91261 -38.69195 -36.18891 -36.01314 -33.71748 -33.19186 -31.33499 -30.81238 -28.82052 -25.63459 -24.96439 -24.12630 -22.16164 -21.69509 -20.29145 -18.89371 -18.35357 -17.67043 -17.61544 -17.14333 -16.78815 -16.09687 -15.56715 -14.72551 -14.35774 -14.07574 -13.94687 -13.71190 -13.50064 -13.31153 -13.10546 -12.34372 -11.69935 -11.52115 -11.38245 -11.09121 -11.07785 -10.84334 -10.71301 -10.69359 -10.41342 -10.06658 -9.87041 -9.69453 -9.24204 -9.20345 -8.84080 -7.30857 -6.88043 -4.73523 0.30034 1.04956 1.83453 1.94317 2.66922 3.14988 3.19814 3.33237 3.35964 3.58033 3.84556 4.14240 4.57686 4.69327 4.97578 5.07219 5.13961 5.29897 5.65586 5.71775 5.88002 6.00651 6.09116 6.13698 6.18228 6.37372 6.54719 6.71592 6.75508 6.86844 7.19505 7.35285 7.74527 7.88611 8.12782 8.17013 8.21138 8.32855 9.06530 10.47958 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.004504 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.840295 B = 6215.716091 C = 6540.894425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.223 3.777 3 H 0.056 0.944 4 C -0.608 4.608 5 H 0.061 0.939 6 C 0.034 3.966 7 N -0.880 5.880 8 Si 1.073 2.927 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.285 1.285 12 N -0.683 5.683 13 C 0.275 3.725 14 C -0.193 4.193 15 C -0.001 4.001 16 C -0.107 4.107 17 N 0.047 4.953 18 O -0.196 6.196 19 O -0.168 6.168 20 C -0.015 4.015 21 C 0.569 3.431 22 N -0.845 5.845 23 O -0.509 6.509 24 C -0.187 4.187 25 H 0.033 0.967 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.402 0.598 33 H 0.406 0.594 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.514 -4.678 6.807 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.124 3.876 3 H 0.074 0.926 4 C -0.647 4.647 5 H 0.079 0.921 6 C -0.176 4.176 7 N -0.513 5.513 8 Si 0.899 3.101 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.211 1.211 12 N -0.301 5.301 13 C 0.156 3.844 14 C -0.217 4.217 15 C -0.021 4.021 16 C -0.195 4.195 17 N 0.559 4.441 18 O -0.403 6.403 19 O -0.382 6.382 20 C -0.021 4.021 21 C 0.352 3.648 22 N -0.410 5.410 23 O -0.382 6.382 24 C -0.212 4.212 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.230 0.770 33 H 0.237 0.763 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.742 -4.551 5.076 8.304 hybrid contribution -1.373 -0.470 1.465 2.063 sum -6.115 -5.021 6.541 10.266 Atomic orbital electron populations 1.22103 0.97744 1.00948 0.99677 1.19235 0.90447 0.95044 0.82889 0.92626 1.22087 1.07393 1.24249 1.10929 0.92093 1.26129 0.93654 0.95410 1.02418 1.70813 1.41020 1.18474 1.20958 0.83477 0.76633 0.75273 0.74709 1.20859 1.20661 1.21053 1.47777 1.63018 1.12806 1.06491 1.18493 0.86852 0.91809 0.87209 1.20801 1.09564 0.93192 0.98158 1.20601 0.91712 1.00486 0.89342 1.20413 1.21534 0.91895 0.85680 1.43408 0.97123 1.00924 1.02644 1.94466 1.55716 0.97224 1.92906 1.94545 1.50523 1.70471 1.22635 1.19286 0.96345 0.91408 0.95012 1.17958 0.83933 0.79780 0.83118 1.43642 1.29942 1.34212 1.33191 1.90874 1.24248 1.63988 1.59133 1.20604 1.09459 1.00602 0.90515 0.94831 0.92381 0.93511 0.91323 0.76922 0.83609 0.83339 0.77002 0.76255 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.42 37.15 0.35 -2.12 16 2 C 0.22 4.37 2.07 -69.08 -0.14 4.23 16 3 H 0.06 1.19 4.84 -51.93 -0.25 0.94 16 4 C -0.61 -13.84 8.50 -34.44 -0.29 -14.13 16 5 H 0.06 1.39 7.82 -52.49 -0.41 0.98 16 6 C 0.03 0.82 5.46 -17.82 -0.10 0.72 16 7 N -0.88 -23.03 13.62 55.43 0.75 -22.27 16 8 Si 1.07 21.65 29.91 -169.99 -5.08 16.57 16 9 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 12 N -0.68 -11.74 5.24 -53.32 -0.28 -12.02 16 13 C 0.28 4.39 6.63 -83.83 -0.56 3.84 16 14 C -0.19 -3.03 8.86 -39.30 -0.35 -3.38 16 15 C 0.00 -0.01 9.54 -39.67 -0.38 -0.39 16 16 C -0.11 -1.83 6.87 -79.52 -0.55 -2.38 16 17 N 0.05 0.90 4.45 34.17 0.15 1.05 16 18 O -0.20 -3.74 18.46 -29.46 -0.54 -4.28 16 19 O -0.17 -3.37 15.23 -36.86 -0.56 -3.93 16 20 C -0.01 -0.23 5.63 -104.99 -0.59 -0.82 16 21 C 0.57 8.91 5.87 -12.32 -0.07 8.84 16 22 N -0.85 -8.73 8.87 30.53 0.27 -8.46 16 23 O -0.51 -10.06 16.04 -18.04 -0.29 -10.35 16 24 C -0.19 -2.71 9.63 -38.97 -0.38 -3.08 16 25 H 0.03 0.51 7.82 -51.93 -0.41 0.10 16 26 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.27 7.12 6.60 -40.82 -0.27 6.85 16 29 H 0.39 6.46 8.60 -40.82 -0.35 6.11 16 30 H 0.15 2.25 6.19 -52.49 -0.32 1.92 16 31 H 0.15 2.03 7.61 -52.49 -0.40 1.63 16 32 H 0.40 3.02 8.82 -40.82 -0.36 2.66 16 33 H 0.41 3.47 8.93 -40.82 -0.36 3.11 16 34 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 303.17 15.07 4.57 4.57 Total: -1.00 -29.72 303.17 -7.26 -36.98 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -3.20 Total: 10.82 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.05 Total: -8.67 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.90 Total: -41.70 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.39 Total: -18.57 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.08 Total: 16.57 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.72 -7.26 -36.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596106247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.548 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds