Wall clock time and date at job start Tue Mar 31 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47130 * 2 1 4 4 C 1.50701 * 109.46939 * 120.00057 * 2 1 3 5 5 H 1.08002 * 120.00316 * 120.00127 * 4 2 1 6 6 C 1.37881 * 120.00021 * 299.99973 * 4 2 1 7 7 N 1.31511 * 120.00303 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99779 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.46943 * 89.99964 * 8 6 4 10 10 H 1.48497 * 109.47223 * 209.99590 * 8 6 4 11 11 H 1.48493 * 109.47375 * 329.99941 * 8 6 4 12 12 N 1.46497 * 109.47598 * 239.99894 * 2 1 3 13 13 C 1.39718 * 119.99973 * 84.99880 * 12 2 1 14 14 C 1.39021 * 120.00305 * 0.02562 * 13 12 2 15 15 C 1.38200 * 120.22001 * 179.97438 * 14 13 12 16 16 C 1.38027 * 120.22689 * 359.97438 * 15 14 13 17 17 N 1.48027 * 119.99556 * 179.97438 * 16 15 14 18 18 O 1.21795 * 120.00206 * 353.46314 * 17 16 15 19 19 O 1.21801 * 119.99383 * 173.46046 * 17 16 15 20 20 C 1.39574 * 120.00234 * 0.02562 * 16 15 14 21 21 C 1.47867 * 120.10471 * 179.97438 * 20 16 15 22 22 N 1.34776 * 119.99816 * 124.49322 * 21 20 16 23 23 O 1.21544 * 120.00146 * 304.49319 * 21 20 16 24 24 C 1.38636 * 120.00238 * 179.72927 * 13 12 2 25 25 H 1.09000 * 109.46755 * 60.00074 * 1 2 3 26 26 H 1.08995 * 109.47342 * 300.00275 * 1 2 3 27 27 H 1.08994 * 109.47086 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00425 * 180.02562 * 7 6 4 29 29 H 0.96993 * 120.00289 * 265.00640 * 12 2 1 30 30 H 1.08006 * 119.89083 * 359.97438 * 14 13 12 31 31 H 1.08002 * 119.88415 * 180.02562 * 15 14 13 32 32 H 0.97004 * 120.00204 * 0.02562 * 22 21 20 33 33 H 0.96999 * 120.00274 * 180.02562 * 22 21 20 34 34 H 1.08002 * 120.11566 * 359.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8726 2.6997 10 1 0.9756 1.9951 3.9068 11 1 0.8469 2.1765 1.4921 12 7 2.0185 -0.6906 -1.1961 13 6 2.1519 0.0064 -2.3996 14 6 1.8217 1.3554 -2.4620 15 6 1.9525 2.0493 -3.6500 16 6 2.4123 1.4078 -4.7824 17 7 2.5499 2.1559 -6.0523 18 8 2.1469 3.3026 -6.1304 19 8 3.0662 1.6246 -7.0191 20 6 2.7465 0.0537 -4.7304 21 6 3.2388 -0.6359 -5.9422 22 7 4.4221 -1.2806 -5.9169 23 8 2.5764 -0.6212 -6.9612 24 6 2.6195 -0.6457 -3.5302 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.9033 -0.5278 4.4376 29 1 2.2491 -1.6317 -1.1526 30 1 1.4618 1.8628 -1.5792 31 1 1.6948 3.0973 -3.6923 32 1 4.9506 -1.2927 -5.1036 33 1 4.7452 -1.7327 -6.7119 34 1 2.8815 -1.6924 -3.4826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596106248.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:20 Heat of formation + Delta-G solvation = -32.208139 kcal Electronic energy + Delta-G solvation = -21398.078703 eV Core-core repulsion = 17912.378796 eV Total energy + Delta-G solvation = -3485.699908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.14381 -41.20246 -39.97754 -37.63541 -37.43060 -34.86105 -34.79627 -32.91741 -32.28175 -30.38616 -27.33693 -26.80686 -25.41442 -23.49393 -22.95839 -21.45295 -20.17994 -19.76434 -19.28000 -18.61982 -18.48218 -17.88776 -17.60249 -17.08187 -16.50784 -15.88352 -15.48733 -15.19472 -14.97871 -14.83501 -14.60287 -14.42825 -14.06795 -13.64226 -13.25354 -12.83443 -12.68819 -12.52685 -12.17255 -12.15939 -12.10727 -11.65949 -11.49602 -11.29642 -11.26644 -10.80755 -10.70293 -10.45053 -8.77718 -8.37149 -6.45619 -1.10860 -0.19081 0.46047 0.58570 1.33779 1.37817 1.47420 1.51203 2.15460 2.26918 2.30510 2.50691 2.99764 3.39207 3.63792 3.81211 3.86167 4.04791 4.31829 4.41687 4.54106 4.59541 4.67432 4.77779 4.91046 4.93534 5.14113 5.36025 5.44297 5.45970 5.83124 5.85630 6.27506 6.31538 6.53750 6.66431 6.73666 7.21424 7.21793 8.78086 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028455 B = 0.004395 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.786647 B = 6369.012686 C = 7063.063041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.238 3.762 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.938 5.938 8 Si 0.940 3.060 9 H -0.267 1.267 10 H -0.303 1.303 11 H -0.235 1.235 12 N -0.684 5.684 13 C 0.278 3.722 14 C -0.193 4.193 15 C 0.007 3.993 16 C -0.113 4.113 17 N 0.044 4.956 18 O -0.199 6.199 19 O -0.191 6.191 20 C -0.022 4.022 21 C 0.563 3.437 22 N -0.819 5.819 23 O -0.553 6.553 24 C -0.159 4.159 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.269 0.731 29 H 0.412 0.588 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.419 0.581 33 H 0.417 0.583 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 1.145 -11.163 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.134 3.866 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.577 5.577 8 Si 0.766 3.234 9 H -0.193 1.193 10 H -0.231 1.231 11 H -0.158 1.158 12 N -0.303 5.303 13 C 0.163 3.837 14 C -0.217 4.217 15 C -0.013 4.013 16 C -0.201 4.201 17 N 0.552 4.448 18 O -0.407 6.407 19 O -0.401 6.401 20 C -0.028 4.028 21 C 0.346 3.654 22 N -0.384 5.384 23 O -0.430 6.430 24 C -0.183 4.183 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.249 0.751 30 H 0.175 0.825 31 H 0.185 0.815 32 H 0.250 0.750 33 H 0.251 0.749 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.353 0.971 -10.738 10.867 hybrid contribution 0.082 0.104 0.417 0.437 sum 1.435 1.075 -10.321 10.476 Atomic orbital electron populations 1.22528 0.97572 1.02120 1.00483 1.19097 0.91195 0.94079 0.82275 0.92956 1.21217 1.32447 1.13759 0.90067 0.93116 1.25662 0.96853 0.99712 0.95265 1.69990 1.46657 1.42160 0.98858 0.86004 0.79153 0.80095 0.78106 1.19320 1.23073 1.15794 1.45404 1.65476 1.13155 1.06263 1.18294 0.87460 0.91606 0.86336 1.20995 1.08791 0.93184 0.98700 1.20790 0.90286 1.01680 0.88556 1.20764 1.21735 0.92705 0.84929 1.43718 0.97568 1.00522 1.02986 1.94443 1.52484 1.03171 1.90624 1.94579 1.45460 1.70677 1.29343 1.19434 0.97545 0.91014 0.94824 1.18028 0.82718 0.78293 0.86389 1.43473 1.20282 1.55262 1.19428 1.90869 1.58185 1.60955 1.32999 1.20801 1.07196 1.01981 0.88294 0.91619 0.93782 0.92397 0.92184 0.75143 0.82535 0.81463 0.74998 0.74927 0.80682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.45 8.90 71.98 0.64 -4.80 16 2 C 0.24 8.27 1.84 44.25 0.08 8.35 16 3 H 0.05 1.80 5.54 -2.38 -0.01 1.79 16 4 C -0.54 -24.75 9.31 25.60 0.24 -24.51 16 5 H 0.05 2.59 7.98 -2.91 -0.02 2.57 16 6 C 0.02 1.23 5.45 84.66 0.46 1.69 16 7 N -0.94 -51.88 13.96 21.45 0.30 -51.58 16 8 Si 0.94 37.62 24.37 68.60 1.67 39.30 16 9 H -0.27 -10.32 6.87 99.48 0.68 -9.64 16 10 H -0.30 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.23 -8.14 6.53 99.48 0.65 -7.49 16 12 N -0.68 -18.76 5.24 -322.60 -1.69 -20.45 16 13 C 0.28 6.64 6.63 38.17 0.25 6.90 16 14 C -0.19 -4.58 8.84 22.45 0.20 -4.38 16 15 C 0.01 0.18 9.54 22.21 0.21 0.39 16 16 C -0.11 -3.24 6.86 36.65 0.25 -2.99 16 17 N 0.04 1.50 4.45 -45.81 -0.20 1.30 16 18 O -0.20 -6.86 18.46 18.89 0.35 -6.52 16 19 O -0.19 -7.18 14.99 26.17 0.39 -6.79 16 20 C -0.02 -0.56 5.64 -20.10 -0.11 -0.68 16 21 C 0.56 14.73 6.10 86.79 0.53 15.26 16 22 N -0.82 -12.81 8.85 -175.59 -1.55 -14.36 16 23 O -0.55 -19.56 15.61 19.18 0.30 -19.26 16 24 C -0.16 -3.28 9.60 22.67 0.22 -3.07 16 25 H 0.06 1.75 7.70 -2.39 -0.02 1.73 16 26 H 0.04 1.51 3.27 -2.39 -0.01 1.50 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.41 10.42 8.55 -92.71 -0.79 9.63 16 30 H 0.16 3.56 6.09 -2.91 -0.02 3.54 16 31 H 0.17 3.47 7.62 -2.91 -0.02 3.45 16 32 H 0.42 4.05 8.80 -92.71 -0.82 3.23 16 33 H 0.42 5.25 8.93 -92.71 -0.83 4.42 16 34 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -66.93 294.14 1.22 -65.71 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -1.31 Total: 20.48 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 2.97 Total: -7.83 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -3.15 Total: -85.09 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: 1.04 Total: -32.56 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 1.67 Total: 39.30 kcal Total: -66.93 1.22 -65.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596106248.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.502 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds