Wall clock time and date at job start Tue Mar 31 2020 00:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46973 * 2 1 4 4 C 1.52998 * 109.47760 * 120.00292 * 2 1 3 5 5 N 1.46505 * 109.46658 * 305.00396 * 4 2 1 6 6 C 1.35310 * 125.86763 * 125.29510 * 5 4 2 7 7 C 1.35348 * 106.17503 * 180.17814 * 6 5 4 8 8 C 1.50700 * 126.75241 * 179.84708 * 7 6 5 9 9 C 1.50702 * 109.46869 * 124.71667 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.33770 * 106.49624 * 359.59617 * 7 6 5 18 18 N 1.28632 * 108.88455 * 0.25241 * 17 7 6 19 19 C 1.53004 * 109.47135 * 240.00581 * 2 1 3 20 20 F 1.39895 * 109.46881 * 299.99333 * 19 2 1 21 21 F 1.39900 * 109.47010 * 59.99644 * 19 2 1 22 22 F 1.39898 * 109.47104 * 179.97438 * 19 2 1 23 23 H 1.08999 * 109.46906 * 299.99173 * 1 2 3 24 24 H 1.08990 * 109.47548 * 59.99788 * 1 2 3 25 25 H 1.09004 * 109.46413 * 179.97438 * 1 2 3 26 26 H 0.96699 * 114.00201 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47517 * 185.00330 * 4 2 1 28 28 H 1.08999 * 109.47139 * 64.99983 * 4 2 1 29 29 H 1.08000 * 126.91429 * 0.03609 * 6 5 4 30 30 H 1.09004 * 109.47210 * 4.71960 * 8 7 6 31 31 H 1.08994 * 109.47551 * 244.71612 * 8 7 6 32 32 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.4559 -0.1037 2.4423 6 6 0.7620 -0.7475 3.4092 7 6 0.4075 0.1971 4.3114 8 6 -0.3844 -0.0157 5.5758 9 6 0.3955 0.5132 6.7519 10 1 1.3671 0.9593 6.5991 11 6 -0.1342 0.4334 8.0224 12 7 0.5439 0.8999 9.0481 13 14 -1.8151 -0.3375 8.2868 14 1 -1.6590 -1.7943 8.5289 15 1 -2.4692 0.2923 9.4619 16 1 -2.6533 -0.1233 7.0799 17 7 0.9032 1.3557 3.8629 18 7 1.5189 1.1436 2.7536 19 6 2.0400 -0.7211 -1.2493 20 9 1.5738 -2.0401 -1.2494 21 9 1.5736 -0.0616 -2.3915 22 9 3.4390 -0.7206 -1.2496 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 2.9703 1.4238 0.0004 27 1 3.1265 -0.6443 1.2950 28 1 1.7518 -1.7715 1.2055 29 1 0.5346 -1.8025 3.4513 30 1 -0.5707 -1.0809 5.7129 31 1 -1.3347 0.5129 5.5027 32 1 0.1714 0.8434 9.9419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603257969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:14 Heat of formation + Delta-G solvation = -99.690072 kcal Electronic energy + Delta-G solvation = -22181.340594 eV Core-core repulsion = 18150.857710 eV Total energy + Delta-G solvation = -4030.482884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.094 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.65708 -48.17641 -48.08577 -42.76443 -38.66668 -34.64188 -33.29016 -31.93626 -31.29412 -28.31896 -27.60852 -26.55800 -23.21608 -22.28394 -21.27939 -20.15184 -19.28293 -18.89365 -18.77978 -17.11473 -16.76247 -16.56543 -15.71815 -15.23724 -14.94454 -14.65477 -14.54896 -14.41193 -14.26766 -14.23654 -14.14946 -13.86602 -13.36637 -12.94160 -12.84339 -12.48619 -12.27954 -12.14097 -11.82436 -11.25504 -10.89769 -10.67106 -10.62898 -10.13373 -9.91951 -9.52155 -9.35247 -8.56207 -8.33792 -6.01808 -4.00211 1.83819 2.07863 2.53462 3.13198 3.21697 3.28954 3.31922 3.36640 3.38878 3.40532 3.71045 3.94098 4.10205 4.44424 4.51871 4.78483 4.98194 5.16064 5.20211 5.30059 5.60072 5.68970 5.84751 6.07533 6.79007 6.88254 6.94431 7.03433 7.16978 7.70315 8.55025 9.05605 9.15902 9.57035 11.11690 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.042777 B = 0.003816 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.399095 B = 7336.522047 C = 7518.094231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.091 3.909 3 O -0.503 6.503 4 C 0.095 3.905 5 N -0.303 5.303 6 C -0.082 4.082 7 C 0.042 3.958 8 C 0.059 3.941 9 C -0.508 4.508 10 H 0.076 0.924 11 C 0.068 3.932 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.264 1.264 17 N -0.251 5.251 18 N -0.081 5.081 19 C 0.429 3.571 20 F -0.176 7.176 21 F -0.169 7.169 22 F -0.181 7.181 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.388 0.612 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.184 0.816 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 -7.704 -22.622 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 O -0.309 6.309 4 C -0.029 4.029 5 N -0.098 5.098 6 C -0.230 4.230 7 C -0.094 4.094 8 C 0.020 3.980 9 C -0.546 4.546 10 H 0.094 0.906 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.189 1.189 17 N -0.119 5.119 18 N -0.060 5.060 19 C 0.374 3.626 20 F -0.158 7.158 21 F -0.150 7.150 22 F -0.162 7.162 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.237 0.763 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.201 0.799 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.953 -6.173 -22.869 23.768 hybrid contribution -0.288 -1.895 0.218 1.929 sum 1.664 -8.068 -22.651 24.102 Atomic orbital electron populations 1.21887 0.88298 1.04363 1.06051 1.22584 0.99160 0.85086 0.88599 1.86864 1.27955 1.20355 1.95725 1.22463 1.00391 0.98273 0.81809 1.46780 1.38325 1.07645 1.17064 1.23344 1.05739 1.01118 0.92792 1.22511 1.00537 0.88163 0.98218 1.18165 0.94678 0.97225 0.87939 1.20911 1.05232 1.39355 0.89148 0.90580 1.24976 0.97276 0.95139 0.95910 1.69900 1.38214 1.46559 0.99209 0.86831 0.85025 0.79586 0.78181 1.20229 1.21216 1.18893 1.75163 1.09825 1.24469 1.02477 1.78400 1.19656 0.96417 1.11549 1.21388 0.75758 0.78043 0.87411 1.93202 1.88364 1.37427 1.96784 1.93223 1.88240 1.80530 1.52991 1.93203 1.29858 1.96316 1.96847 0.89083 0.89757 0.89510 0.76281 0.87286 0.86045 0.79925 0.95090 0.94358 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.39 37.16 0.31 -1.10 16 2 C 0.09 0.82 0.63 -90.62 -0.06 0.76 16 3 O -0.50 -5.26 11.95 -35.23 -0.42 -5.68 16 4 C 0.09 0.87 5.40 -4.04 -0.02 0.85 16 5 N -0.30 -4.42 2.47 -61.26 -0.15 -4.57 16 6 C -0.08 -1.32 11.49 -17.05 -0.20 -1.52 16 7 C 0.04 0.90 6.44 -82.78 -0.53 0.36 16 8 C 0.06 1.39 4.62 -29.03 -0.13 1.26 16 9 C -0.51 -14.60 9.64 -34.44 -0.33 -14.93 16 10 H 0.08 2.45 7.98 -52.49 -0.42 2.03 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 13 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 17 N -0.25 -5.71 12.40 33.29 0.41 -5.29 16 18 N -0.08 -1.53 12.04 60.35 0.73 -0.80 16 19 C 0.43 3.51 2.38 37.16 0.09 3.60 16 20 F -0.18 -1.40 16.19 2.25 0.04 -1.37 16 21 F -0.17 -1.60 16.74 2.25 0.04 -1.56 16 22 F -0.18 -1.44 16.51 2.25 0.04 -1.40 16 23 H 0.09 1.13 7.43 -51.93 -0.39 0.74 16 24 H 0.08 0.76 7.80 -51.93 -0.41 0.35 16 25 H 0.09 0.64 7.80 -51.93 -0.41 0.24 16 26 H 0.39 2.77 8.69 45.56 0.40 3.16 16 27 H 0.11 0.83 7.94 -51.93 -0.41 0.42 16 28 H 0.12 0.77 7.59 -51.93 -0.39 0.38 16 29 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.03 0.67 7.56 -51.93 -0.39 0.27 16 31 H 0.04 0.91 7.19 -51.93 -0.37 0.54 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 291.30 15.07 4.39 4.39 Total: -1.00 -34.62 291.30 -2.18 -36.80 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -2.38 Total: -0.97 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -0.97 Total: -8.84 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 1.76 Total: -37.70 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.42 Total: -5.68 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.11 Total: -4.32 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -34.62 -2.18 -36.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603257969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.888 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds