Wall clock time and date at job start Tue Mar 31 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47592 * 2 1 4 4 C 1.50708 * 109.47195 * 240.00022 * 2 1 3 5 5 H 1.07993 * 119.99645 * 330.91520 * 4 2 1 6 6 C 1.37871 * 120.00322 * 150.91857 * 4 2 1 7 7 N 1.31519 * 119.99637 * 356.70030 * 6 4 2 8 8 Si 1.86801 * 120.00459 * 176.42301 * 6 4 2 9 9 H 1.48495 * 109.46829 * 89.99406 * 8 6 4 10 10 H 1.48494 * 109.47222 * 210.00072 * 8 6 4 11 11 H 1.48506 * 109.46494 * 329.99842 * 8 6 4 12 12 N 1.46504 * 109.47165 * 120.00120 * 2 1 3 13 13 C 1.39711 * 119.99769 * 274.99917 * 12 2 1 14 14 C 1.39025 * 120.00395 * 359.72205 * 13 12 2 15 15 C 1.38202 * 120.21894 * 179.77056 * 14 13 12 16 16 C 1.38024 * 120.22772 * 0.50504 * 15 14 13 17 17 N 1.48019 * 120.00129 * 179.72770 * 16 15 14 18 18 O 1.21803 * 119.99528 * 353.50079 * 17 16 15 19 19 O 1.21797 * 120.00252 * 173.50275 * 17 16 15 20 20 C 1.39582 * 120.00235 * 359.74987 * 16 15 14 21 21 C 1.47865 * 120.10459 * 179.97438 * 20 16 15 22 22 N 1.34773 * 119.99739 * 119.59165 * 21 20 16 23 23 O 1.21552 * 120.00363 * 299.58521 * 21 20 16 24 24 C 1.38632 * 120.00481 * 180.02562 * 13 12 2 25 25 H 1.09000 * 109.47173 * 295.21750 * 1 2 3 26 26 H 1.09011 * 109.47121 * 55.21434 * 1 2 3 27 27 H 1.08997 * 109.47709 * 175.21019 * 1 2 3 28 28 H 0.96999 * 120.00322 * 5.44736 * 7 6 4 29 29 H 0.96996 * 120.00027 * 94.99929 * 12 2 1 30 30 H 1.07999 * 119.88752 * 359.97438 * 14 13 12 31 31 H 1.07998 * 119.88579 * 180.23834 * 15 14 13 32 32 H 0.97004 * 120.00534 * 359.97438 * 22 21 20 33 33 H 0.97006 * 120.00086 * 179.97438 * 22 21 20 34 34 H 1.08004 * 120.11222 * 359.95126 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 1.4416 -1.4949 -1.6800 6 6 3.2458 -0.3589 -1.7824 7 7 3.9348 0.6394 -1.2741 8 14 3.9152 -1.3055 -3.2471 9 1 3.4413 -0.6724 -4.5040 10 1 5.3996 -1.2866 -3.2122 11 1 3.4365 -2.7101 -3.1892 12 7 2.0182 -0.6907 1.1962 13 6 2.1517 0.0063 2.3996 14 6 1.8265 1.3567 2.4607 15 6 1.9524 2.0493 3.6500 16 6 2.4115 1.4078 4.7826 17 7 2.5500 2.1559 6.0522 18 8 2.3732 3.3609 6.0713 19 8 2.8408 1.5667 7.0777 20 6 2.7456 0.0535 4.7306 21 6 3.2383 -0.6359 5.9424 22 7 2.5577 -1.6854 6.4442 23 8 4.2570 -0.2562 6.4859 24 6 2.6143 -0.6469 3.5315 25 1 -0.3633 0.4378 0.9297 26 1 -0.3634 0.5863 -0.8441 27 1 -0.3634 -1.0240 -0.0858 28 1 3.6289 1.0772 -0.4644 29 1 2.2489 -1.6318 1.1526 30 1 1.4714 1.8652 1.5766 31 1 1.6946 3.0972 3.6923 32 1 1.7445 -1.9883 6.0106 33 1 2.8810 -2.1379 7.2390 34 1 2.8713 -1.6949 3.4853 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596106247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:17 Heat of formation + Delta-G solvation = -47.204067 kcal Electronic energy + Delta-G solvation = -21525.970050 eV Core-core repulsion = 18039.619870 eV Total energy + Delta-G solvation = -3486.350180 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.18010 -41.20355 -39.98019 -37.65469 -37.47651 -34.87358 -34.77857 -32.67418 -32.19373 -30.21319 -27.08347 -26.60637 -25.40960 -23.50241 -23.12746 -21.62243 -20.19570 -19.80854 -19.21052 -18.91036 -18.53139 -17.96299 -17.46247 -16.91512 -16.01717 -15.75672 -15.60222 -15.41988 -14.98190 -14.80718 -14.67565 -14.40346 -13.82017 -13.10200 -12.92547 -12.79387 -12.67593 -12.57553 -12.28868 -12.19558 -12.15186 -11.96893 -11.37528 -11.31023 -10.92760 -10.75873 -10.59929 -10.46549 -8.74150 -8.66139 -6.57673 -1.10508 -0.18842 0.44505 0.57012 1.45440 1.55983 1.59279 1.78081 2.17573 2.27831 2.47986 2.54084 3.23949 3.38345 3.62239 3.83038 3.88121 4.04702 4.36203 4.44226 4.53325 4.67871 4.73632 4.77562 4.91803 5.03479 5.17186 5.35638 5.45717 5.73582 5.79542 6.07975 6.23606 6.28045 6.47867 6.64420 6.80084 7.17793 7.28648 8.64075 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.004504 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.840295 B = 6215.716091 C = 6540.894425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.227 3.773 3 H 0.036 0.964 4 C -0.611 4.611 5 H 0.059 0.941 6 C -0.009 4.009 7 N -0.919 5.919 8 Si 1.111 2.889 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.266 1.266 12 N -0.684 5.684 13 C 0.273 3.727 14 C -0.196 4.196 15 C 0.007 3.993 16 C -0.121 4.121 17 N 0.047 4.953 18 O -0.201 6.201 19 O -0.195 6.195 20 C -0.020 4.020 21 C 0.567 3.433 22 N -0.816 5.816 23 O -0.558 6.558 24 C -0.168 4.168 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.402 0.598 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.419 0.581 33 H 0.418 0.582 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 -6.152 6.633 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.126 3.874 3 H 0.053 0.947 4 C -0.649 4.649 5 H 0.078 0.922 6 C -0.212 4.212 7 N -0.555 5.555 8 Si 0.934 3.066 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.190 1.190 12 N -0.302 5.302 13 C 0.155 3.845 14 C -0.220 4.220 15 C -0.014 4.014 16 C -0.210 4.210 17 N 0.555 4.445 18 O -0.408 6.408 19 O -0.403 6.403 20 C -0.026 4.026 21 C 0.349 3.651 22 N -0.382 5.382 23 O -0.435 6.435 24 C -0.192 4.192 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.238 0.762 30 H 0.166 0.834 31 H 0.182 0.818 32 H 0.250 0.750 33 H 0.251 0.749 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.925 -6.091 4.960 9.839 hybrid contribution -1.124 -0.034 1.535 1.902 sum -7.049 -6.124 6.495 11.374 Atomic orbital electron populations 1.21995 0.95583 1.01445 1.00616 1.19051 0.92042 0.93671 0.82647 0.94669 1.22368 1.06826 1.23720 1.11994 0.92229 1.27156 0.94417 0.95442 1.04203 1.70919 1.42316 1.20512 1.21703 0.82981 0.75399 0.75405 0.72855 1.20173 1.21915 1.19032 1.47089 1.63863 1.12985 1.06302 1.18556 0.87002 0.91884 0.87084 1.20869 1.09614 0.93288 0.98218 1.20739 0.90836 1.01222 0.88571 1.20672 1.22602 0.92543 0.85154 1.43661 0.96784 1.00936 1.03143 1.94440 1.55636 0.97659 1.93097 1.94541 1.51765 1.70506 1.23479 1.19436 0.96325 0.91131 0.95751 1.18004 0.83611 0.80487 0.82953 1.43415 1.29621 1.32188 1.32942 1.90856 1.26458 1.65698 1.60533 1.20791 1.07534 1.01736 0.89127 0.93019 0.92554 0.92972 0.92384 0.76163 0.83427 0.81751 0.74981 0.74864 0.81263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.42 71.98 0.68 -3.68 16 2 C 0.23 8.59 2.07 44.24 0.09 8.68 16 3 H 0.04 1.50 4.84 -2.39 -0.01 1.49 16 4 C -0.61 -27.09 8.50 25.60 0.22 -26.88 16 5 H 0.06 2.62 7.82 -2.91 -0.02 2.59 16 6 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 7 N -0.92 -48.41 13.62 21.45 0.29 -48.11 16 8 Si 1.11 42.96 29.91 68.60 2.05 45.01 16 9 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 10 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 12 N -0.68 -22.16 5.24 -322.61 -1.69 -23.85 16 13 C 0.27 8.12 6.63 38.17 0.25 8.37 16 14 C -0.20 -5.84 8.86 22.45 0.20 -5.64 16 15 C 0.01 0.20 9.54 22.21 0.21 0.41 16 16 C -0.12 -4.01 6.87 36.65 0.25 -3.75 16 17 N 0.05 1.78 4.45 -45.81 -0.20 1.58 16 18 O -0.20 -7.57 18.46 18.88 0.35 -7.22 16 19 O -0.19 -7.82 15.23 25.96 0.40 -7.42 16 20 C -0.02 -0.61 5.63 -20.10 -0.11 -0.72 16 21 C 0.57 16.90 5.87 86.79 0.51 17.41 16 22 N -0.82 -14.85 8.87 -175.59 -1.56 -16.40 16 23 O -0.56 -21.87 16.04 18.46 0.30 -21.57 16 24 C -0.17 -4.41 9.63 22.66 0.22 -4.19 16 25 H 0.05 1.43 7.82 -2.39 -0.02 1.41 16 26 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.27 13.92 6.60 -92.71 -0.61 13.31 16 29 H 0.40 12.20 8.60 -92.71 -0.80 11.40 16 30 H 0.15 4.38 6.19 -2.91 -0.02 4.36 16 31 H 0.17 4.25 7.61 -2.91 -0.02 4.23 16 32 H 0.42 4.91 8.82 -92.70 -0.82 4.10 16 33 H 0.42 6.15 8.93 -92.70 -0.83 5.32 16 34 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -64.13 303.17 1.82 -62.31 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -1.09 Total: 25.63 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 2.98 Total: -9.94 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -3.16 Total: -86.79 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: 1.04 Total: -36.22 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.05 Total: 45.01 kcal Total: -64.13 1.82 -62.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596106247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.106 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds