Wall clock time and date at job start Tue Mar 31 2020 00:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 5 5 H 1.08001 * 119.99971 * 120.00187 * 4 2 1 6 6 C 1.37883 * 119.99775 * 299.99978 * 4 2 1 7 7 N 1.31511 * 119.99819 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47635 * 59.99920 * 8 6 4 10 10 H 1.48509 * 109.46995 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47054 * 299.99441 * 8 6 4 12 12 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 13 13 C 1.46906 * 110.99789 * 85.00200 * 12 2 1 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 2 15 15 N 1.31124 * 126.55157 * 89.99994 * 14 13 12 16 16 C 1.34496 * 105.61699 * 180.02562 * 15 14 13 17 17 C 1.50702 * 126.28863 * 179.97438 * 16 15 14 18 18 C 1.52992 * 109.47310 * 89.99406 * 17 16 15 19 19 F 1.39904 * 109.47076 * 60.00103 * 18 17 16 20 20 F 1.39898 * 109.47248 * 179.97438 * 18 17 16 21 21 F 1.39897 * 109.47628 * 300.00309 * 18 17 16 22 22 N 1.29942 * 107.42284 * 0.02562 * 16 15 14 23 23 O 1.21302 * 110.25186 * 359.70365 * 22 16 15 24 24 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 27 27 H 0.97005 * 119.99939 * 180.02562 * 7 6 4 28 28 H 1.00899 * 111.00672 * 321.05145 * 12 2 1 29 29 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 30 30 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 31 31 H 1.09001 * 109.46930 * 210.00121 * 17 16 15 32 32 H 1.09002 * 109.46516 * 329.99302 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8072 -1.1190 4.0079 10 1 1.8266 -0.4198 5.2205 11 1 1.8277 -2.5197 4.0082 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5886 -0.5217 -3.5557 15 7 1.8617 -1.1620 -4.4393 16 6 2.7348 -1.6666 -5.3292 17 6 2.3943 -2.4902 -6.5445 18 6 2.1731 -1.5646 -7.7423 19 9 3.3396 -0.8322 -7.9874 20 9 1.8575 -2.3292 -8.8705 21 9 1.1206 -0.6858 -7.4647 22 7 3.9261 -1.3143 -4.9481 23 8 3.8637 -0.6513 -3.9342 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7085 1.1613 3.4844 28 1 1.4496 -1.4980 -1.4100 29 1 1.0872 0.6162 -2.5526 30 1 2.7589 1.0461 -2.1182 31 1 3.2143 -3.1749 -6.7608 32 1 1.4854 -3.0608 -6.3534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863793.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:27 Heat of formation + Delta-G solvation = -86.175895 kcal Electronic energy + Delta-G solvation = -21415.379252 eV Core-core repulsion = 17385.482386 eV Total energy + Delta-G solvation = -4029.896866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.40762 -47.93657 -47.84671 -45.63379 -36.66412 -36.20153 -33.81393 -32.37622 -30.99883 -28.99057 -25.63835 -25.11488 -24.90366 -23.21407 -21.47379 -20.41727 -18.92805 -18.80966 -18.35110 -17.75791 -17.14125 -16.49544 -15.20819 -14.93412 -14.82673 -14.69031 -14.44581 -14.30242 -14.22025 -14.01715 -14.00473 -13.57799 -13.34421 -12.75816 -12.63498 -12.40388 -11.95190 -11.71056 -11.55665 -11.13503 -10.98498 -10.89522 -10.70092 -10.26349 -10.18749 -9.89502 -9.18162 -8.44573 -7.60127 -6.07544 -4.11539 1.05435 1.87349 2.54488 2.82837 3.08450 3.30943 3.35168 3.38535 3.45848 3.56010 3.89920 4.03242 4.37607 4.65595 4.75809 5.05920 5.16255 5.24691 5.45242 5.60939 5.80523 5.90633 6.54716 6.71961 6.90427 7.09601 7.60148 7.73049 8.04564 8.08740 8.24914 8.39805 8.94362 9.54063 10.99469 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.043717 B = 0.003218 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.333300 B = 8697.749029 C = 8916.688772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.676 5.676 13 C 0.142 3.858 14 C 0.218 3.782 15 N -0.476 5.476 16 C 0.145 3.855 17 C -0.068 4.068 18 C 0.460 3.540 19 F -0.178 7.178 20 F -0.178 7.178 21 F -0.173 7.173 22 N -0.367 5.367 23 O 0.096 5.904 24 H 0.030 0.970 25 H 0.093 0.907 26 H 0.008 0.992 27 H 0.262 0.738 28 H 0.335 0.665 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.262 -4.018 -17.961 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.107 3.893 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.309 5.309 13 C 0.011 3.989 14 C -0.002 4.002 15 N -0.210 5.210 16 C -0.128 4.128 17 C -0.108 4.108 18 C 0.405 3.595 19 F -0.159 7.159 20 F -0.159 7.159 21 F -0.154 7.154 22 N -0.072 5.072 23 O 0.034 5.966 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.154 0.846 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.195 -4.170 -18.311 18.908 hybrid contribution -0.752 -0.176 0.558 0.953 sum 1.443 -4.346 -17.753 18.334 Atomic orbital electron populations 1.22466 1.00125 0.99638 1.00900 1.19260 0.89993 0.94658 0.85359 0.94112 1.21045 1.30773 1.12754 0.89298 0.91802 1.24929 0.95166 0.95159 0.99076 1.69857 1.36911 1.23026 1.23729 0.86520 0.79240 0.79575 0.81822 1.20183 1.21406 1.20339 1.60983 1.59029 1.08820 1.02046 1.20594 1.00397 0.94276 0.83619 1.29197 0.79171 0.94710 0.97156 1.71921 1.31399 1.13738 1.03913 1.24759 0.85702 1.02738 0.99615 1.20995 1.08737 0.95523 0.85523 1.20179 0.74481 0.80564 0.84295 1.93236 1.48682 1.78973 1.95045 1.93210 1.92934 1.75312 1.54466 1.93253 1.57875 1.70800 1.93498 1.74648 1.22475 1.10090 0.99954 1.85339 1.31064 1.50336 1.29874 0.95038 0.88880 0.97294 0.92824 0.84823 0.90755 0.87460 0.84604 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 8.94 37.16 0.33 -3.48 16 2 C 0.21 4.91 2.57 -68.86 -0.18 4.73 16 3 H 0.04 1.00 7.80 -51.93 -0.40 0.59 16 4 C -0.50 -13.06 8.84 -34.43 -0.30 -13.36 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -24.39 11.32 55.43 0.63 -23.76 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.68 -12.97 6.22 -109.21 -0.68 -13.65 16 13 C 0.14 2.22 6.11 -4.97 -0.03 2.19 16 14 C 0.22 3.33 8.03 -13.06 -0.10 3.22 16 15 N -0.48 -7.17 11.55 -9.87 -0.11 -7.28 16 16 C 0.14 1.95 6.94 -156.37 -1.09 0.87 16 17 C -0.07 -0.62 5.89 -27.89 -0.16 -0.79 16 18 C 0.46 4.74 3.15 37.15 0.12 4.85 16 19 F -0.18 -2.11 17.02 2.25 0.04 -2.08 16 20 F -0.18 -1.67 17.32 2.25 0.04 -1.63 16 21 F -0.17 -2.10 17.02 2.25 0.04 -2.07 16 22 N -0.37 -5.48 12.16 30.90 0.38 -5.10 16 23 O 0.10 1.49 11.31 18.10 0.20 1.70 16 24 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 26 H 0.01 0.16 7.45 -51.93 -0.39 -0.23 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.33 6.28 8.46 -39.29 -0.33 5.94 16 29 H 0.07 1.11 7.44 -51.93 -0.39 0.72 16 30 H 0.11 1.55 8.06 -51.93 -0.42 1.13 16 31 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 296.37 15.07 4.47 4.47 Total: -1.00 -28.26 296.37 -4.59 -32.85 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.06 Total: 1.18 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.51 Total: -0.32 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.21 Total: -49.80 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.70 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.12 Total: -5.77 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.26 -4.59 -32.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863793.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.325 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds