Wall clock time and date at job start Tue Mar 31 2020 00:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50708 * 109.46833 * 119.99997 * 2 1 3 5 5 H 1.08001 * 119.99971 * 120.00187 * 4 2 1 6 6 C 1.37883 * 119.99775 * 299.99978 * 4 2 1 7 7 N 1.31511 * 119.99819 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99657 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47635 * 59.99920 * 8 6 4 10 10 H 1.48509 * 109.46995 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47054 * 299.99441 * 8 6 4 12 12 N 1.46895 * 109.47235 * 239.99532 * 2 1 3 13 13 C 1.46906 * 110.99789 * 85.00200 * 12 2 1 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 2 15 15 N 1.31124 * 126.55157 * 89.99994 * 14 13 12 16 16 C 1.34496 * 105.61699 * 180.02562 * 15 14 13 17 17 C 1.50702 * 126.28863 * 179.97438 * 16 15 14 18 18 C 1.52992 * 109.47310 * 89.99406 * 17 16 15 19 19 F 1.39904 * 109.47076 * 60.00103 * 18 17 16 20 20 F 1.39898 * 109.47248 * 179.97438 * 18 17 16 21 21 F 1.39897 * 109.47628 * 300.00309 * 18 17 16 22 22 N 1.29942 * 107.42284 * 0.02562 * 16 15 14 23 23 O 1.21302 * 110.25186 * 359.70365 * 22 16 15 24 24 H 1.09001 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47160 * 300.00338 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00168 * 1 2 3 27 27 H 0.97005 * 119.99939 * 180.02562 * 7 6 4 28 28 H 1.00899 * 111.00672 * 321.05145 * 12 2 1 29 29 H 1.08992 * 109.47459 * 299.99826 * 13 12 2 30 30 H 1.09004 * 109.47040 * 59.99976 * 13 12 2 31 31 H 1.09001 * 109.46930 * 210.00121 * 17 16 15 32 32 H 1.09002 * 109.46516 * 329.99302 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8072 -1.1190 4.0079 10 1 1.8266 -0.4198 5.2205 11 1 1.8277 -2.5197 4.0082 12 7 2.0197 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5886 -0.5217 -3.5557 15 7 1.8617 -1.1620 -4.4393 16 6 2.7348 -1.6666 -5.3292 17 6 2.3943 -2.4902 -6.5445 18 6 2.1731 -1.5646 -7.7423 19 9 3.3396 -0.8322 -7.9874 20 9 1.8575 -2.3292 -8.8705 21 9 1.1206 -0.6858 -7.4647 22 7 3.9261 -1.3143 -4.9481 23 8 3.8637 -0.6513 -3.9342 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7085 1.1613 3.4844 28 1 1.4496 -1.4980 -1.4100 29 1 1.0872 0.6162 -2.5526 30 1 2.7589 1.0461 -2.1182 31 1 3.2143 -3.1749 -6.7608 32 1 1.4854 -3.0608 -6.3534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602863793.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:27 Heat of formation + Delta-G solvation = -106.149122 kcal Electronic energy + Delta-G solvation = -21416.245356 eV Core-core repulsion = 17385.482386 eV Total energy + Delta-G solvation = -4030.762970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.23817 -48.74312 -48.72117 -46.76504 -38.17931 -37.34898 -35.24402 -33.93198 -32.06487 -30.57133 -27.27934 -26.84690 -25.85423 -24.29545 -22.56362 -22.19732 -19.79370 -19.65671 -19.40928 -18.89891 -18.35506 -18.02568 -16.84404 -16.35507 -15.90839 -15.79263 -15.60246 -15.29159 -15.14199 -15.03471 -14.87036 -14.84997 -14.52374 -13.96197 -13.71724 -13.61853 -13.57200 -13.25001 -12.82852 -12.72938 -12.65501 -12.39231 -12.26217 -12.12627 -11.93475 -11.21860 -11.05022 -10.44522 -9.17032 -8.07416 -6.17463 -0.09587 0.81170 1.48375 1.48804 1.56284 1.65274 1.69779 2.14947 2.47515 2.66477 2.68998 2.96354 3.17087 3.22427 3.60002 3.78331 4.06295 4.14278 4.36218 4.44583 4.61262 4.72091 4.80423 4.95157 5.08429 5.37767 5.72817 5.81127 6.24993 6.52915 6.62771 6.92222 6.93840 7.51745 8.97716 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.043717 B = 0.003218 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.333300 B = 8697.749029 C = 8916.688772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.219 3.781 3 H 0.023 0.977 4 C -0.517 4.517 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.148 3.852 14 C 0.216 3.784 15 N -0.484 5.484 16 C 0.150 3.850 17 C -0.066 4.066 18 C 0.462 3.538 19 F -0.189 7.189 20 F -0.170 7.170 21 F -0.186 7.186 22 N -0.380 5.380 23 O 0.083 5.917 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.338 0.662 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.165 0.835 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -5.024 -18.841 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.112 3.888 3 H 0.041 0.959 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.313 5.313 13 C 0.017 3.983 14 C -0.004 4.004 15 N -0.219 5.219 16 C -0.123 4.123 17 C -0.105 4.105 18 C 0.407 3.593 19 F -0.171 7.171 20 F -0.152 7.152 21 F -0.167 7.167 22 N -0.087 5.087 23 O 0.024 5.976 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.182 0.818 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.217 -5.174 -19.196 20.004 hybrid contribution -0.754 0.124 0.722 1.051 sum 1.463 -5.049 -18.474 19.208 Atomic orbital electron populations 1.22281 0.99495 0.99511 1.00701 1.18997 0.90329 0.93482 0.86036 0.95945 1.21377 1.30662 1.12660 0.90908 0.92702 1.25610 0.95435 0.95831 1.01612 1.69971 1.37734 1.24031 1.24123 0.85640 0.78663 0.78644 0.78807 1.19983 1.21169 1.19930 1.60750 1.58842 1.09324 1.02393 1.20544 1.01379 0.93802 0.82593 1.29003 0.79334 0.94919 0.97189 1.71943 1.31819 1.13840 1.04267 1.25438 0.84917 1.01873 1.00071 1.21296 1.11171 0.94987 0.83077 1.20295 0.73753 0.80352 0.84883 1.93218 1.49299 1.79385 1.95175 1.93226 1.92827 1.74969 1.54153 1.93230 1.58479 1.71410 1.93621 1.74651 1.23286 1.10703 1.00075 1.85326 1.31125 1.50799 1.30350 0.95029 0.91690 0.94774 0.92937 0.84505 0.89595 0.86544 0.81765 0.81530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.01 8.94 71.98 0.64 -6.37 16 2 C 0.22 10.01 2.57 44.17 0.11 10.13 16 3 H 0.02 1.11 7.80 -2.39 -0.02 1.09 16 4 C -0.52 -27.02 8.84 25.60 0.23 -26.80 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -50.26 11.32 21.45 0.24 -50.02 16 8 Si 0.96 42.34 29.54 68.60 2.03 44.36 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 N -0.68 -25.58 6.22 -499.45 -3.11 -28.69 16 13 C 0.15 4.43 6.11 85.56 0.52 4.95 16 14 C 0.22 6.33 8.03 88.38 0.71 7.04 16 15 N -0.48 -13.74 11.55 -303.20 -3.50 -17.25 16 16 C 0.15 3.76 6.94 138.46 0.96 4.72 16 17 C -0.07 -1.03 5.89 29.85 0.18 -0.85 16 18 C 0.46 8.55 3.15 71.98 0.23 8.78 16 19 F -0.19 -4.21 17.02 44.97 0.77 -3.44 16 20 F -0.17 -2.81 17.32 44.97 0.78 -2.03 16 21 F -0.19 -4.23 17.02 44.97 0.77 -3.46 16 22 N -0.38 -10.81 12.16 -60.32 -0.73 -11.55 16 23 O 0.08 2.50 11.31 74.83 0.85 3.35 16 24 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 25 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 26 H 0.03 1.27 7.45 -2.39 -0.02 1.26 16 27 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 28 H 0.34 12.31 8.46 -89.69 -0.76 11.55 16 29 H 0.09 2.41 7.44 -2.39 -0.02 2.39 16 30 H 0.12 3.27 8.06 -2.38 -0.02 3.25 16 31 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.17 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -59.44 296.37 2.53 -56.91 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.42 Total: 9.04 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 4.03 Total: 2.78 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -7.10 Total: -107.50 kcal Atomic # 8 Polarization: 2.50 SS G_CDS: 0.85 Total: 3.35 kcal Atomic # 9 Polarization: -11.25 SS G_CDS: 2.31 Total: -8.94 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -59.44 2.53 -56.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863793.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.244 kcal (2) G-P(sol) polarization free energy of solvation -59.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds