Wall clock time and date at job start Tue Mar 31 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47130 * 2 1 4 4 C 1.50701 * 109.46939 * 120.00057 * 2 1 3 5 5 H 1.08002 * 120.00316 * 120.00127 * 4 2 1 6 6 C 1.37881 * 120.00021 * 299.99973 * 4 2 1 7 7 N 1.31511 * 120.00303 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99779 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.46943 * 89.99964 * 8 6 4 10 10 H 1.48497 * 109.47223 * 209.99590 * 8 6 4 11 11 H 1.48493 * 109.47375 * 329.99941 * 8 6 4 12 12 N 1.46497 * 109.47598 * 239.99894 * 2 1 3 13 13 C 1.39718 * 119.99973 * 84.99880 * 12 2 1 14 14 C 1.39021 * 120.00305 * 0.02562 * 13 12 2 15 15 C 1.38200 * 120.22001 * 179.97438 * 14 13 12 16 16 C 1.38027 * 120.22689 * 359.97438 * 15 14 13 17 17 N 1.48027 * 119.99556 * 179.97438 * 16 15 14 18 18 O 1.21795 * 120.00206 * 353.46314 * 17 16 15 19 19 O 1.21801 * 119.99383 * 173.46046 * 17 16 15 20 20 C 1.39574 * 120.00234 * 0.02562 * 16 15 14 21 21 C 1.47867 * 120.10471 * 179.97438 * 20 16 15 22 22 N 1.34776 * 119.99816 * 124.49322 * 21 20 16 23 23 O 1.21544 * 120.00146 * 304.49319 * 21 20 16 24 24 C 1.38636 * 120.00238 * 179.72927 * 13 12 2 25 25 H 1.09000 * 109.46755 * 60.00074 * 1 2 3 26 26 H 1.08995 * 109.47342 * 300.00275 * 1 2 3 27 27 H 1.08994 * 109.47086 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00425 * 180.02562 * 7 6 4 29 29 H 0.96993 * 120.00289 * 265.00640 * 12 2 1 30 30 H 1.08006 * 119.89083 * 359.97438 * 14 13 12 31 31 H 1.08002 * 119.88415 * 180.02562 * 15 14 13 32 32 H 0.97004 * 120.00204 * 0.02562 * 22 21 20 33 33 H 0.96999 * 120.00274 * 180.02562 * 22 21 20 34 34 H 1.08002 * 120.11566 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9756 1.9951 3.9068 11 1 0.8469 2.1765 1.4921 12 7 2.0185 -0.6906 -1.1961 13 6 2.1519 0.0064 -2.3996 14 6 1.8217 1.3554 -2.4620 15 6 1.9525 2.0493 -3.6500 16 6 2.4123 1.4078 -4.7824 17 7 2.5499 2.1559 -6.0523 18 8 2.1469 3.3026 -6.1304 19 8 3.0662 1.6246 -7.0191 20 6 2.7465 0.0537 -4.7304 21 6 3.2388 -0.6359 -5.9422 22 7 4.4221 -1.2806 -5.9169 23 8 2.5764 -0.6212 -6.9612 24 6 2.6195 -0.6457 -3.5302 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.9033 -0.5278 4.4376 29 1 2.2491 -1.6317 -1.1526 30 1 1.4618 1.8628 -1.5792 31 1 1.6948 3.0973 -3.6923 32 1 4.9506 -1.2927 -5.1036 33 1 4.7452 -1.7327 -6.7119 34 1 2.8815 -1.6924 -3.4826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596106248.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:21 Heat of formation + Delta-G solvation = -10.083129 kcal Electronic energy + Delta-G solvation = -21397.119291 eV Core-core repulsion = 17912.378796 eV Total energy + Delta-G solvation = -3484.740495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88264 -40.07233 -38.84871 -36.30584 -36.11135 -33.82868 -33.21862 -31.56064 -31.10020 -29.10564 -25.88002 -25.31961 -24.30541 -22.32702 -21.61972 -20.22787 -19.04045 -18.46459 -17.91262 -17.38532 -17.22908 -16.81744 -16.18244 -15.81030 -15.14262 -14.81010 -14.25337 -13.91017 -13.79743 -13.55941 -13.34560 -13.13026 -12.55258 -12.24802 -11.82844 -11.64954 -11.18534 -11.08682 -10.82582 -10.79811 -10.56560 -10.35802 -10.14863 -9.89748 -9.75870 -9.60021 -9.40074 -8.97290 -7.58231 -6.48395 -4.54562 0.13477 0.85790 1.68899 1.79344 2.57226 2.99373 3.06120 3.13612 3.19100 3.41357 3.62700 4.02497 4.41241 4.55780 4.83440 4.88737 4.94532 5.08675 5.48205 5.52495 5.78250 5.87801 5.95464 6.00666 6.10553 6.22908 6.35328 6.62859 6.72719 6.79975 7.05879 7.10858 7.29880 7.83535 8.01209 8.07826 8.11554 8.49287 9.08425 10.63504 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028455 B = 0.004395 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.786647 B = 6369.012686 C = 7063.063041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.232 3.768 3 H 0.047 0.953 4 C -0.544 4.544 5 H 0.082 0.918 6 C 0.081 3.919 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.291 1.291 11 H -0.265 1.265 12 N -0.683 5.683 13 C 0.279 3.721 14 C -0.192 4.192 15 C -0.001 4.001 16 C -0.098 4.098 17 N 0.043 4.957 18 O -0.195 6.195 19 O -0.157 6.157 20 C -0.016 4.016 21 C 0.566 3.434 22 N -0.845 5.845 23 O -0.505 6.505 24 C -0.182 4.182 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.271 0.729 29 H 0.406 0.594 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.403 0.597 33 H 0.407 0.593 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 0.602 -10.578 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.129 3.871 3 H 0.065 0.935 4 C -0.581 4.581 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.519 5.519 8 Si 0.717 3.283 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.190 1.190 12 N -0.301 5.301 13 C 0.163 3.837 14 C -0.216 4.216 15 C -0.022 4.022 16 C -0.186 4.186 17 N 0.557 4.443 18 O -0.402 6.402 19 O -0.373 6.373 20 C -0.021 4.021 21 C 0.349 3.651 22 N -0.409 5.409 23 O -0.378 6.378 24 C -0.207 4.207 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.241 0.759 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.232 0.768 33 H 0.239 0.761 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.664 0.463 -10.075 10.222 hybrid contribution -0.115 0.355 0.219 0.432 sum 1.550 0.817 -9.856 10.011 Atomic orbital electron populations 1.22600 0.98767 1.01895 0.99627 1.19374 0.90423 0.94374 0.82977 0.93542 1.20894 1.34104 1.14965 0.88170 0.89986 1.24845 0.95339 0.96748 0.95450 1.69840 1.44013 1.39812 0.98257 0.86864 0.80678 0.83083 0.77694 1.20057 1.21765 1.19048 1.45715 1.64733 1.12907 1.06696 1.18207 0.87398 0.91497 0.86639 1.20900 1.08914 0.93188 0.98593 1.20642 0.91274 1.00920 0.89345 1.20495 1.20428 0.92035 0.85619 1.43405 0.97981 1.00546 1.02386 1.94475 1.52660 1.02657 1.90367 1.94579 1.43999 1.70512 1.28245 1.19314 0.97242 0.91354 0.94236 1.17931 0.81937 0.78245 0.87023 1.43657 1.21875 1.57184 1.18232 1.90887 1.56503 1.58959 1.31494 1.20595 1.09394 1.00889 0.89792 0.94409 0.92865 0.92126 0.91884 0.75851 0.83225 0.83066 0.76838 0.76140 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.90 37.16 0.33 -2.71 16 2 C 0.23 4.35 1.84 -69.08 -0.13 4.22 16 3 H 0.05 0.89 5.54 -51.93 -0.29 0.60 16 4 C -0.54 -12.72 9.31 -34.44 -0.32 -13.04 16 5 H 0.08 2.08 7.98 -52.49 -0.42 1.66 16 6 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.88 -23.93 13.96 55.43 0.77 -23.16 16 8 Si 0.89 18.88 24.37 -169.99 -4.14 14.74 16 9 H -0.27 -5.72 6.87 56.52 0.39 -5.33 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -5.24 6.53 56.52 0.37 -4.87 16 12 N -0.68 -10.40 5.24 -53.32 -0.28 -10.68 16 13 C 0.28 3.83 6.63 -83.83 -0.56 3.28 16 14 C -0.19 -2.63 8.84 -39.31 -0.35 -2.98 16 15 C 0.00 -0.02 9.54 -39.67 -0.38 -0.40 16 16 C -0.10 -1.50 6.86 -79.52 -0.55 -2.04 16 17 N 0.04 0.76 4.45 34.17 0.15 0.91 16 18 O -0.19 -3.44 18.46 -29.46 -0.54 -3.99 16 19 O -0.16 -2.94 14.99 -37.09 -0.56 -3.50 16 20 C -0.02 -0.22 5.64 -104.99 -0.59 -0.81 16 21 C 0.57 7.87 6.10 -12.32 -0.08 7.80 16 22 N -0.84 -7.60 8.85 30.53 0.27 -7.33 16 23 O -0.50 -9.05 15.61 -18.76 -0.29 -9.35 16 24 C -0.18 -2.20 9.60 -38.97 -0.37 -2.58 16 25 H 0.04 0.58 7.70 -51.93 -0.40 0.18 16 26 H 0.05 1.01 3.27 -51.93 -0.17 0.84 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.41 5.66 8.55 -40.82 -0.35 5.31 16 30 H 0.15 2.03 6.09 -52.48 -0.32 1.71 16 31 H 0.15 1.80 7.62 -52.49 -0.40 1.40 16 32 H 0.40 2.58 8.80 -40.82 -0.36 2.22 16 33 H 0.41 2.99 8.93 -40.82 -0.36 2.63 16 34 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 294.14 15.07 4.43 4.43 Total: -1.00 -30.33 294.14 -6.36 -36.70 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.09 Total: 8.56 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.08 Total: -7.34 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.92 Total: -40.26 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.39 Total: -16.84 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.14 Total: 14.74 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.33 -6.36 -36.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596106248.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.614 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds